BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00004862
         (659 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III s...   252   5e-65
ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III s...   249   2e-64
ref|XP_004135978.1| PREDICTED: DNA-directed RNA polymerase III s...   217   2e-54
ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polype...   212   4e-53
ref|NP_001241897.1| uncharacterized protein LOC100800770 [Glycin...   211   8e-53

>ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Vitis
           vinifera] gi|297735498|emb|CBI17938.3| unnamed protein
           product [Vitis vinifera]
          Length = 192

 Score =  252 bits (643), Expect = 5e-65
 Identities = 121/192 (63%), Positives = 147/192 (76%), Gaps = 7/192 (3%)
 Frame = +3

Query: 24  MFFLSLIEHTXXXXXXXXXXXXXQAIKEELETLFLDKVIPNLGLCVSVYDIRSINGGFIF 203
           MF+LSLIEHT             +AIK ELE+LFLDKVI NLGLC+SVYDIRSI+GGF+F
Sbjct: 1   MFYLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVIANLGLCISVYDIRSIDGGFVF 60

Query: 204 PGDGASTFTVEFRLIMFRPFVGEILSGEVEESDANGLRLSLGFFKDIMLPVHLLPNPSTF 383
           PGDGAST+TVEFRL+MFRPFVGEI++ +++ESDANGLRLSLGFF DI +PVHL+PNP   
Sbjct: 61  PGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLRLSLGFFDDIYIPVHLMPNPCHC 120

Query: 384 ADGK-------WTWDFGGVELPIEKEEEIRFRVHSINYPSIPVEQEKDAKPFAPMVITAS 542
                      W WD+   + PI+  +EIRF+V S++YP IPVEQ K++KPFAPMVI  S
Sbjct: 121 EPNPEKKGQVIWIWDYQEQKFPIDGIDEIRFQVQSVSYPPIPVEQPKESKPFAPMVIMGS 180

Query: 543 IDFDGLGPTSWW 578
           +D+DGLGP SWW
Sbjct: 181 LDYDGLGPVSWW 192


>ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Vitis
           vinifera] gi|296086693|emb|CBI32328.3| unnamed protein
           product [Vitis vinifera]
          Length = 192

 Score =  249 bits (637), Expect = 2e-64
 Identities = 119/192 (61%), Positives = 148/192 (77%), Gaps = 7/192 (3%)
 Frame = +3

Query: 24  MFFLSLIEHTXXXXXXXXXXXXXQAIKEELETLFLDKVIPNLGLCVSVYDIRSINGGFIF 203
           MFFLSLIEHT             +AIK ELE+LFLDKV+ NLGLC+SVYDIRSI+GGF+F
Sbjct: 1   MFFLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVLANLGLCISVYDIRSIDGGFVF 60

Query: 204 PGDGASTFTVEFRLIMFRPFVGEILSGEVEESDANGLRLSLGFFKDIMLPVHLLPN---- 371
           PGDGAST+TVEFRL+MFRPFVGEI++ +++ESDANGL+LSLGFF DI +PVHL+PN    
Sbjct: 61  PGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLQLSLGFFDDIYIPVHLMPNPCHC 120

Query: 372 ---PSTFADGKWTWDFGGVELPIEKEEEIRFRVHSINYPSIPVEQEKDAKPFAPMVITAS 542
              P   +   W WD+   + PI+  +EIRF+V S++YP IPVEQ K++KPFAPM+I  S
Sbjct: 121 EPDPENKSQVIWIWDYQEQKFPIDGLDEIRFQVQSVSYPPIPVEQPKESKPFAPMMIMGS 180

Query: 543 IDFDGLGPTSWW 578
           +D+DGLGP SWW
Sbjct: 181 LDYDGLGPVSWW 192


>ref|XP_004135978.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
           [Cucumis sativus] gi|449523449|ref|XP_004168736.1|
           PREDICTED: DNA-directed RNA polymerase III subunit
           RPC8-like [Cucumis sativus]
          Length = 226

 Score =  217 bits (552), Expect = 2e-54
 Identities = 110/208 (52%), Positives = 139/208 (66%), Gaps = 23/208 (11%)
 Frame = +3

Query: 24  MFFLSLIEHTXXXXXXXXXXXXXQAIKEELETLFLDKVIPNLGLCVSVYDIRSINGGFIF 203
           MF+LS IEHT              AIK ELE LF+DKV+ NLGLC+SVYDIRS++GGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 204 PGDGASTFTVEFRLIMFRPFVGEILSGEVEESDANGLRLSLGFFKDIMLPVHLLPNPSTF 383
           P DGA+T+ V F LI+FRPF GE++ G+V+ES+ NGLR+SLGFF+DI +PV L+P+ S F
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 384 ADG-------KWTWDFGGVELPIEKEEEIRFRVHSINYPSIPVEQEKDA----------- 509
                     +W W +  V   I + +EI+F+VHSI YP+I VEQ K++           
Sbjct: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK 180

Query: 510 -----KPFAPMVITASIDFDGLGPTSWW 578
                KPFAPMVITAS+D DGLGP SWW
Sbjct: 181 ESINVKPFAPMVITASLDQDGLGPVSWW 208


>ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
           [Ricinus communis] gi|223539824|gb|EEF41404.1|
           DNA-directed RNA polymerase III 25 kD polypeptide,
           putative [Ricinus communis]
          Length = 194

 Score =  212 bits (540), Expect = 4e-53
 Identities = 107/196 (54%), Positives = 136/196 (69%), Gaps = 11/196 (5%)
 Frame = +3

Query: 24  MFFLSLIEHTXXXXXXXXXXXXXQAIKEELETLFLDKVIPNLGLCVSVYDIRSINGGFIF 203
           MF+LS IEHT              A+K+ELE +FLDKVI NLGLC+SVYD+  I+GGFIF
Sbjct: 1   MFYLSEIEHTLRLPPSLLSLPLQDAVKKELEIIFLDKVIANLGLCISVYDVTHIDGGFIF 60

Query: 204 PGDGASTFTVEFRLIMFRPFVGEILSGEVEESDANGLRLSLGFFKDIMLPVHLLPNPSTF 383
           PGDGAST+TV FR+++FRPFVGEI+  +++ES+ +GLRLSLGFF DI +P H LP PS  
Sbjct: 61  PGDGASTYTVRFRIVVFRPFVGEIIVAKLKESNNDGLRLSLGFFDDIYIPSHRLPKPSYS 120

Query: 384 ADGK-------WTWDF----GGVELPIEKEEEIRFRVHSINYPSIPVEQEKDAKPFAPMV 530
                      W W+F      +E  I+  +EI+FRV S+ YP +P+EQ++  KPFAPMV
Sbjct: 121 QQDPENRYQAIWIWEFVSEDNKMEFNIDGLDEIKFRVDSVKYPPVPLEQQE--KPFAPMV 178

Query: 531 ITASIDFDGLGPTSWW 578
           IT SID +GLGP SWW
Sbjct: 179 ITGSIDDEGLGPVSWW 194


>ref|NP_001241897.1| uncharacterized protein LOC100800770 [Glycine max]
           gi|255644932|gb|ACU22966.1| unknown [Glycine max]
          Length = 214

 Score =  211 bits (538), Expect = 8e-53
 Identities = 106/206 (51%), Positives = 134/206 (65%), Gaps = 21/206 (10%)
 Frame = +3

Query: 24  MFFLSLIEHTXXXXXXXXXXXXXQAIKEELETLFLDKVIPNLGLCVSVYDIRSINGGFIF 203
           MF+LS IEH              +AI  ELE LFLDKVI NLGLC+SVYDIRSI+GGFIF
Sbjct: 1   MFYLSKIEHKLPLPPSRFVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIF 60

Query: 204 PGDGASTFTVEFRLIMFRPFVGEILSGEVEESDANGLRLSLGFFKDIMLPVHLLPNPSTF 383
           PGDGA T+TV F LIMFRPF  EI++  +  SDA+GLRL++GFF DI +P   LP+P+ F
Sbjct: 61  PGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADGLRLTIGFFDDIYIPASRLPDPNHF 120

Query: 384 AD---------------------GKWTWDFGGVELPIEKEEEIRFRVHSINYPSIPVEQE 500
            +                     G W WD+   E PI+  +  +FRV +++YP IPVEQ 
Sbjct: 121 VETEQKKRVFSGQESTTNSSSKKGVWYWDYNEQEYPIQDTDVTKFRVTNVSYPQIPVEQP 180

Query: 501 KDAKPFAPMVITASIDFDGLGPTSWW 578
           K++KPFAPM+I+ ++D DGLGP SWW
Sbjct: 181 KESKPFAPMLISGAMDDDGLGPVSWW 206