BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00004868
         (2084 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containi...   617   e-174
emb|CBI17575.3| unnamed protein product [Vitis vinifera]              609   e-171
ref|XP_003631109.1| Pentatricopeptide repeat-containing protein ...   569   e-160
ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containi...   549   e-153
ref|XP_002525094.1| pentatricopeptide repeat-containing protein,...   530   e-148

>ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01390-like
            [Vitis vinifera]
          Length = 519

 Score =  617 bits (1592), Expect = e-174
 Identities = 296/491 (60%), Positives = 382/491 (77%)
 Frame = +1

Query: 1    IRWDSYTINQVLKTHPPMEKAWLFFNWASKLKGFKHDQFTYTTMLDIFGEAGRISSMKHV 180
            IRWDSYT+NQVLK+HPPMEKAWLFFNWAS+LKGFKHDQFTYTTMLDIFGEA RI SM +V
Sbjct: 29   IRWDSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTYTTMLDIFGEARRIESMNYV 88

Query: 181  FQQMQEKSIKVDAVTYTSLLHWLSKDGDFQGALKMWEEMKANGCCPTVVTYTAFMKVLFD 360
            FQQMQEK IK DAVTYTSL+HW S DGD + A+++W+EMKA GCC TVV+YTA+MK+LFD
Sbjct: 89   FQQMQEKGIKTDAVTYTSLMHWFSNDGDIERAVRVWKEMKAKGCCLTVVSYTAYMKILFD 148

Query: 361  NNRVKEATEVYKEMLESGCSPNCYTYTVLMEYLASTGKFREALEVLSKMQEAGVQPDKAT 540
            N RVKEA +VYKEML+SGC+PNCYTYTVLME+L  +GK++ ALE+ S+MQEAGVQPDKAT
Sbjct: 149  NKRVKEAADVYKEMLQSGCAPNCYTYTVLMEHLTGSGKYKAALEIFSRMQEAGVQPDKAT 208

Query: 541  CNILVQRCSRAGETWAMNHVLQYMKENAFVLRHSVYLEALEALKYVGESDELLREVNPHL 720
            CNIL+++  + G+TWA+  +L YMK+N  VLR+ VYLEAL+ LK  GESD LLR+VNPHL
Sbjct: 209  CNILIEKFCKTGQTWAITQILLYMKDNFLVLRYPVYLEALQTLKVAGESDILLRQVNPHL 268

Query: 721  SYESIDVEEPAECKTINTDSLTIIDRGIVINLLAKRNFIAVEHMLKELVNQKILLDSKLI 900
            +      EE  E K    D  + IDRG V+  L K+NF A++ +L  ++++   LDS +I
Sbjct: 269  NVGLSSKEEIVEFKETVADVHSTIDRGFVLLFLTKQNFYAIDCLLTGMIHKNTRLDSVII 328

Query: 901  SAIIQANCVNHKPTSALTAFNYGMEMGIYIERPACLALIGMFIRSNSVLELVEIIEKMIN 1080
            S II+ NC + +   AL AF Y ++MGI IER A LAL+G+FIR+NS  ++ +I+EKM+ 
Sbjct: 329  SQIIEVNCAHCRINGALLAFEYSVKMGINIERIAYLALMGVFIRANSFPKVADIVEKMVR 388

Query: 1081 AGVTLGTYLLSLVIYKLGCIQMSSSSERVFNLLPDDQKNTVTYTALMGAYFCSGDVDKGL 1260
            AG++LG YL +L+IY+LGC +   S+ +VF LLPDDQK T  YTAL+ AYF SG+VDKGL
Sbjct: 389  AGISLGMYLGALLIYRLGCARRPGSAAKVFGLLPDDQKGTAAYTALISAYFSSGNVDKGL 448

Query: 1261 EIFDSMKRERIHASSGTYRLLILGLKEAGRVHEAENYYKVKKIVQRNCLAQETVSMEEHL 1440
            +I+ +M+R+RIH + GTY LL+ GL++ GR  EAE Y K KK +  +  +Q+ VSM+E +
Sbjct: 449  KIYKTMQRKRIHPALGTYNLLLAGLEKKGRAREAEIYRKEKKTLHTHGHSQDIVSMDEKI 508

Query: 1441 CDLIFAGGATS 1473
            C+L+F+G   S
Sbjct: 509  CNLLFSGNLVS 519


>emb|CBI17575.3| unnamed protein product [Vitis vinifera]
          Length = 656

 Score =  609 bits (1570), Expect = e-171
 Identities = 296/502 (58%), Positives = 382/502 (76%), Gaps = 11/502 (2%)
 Frame = +1

Query: 1    IRWDSYTINQVLKTHPPMEKAWLFFNWASKLKGFKHDQFTYTTMLDIFGEAGRISSMKHV 180
            IRWDSYT+NQVLK+HPPMEKAWLFFNWAS+LKGFKHDQFTYTTMLDIFGEA RI SM +V
Sbjct: 155  IRWDSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTYTTMLDIFGEARRIESMNYV 214

Query: 181  FQQMQEKSIKVDAVTYTSLLHWLSKDGDFQGALKMWEEMKANGCCPTVVTYTAFMKVLFD 360
            FQQMQEK IK DAVTYTSL+HW S DGD + A+++W+EMKA GCC TVV+YTA+MK+LFD
Sbjct: 215  FQQMQEKGIKTDAVTYTSLMHWFSNDGDIERAVRVWKEMKAKGCCLTVVSYTAYMKILFD 274

Query: 361  NNRVKEATEVYKEMLESGCSPNCYTYTVLMEYLASTGK-----------FREALEVLSKM 507
            N RVKEA +VYKEML+SGC+PNCYTYTVLME+L  +GK           ++ ALE+ S+M
Sbjct: 275  NKRVKEAADVYKEMLQSGCAPNCYTYTVLMEHLTGSGKHLLQFSCIACKYKAALEIFSRM 334

Query: 508  QEAGVQPDKATCNILVQRCSRAGETWAMNHVLQYMKENAFVLRHSVYLEALEALKYVGES 687
            QEAGVQPDKATCNIL+++  + G+TWA+  +L YMK+N  VLR+ VYLEAL+ LK  GES
Sbjct: 335  QEAGVQPDKATCNILIEKFCKTGQTWAITQILLYMKDNFLVLRYPVYLEALQTLKVAGES 394

Query: 688  DELLREVNPHLSYESIDVEEPAECKTINTDSLTIIDRGIVINLLAKRNFIAVEHMLKELV 867
            D LLR+VNPHL+      EE  E K    D  + IDRG V+  L K+NF A++ +L  ++
Sbjct: 395  DILLRQVNPHLNVGLSSKEEIVEFKETVADVHSTIDRGFVLLFLTKQNFYAIDCLLTGMI 454

Query: 868  NQKILLDSKLISAIIQANCVNHKPTSALTAFNYGMEMGIYIERPACLALIGMFIRSNSVL 1047
            ++   LDS +IS II+ NC + +   AL AF Y ++MGI IER A LAL+G+FIR+NS  
Sbjct: 455  HKNTRLDSVIISQIIEVNCAHCRINGALLAFEYSVKMGINIERIAYLALMGVFIRANSFP 514

Query: 1048 ELVEIIEKMINAGVTLGTYLLSLVIYKLGCIQMSSSSERVFNLLPDDQKNTVTYTALMGA 1227
            ++ +I+EKM+ AG++LG YL +L+IY+LGC +   S+ +VF LLPDDQK T  YTAL+ A
Sbjct: 515  KVADIVEKMVRAGISLGMYLGALLIYRLGCARRPGSAAKVFGLLPDDQKGTAAYTALISA 574

Query: 1228 YFCSGDVDKGLEIFDSMKRERIHASSGTYRLLILGLKEAGRVHEAENYYKVKKIVQRNCL 1407
            YF SG+VDKGL+I+ +M+R+RIH + GTY LL+ GL++ GR  EAE Y K KK +  +  
Sbjct: 575  YFSSGNVDKGLKIYKTMQRKRIHPALGTYNLLLAGLEKKGRAREAEIYRKEKKTLHTHGH 634

Query: 1408 AQETVSMEEHLCDLIFAGGATS 1473
            +Q+ VSM+E +C+L+F+G   S
Sbjct: 635  SQDIVSMDEKICNLLFSGNLVS 656


>ref|XP_003631109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355525131|gb|AET05585.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 687

 Score =  569 bits (1467), Expect = e-160
 Identities = 276/488 (56%), Positives = 368/488 (75%), Gaps = 1/488 (0%)
 Frame = +1

Query: 1    IRWDSYTINQVLKTHPPMEKAWLFFNWASKLKGFKHDQFTYTTMLDIFGEAGRISSMKHV 180
            ++WDSYT+NQVLK+HPPMEKAWLFFNWAS+LKGFKHDQFTYTTMLDIFGEAGRISSMKHV
Sbjct: 196  LKWDSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTYTTMLDIFGEAGRISSMKHV 255

Query: 181  FQQMQEKSIKVDAVTYTSLLHWLSKDGDFQGALKMWEEMKANGCC-PTVVTYTAFMKVLF 357
            F QM EK IK+D+VTYTS++HWLS  G+   A+ +W+EMK+ GCC PTVV+YTAF+K+LF
Sbjct: 256  FNQMHEKGIKIDSVTYTSMMHWLSTSGNVDEAIALWDEMKSKGCCYPTVVSYTAFIKILF 315

Query: 358  DNNRVKEATEVYKEMLESGCSPNCYTYTVLMEYLASTGKFREALEVLSKMQEAGVQPDKA 537
            DN+RVKEAT +YKEML +GC PNCYTYTVLM++L ++GK +EALE+  KMQEAGV+PDKA
Sbjct: 316  DNHRVKEATAIYKEMLHNGCVPNCYTYTVLMDHLIASGKCKEALEIFQKMQEAGVEPDKA 375

Query: 538  TCNILVQRCSRAGETWAMNHVLQYMKENAFVLRHSVYLEALEALKYVGESDELLREVNPH 717
             CNIL+ +CS+   T  M  +LQYMKEN  VLR+ VY++A+EALK  GESD LLR+VNPH
Sbjct: 376  ACNILIDKCSKVCGTVFMTKILQYMKENRLVLRYRVYVKAMEALKIAGESDTLLRQVNPH 435

Query: 718  LSYESIDVEEPAECKTINTDSLTIIDRGIVINLLAKRNFIAVEHMLKELVNQKILLDSKL 897
               +S   E+  +  T+  DS + ID+ +++ LL  RN +A++H+++ ++++KI +D+K+
Sbjct: 436  FYLDSSFKEKAHDRNTVIADSSSNIDKELLLVLLRNRNVVAIDHLIQGMMDKKISVDNKV 495

Query: 898  ISAIIQANCVNHKPTSALTAFNYGMEMGIYIERPACLALIGMFIRSNSVLELVEIIEKMI 1077
            IS II+ NC   +P  AL AFNY + MGI IER   L+L+G+  RSN   +LVEI+ +M 
Sbjct: 496  ISTIIEVNCNCCRPDGALLAFNYSVTMGISIERTGYLSLVGLLNRSNMFSKLVEIVGEMT 555

Query: 1078 NAGVTLGTYLLSLVIYKLGCIQMSSSSERVFNLLPDDQKNTVTYTALMGAYFCSGDVDKG 1257
             AG +LG YL SL+IY+LGC +  S + ++FNLLPD+ K   TYTAL+  YF +  V+K 
Sbjct: 556  RAGHSLGIYLASLLIYRLGCARQLSIALKIFNLLPDNHKCVATYTALISIYFSARRVNKA 615

Query: 1258 LEIFDSMKRERIHASSGTYRLLILGLKEAGRVHEAENYYKVKKIVQRNCLAQETVSMEEH 1437
            LEI+  M ++    +SGT+ +L+ GL+  GR  EA  + K KK +  N  +QE +S E  
Sbjct: 616  LEIYKIMCQKGNCPTSGTFNILVAGLERNGRFSEAGVHRKAKKNLNSNIGSQENLSTEGR 675

Query: 1438 LCDLIFAG 1461
            +CDL+FAG
Sbjct: 676  ICDLLFAG 683


>ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01390-like
            [Glycine max]
          Length = 585

 Score =  549 bits (1414), Expect = e-153
 Identities = 266/488 (54%), Positives = 361/488 (73%), Gaps = 2/488 (0%)
 Frame = +1

Query: 1    IRWDSYTINQVLKTHPPMEKAWLFFNWASKLKGFKHDQFTYTTMLDIFGEAGRISSMKHV 180
            ++WDSYT+NQVLK+HPPMEKAWLFFNW S L+GFKHD +TYTTMLDIFGEAGR+SSMKH+
Sbjct: 93   MKWDSYTVNQVLKSHPPMEKAWLFFNWVSSLRGFKHDHYTYTTMLDIFGEAGRVSSMKHL 152

Query: 181  FQQMQEKSIKVDAVTYTSLLHWLSKDGDFQGALKMWEEMKANGCCPTVVTYTAFMKVLFD 360
            FQQMQEK IK+D+VTYTS++HWLS  G+F  A++MW++MK+ G  PTVV+YTA++K+LF 
Sbjct: 153  FQQMQEKGIKLDSVTYTSMMHWLSSSGNFDEAMQMWDQMKSKGFHPTVVSYTAYIKILFH 212

Query: 361  NNRVKEATEVYKEMLESGCSPNCYTYTVLMEYLASTGKFREALEVLSKMQEAGVQPDKAT 540
            N RVKEAT  YKEM+ S  +PNC+TYTVLM+YL  +G+++EALE+  KMQEAG QPDKA 
Sbjct: 213  NQRVKEATRAYKEMISSRVAPNCHTYTVLMDYLIGSGQYKEALEIFEKMQEAGAQPDKAA 272

Query: 541  CNILVQRCSRAGETWAMNHVLQYMKENAFVLRHSVYLEALEALKYVGESDELLREVNPHL 720
            CNIL++RCS+ G T  M H+LQYMKEN  VLR+ V+++ALEALK  GESD LLR+VNP  
Sbjct: 273  CNILIERCSKVGGTEFMTHILQYMKENRLVLRYPVFVKALEALKIAGESDTLLRQVNPQF 332

Query: 721  SYESIDVEEPAECKTINTDSLTIIDRGIVINLLAKRNFIAVEHMLKELVNQKILLDSKLI 900
              + I  ++ +   T+  D  T ID+ ++  LL  RN +A++H+L  ++++KI LD K++
Sbjct: 333  YMDCIIRKKASNTITVAADCPTNIDKELLFVLLKNRNVVAIDHLLTGMMDKKISLDHKVV 392

Query: 901  SAIIQANCVNHKPTSALTAFNYGMEMGIYIERPACLALIGMFIRSNSVLELVEIIEKMIN 1080
            S II+ NC + +P  AL AF Y + MGI IER   L+LIG+ IRSN   +L EI+EKM  
Sbjct: 393  STIIEVNCSHCRPEGALLAFKYSVTMGISIERTGYLSLIGLLIRSNMFSKLAEIVEKMTR 452

Query: 1081 AGVTLGTYLLSLVIYKLGCIQMSSSSERVFNLLPDDQKNTVTYTALMGAYFCSGDVDKGL 1260
            AG +LG YL SL+I++LGC +  + + ++FNLLPD+ K + TYTAL+  YF    V++ L
Sbjct: 453  AGHSLGIYLASLLIFRLGCARKHTLAMKIFNLLPDNHKCSATYTALISVYFSVRRVNEAL 512

Query: 1261 EIFDSMKRERIHASSGTYRLLILGLKEAGRVHEAENYYKVK--KIVQRNCLAQETVSMEE 1434
            EI+  M  +      GTY +LI GL+  G+  EAE+Y K K  K ++ N  +QE+V +E 
Sbjct: 513  EIYKIMCSKGFCPVLGTYDVLIAGLERNGKYAEAEHYRKAKKRKSLRANSGSQESVCIEG 572

Query: 1435 HLCDLIFA 1458
             +C+L+F+
Sbjct: 573  KICNLLFS 580


>ref|XP_002525094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535553|gb|EEF37221.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 472

 Score =  530 bits (1366), Expect = e-148
 Identities = 259/470 (55%), Positives = 352/470 (74%)
 Frame = +1

Query: 52   MEKAWLFFNWASKLKGFKHDQFTYTTMLDIFGEAGRISSMKHVFQQMQEKSIKVDAVTYT 231
            MEKAW+FFNW S  +GFKHDQFTYTTMLDIFGEAGRI SM +VF+QMQEK IK+D VTYT
Sbjct: 1    MEKAWIFFNWVSGFQGFKHDQFTYTTMLDIFGEAGRIESMNYVFKQMQEKDIKIDTVTYT 60

Query: 232  SLLHWLSKDGDFQGALKMWEEMKANGCCPTVVTYTAFMKVLFDNNRVKEATEVYKEMLES 411
            SL+HWLS++GD  GA+K+WEEMK  G   TVV+YTAFMK+LFDN RVKEAT +YKEMLE 
Sbjct: 61   SLMHWLSRNGDVDGAIKIWEEMKEKGLYLTVVSYTAFMKILFDNKRVKEATNIYKEMLEC 120

Query: 412  GCSPNCYTYTVLMEYLASTGKFREALEVLSKMQEAGVQPDKATCNILVQRCSRAGETWAM 591
            G  PNC+TYTVLMEYL  +GK +EALE+  KMQEAGVQPDKA CNILV+RC  AGET  M
Sbjct: 121  GIPPNCHTYTVLMEYLVVSGKCQEALEIFKKMQEAGVQPDKAMCNILVERCCEAGETNTM 180

Query: 592  NHVLQYMKENAFVLRHSVYLEALEALKYVGESDELLREVNPHLSYESIDVEEPAECKTIN 771
              +LQYMKEN   LR+ ++LEAL+ L+  GE D LL++VNPH + ESI+ ++ +E  T  
Sbjct: 181  TPILQYMKENHLALRYPIFLEALKILRIAGECDALLKQVNPHCAAESINNDDSSEFTTSA 240

Query: 772  TDSLTIIDRGIVINLLAKRNFIAVEHMLKELVNQKILLDSKLISAIIQANCVNHKPTSAL 951
             +    ID+G+++ LL K+N +AV+H+L  ++++ ++L+S ++S II+ NC   +P SAL
Sbjct: 241  YND--PIDKGLLLILLRKQNLVAVDHLLAGVLDKNMVLESWIVSTIIEVNCSQCRPDSAL 298

Query: 952  TAFNYGMEMGIYIERPACLALIGMFIRSNSVLELVEIIEKMINAGVTLGTYLLSLVIYKL 1131
             AF Y M +GI +ER A LALIG+ IRSN+ L ++EI+++ I  G +LG YL +L+I++L
Sbjct: 299  MAFEYSMRVGIDLERTAYLALIGIMIRSNTSLWVLEIVKETIRVGHSLGLYLSALLIHRL 358

Query: 1132 GCIQMSSSSERVFNLLPDDQKNTVTYTALMGAYFCSGDVDKGLEIFDSMKRERIHASSGT 1311
            G  +  + + ++F+LLPD+QK T TYTA++G YF +G   K L+I+ +MK+  I+ S GT
Sbjct: 359  GSARRPNCAAKIFDLLPDEQKCTATYTAMIGVYFSAGSAAKALKIYKTMKKNSINPSLGT 418

Query: 1312 YRLLILGLKEAGRVHEAENYYKVKKIVQRNCLAQETVSMEEHLCDLIFAG 1461
            Y +L+ GL+++GRV E +N+ K K+ +  +      + MEE +CDL+FAG
Sbjct: 419  YNVLLAGLEKSGRVCETDNFRKEKRSLMADGNRLSCLPMEEKICDLLFAG 468