BLASTX nr result
ID: Cimicifuga21_contig00004860
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00004860
(960 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris... 357 e-116
gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris... 357 e-115
ref|NP_176347.1| light-harvesting complex I chlorophyll a/b bind... 352 e-114
ref|XP_002524566.1| chlorophyll A/B binding protein, putative [R... 352 e-114
dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Ar... 352 e-113
>gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 357 bits (917), Expect(2) = e-116
Identities = 175/221 (79%), Positives = 185/221 (83%), Gaps = 6/221 (2%)
Frame = -3
Query: 850 RQLFGGA------GKAVIGSRKSSLVVRAASTPPVKQGASRPLWFASKQSLTYLDGSLPG 689
RQL GG ++ SRK+S VV+AASTPPVKQGA R LWFASKQSL+YLDGSLPG
Sbjct: 15 RQLLGGRPVQWTPSRSFSSSRKASFVVKAASTPPVKQGADRQLWFASKQSLSYLDGSLPG 74
Query: 688 DYGFDPLGLSDPEGTGGFIEPNWLAYGEIINGRFAMLGAAGAIAPEIFGKLGLIPAETAL 509
D+GFDPLGLSDPEGTGGFIEP WLAYGEIINGR+AMLG AGAIAPEI GKLGLIP ETAL
Sbjct: 75 DFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGLIPPETAL 134
Query: 508 PWFQTGVIPPAGTYNYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMSKQYFLGFEKYL 329
PWFQTGVIPPAGTY+YWAD YTLFVLEMALMGFAEHRRFQDWAKPGSM KQYFLGFEK+L
Sbjct: 135 PWFQTGVIPPAGTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKFL 194
Query: 328 GGSDNPAYPGGPIFNPLGFGXXXXXXXXXXXXXXKNGRLAM 206
GGS +PAYPGGPIFNPLGFG KNGRLAM
Sbjct: 195 GGSGDPAYPGGPIFNPLGFGKDEKSMKELKLKEVKNGRLAM 235
Score = 87.4 bits (215), Expect(2) = e-116
Identities = 40/44 (90%), Positives = 44/44 (100%)
Frame = -1
Query: 132 NGRLAMLAILGYFVQGLVTGVGPFQNLLDHLSDPVNNNILTSLK 1
NGRLAMLAILG+F+QGLVTGVGPFQNLLDHL+DPVNNN+LTSLK
Sbjct: 230 NGRLAMLAILGFFIQGLVTGVGPFQNLLDHLADPVNNNVLTSLK 273
>gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 357 bits (915), Expect(2) = e-115
Identities = 175/221 (79%), Positives = 185/221 (83%), Gaps = 6/221 (2%)
Frame = -3
Query: 850 RQLFGGAG------KAVIGSRKSSLVVRAASTPPVKQGASRPLWFASKQSLTYLDGSLPG 689
RQL GG ++ SRK+S VV+AASTPPVKQGA R LWFASKQSL+YLDGSLPG
Sbjct: 15 RQLLGGRPVQWTPTRSFSSSRKASFVVKAASTPPVKQGADRQLWFASKQSLSYLDGSLPG 74
Query: 688 DYGFDPLGLSDPEGTGGFIEPNWLAYGEIINGRFAMLGAAGAIAPEIFGKLGLIPAETAL 509
D+GFDPLGLSDPEGTGGFIEP WLAYGEIINGR+AMLG AGAIAPEI GKLGLIP ETAL
Sbjct: 75 DFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGLIPPETAL 134
Query: 508 PWFQTGVIPPAGTYNYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMSKQYFLGFEKYL 329
PWFQTGVIPPAGTY+YWAD YTLFVLEMALMGFAEHRRFQDWAKPGSM KQYFLGFEK+L
Sbjct: 135 PWFQTGVIPPAGTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKFL 194
Query: 328 GGSDNPAYPGGPIFNPLGFGXXXXXXXXXXXXXXKNGRLAM 206
GGS +PAYPGGPIFNPLGFG KNGRLAM
Sbjct: 195 GGSGDPAYPGGPIFNPLGFGKDERSMKELKLKEVKNGRLAM 235
Score = 87.4 bits (215), Expect(2) = e-115
Identities = 40/44 (90%), Positives = 44/44 (100%)
Frame = -1
Query: 132 NGRLAMLAILGYFVQGLVTGVGPFQNLLDHLSDPVNNNILTSLK 1
NGRLAMLAILG+F+QGLVTGVGPFQNLLDHL+DPVNNN+LTSLK
Sbjct: 230 NGRLAMLAILGFFIQGLVTGVGPFQNLLDHLADPVNNNVLTSLK 273
>ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana] gi|334183551|ref|NP_001185280.1|
light-harvesting complex I chlorophyll a/b binding
protein 3 [Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III
chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll
a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll
a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I
chlorophyll a/b binding protein 3 [Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I
chlorophyll a/b binding protein 3 [Arabidopsis thaliana]
Length = 273
Score = 352 bits (904), Expect(2) = e-114
Identities = 171/215 (79%), Positives = 178/215 (82%)
Frame = -3
Query: 850 RQLFGGAGKAVIGSRKSSLVVRAASTPPVKQGASRPLWFASKQSLTYLDGSLPGDYGFDP 671
RQ+FG A +KSS VV+AA+TPPVKQGA+RPLWFAS QSL+YLDGSLPGDYGFDP
Sbjct: 19 RQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDGSLPGDYGFDP 78
Query: 670 LGLSDPEGTGGFIEPNWLAYGEIINGRFAMLGAAGAIAPEIFGKLGLIPAETALPWFQTG 491
LGLSDPEGTGGFIEP WLAYGEIINGRFAMLGAAGAIAPEI GK GLIPAETALPWFQTG
Sbjct: 79 LGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTG 138
Query: 490 VIPPAGTYNYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMSKQYFLGFEKYLGGSDNP 311
VIPPAGTY YWAD+YTLFVLEMALMGFAEHRR QDW PGSM KQYFLG EK L GS NP
Sbjct: 139 VIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNP 198
Query: 310 AYPGGPIFNPLGFGXXXXXXXXXXXXXXKNGRLAM 206
AYPGGP FNPLGFG KNGRLAM
Sbjct: 199 AYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAM 233
Score = 87.8 bits (216), Expect(2) = e-114
Identities = 40/44 (90%), Positives = 44/44 (100%)
Frame = -1
Query: 132 NGRLAMLAILGYFVQGLVTGVGPFQNLLDHLSDPVNNNILTSLK 1
NGRLAMLAILGYF+QGLVTGVGP+QNLLDHL+DPVNNN+LTSLK
Sbjct: 228 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 271
>ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding
protein, putative [Ricinus communis]
Length = 273
Score = 352 bits (903), Expect(2) = e-114
Identities = 170/215 (79%), Positives = 178/215 (82%)
Frame = -3
Query: 850 RQLFGGAGKAVIGSRKSSLVVRAASTPPVKQGASRPLWFASKQSLTYLDGSLPGDYGFDP 671
RQ+ G + SS VVRA+STPPVKQGA R LWFASKQSLTYLDGSLPGD+GFDP
Sbjct: 19 RQILGARSSFGSSRKSSSFVVRASSTPPVKQGADRQLWFASKQSLTYLDGSLPGDFGFDP 78
Query: 670 LGLSDPEGTGGFIEPNWLAYGEIINGRFAMLGAAGAIAPEIFGKLGLIPAETALPWFQTG 491
LGLSDPEGTGGFIEP WLAYGEIINGRFAMLGAAGAIAPEI GK GLIP ETALPWFQTG
Sbjct: 79 LGLSDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPPETALPWFQTG 138
Query: 490 VIPPAGTYNYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMSKQYFLGFEKYLGGSDNP 311
VIPPAGTY+YWAD YTLFV EMALMGFAEHRRFQDWAKPGSM KQYFLG EK+LGGS +P
Sbjct: 139 VIPPAGTYDYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDP 198
Query: 310 AYPGGPIFNPLGFGXXXXXXXXXXXXXXKNGRLAM 206
AYPGGP+FNPLGFG KNGRLAM
Sbjct: 199 AYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAM 233
Score = 88.2 bits (217), Expect(2) = e-114
Identities = 41/44 (93%), Positives = 44/44 (100%)
Frame = -1
Query: 132 NGRLAMLAILGYFVQGLVTGVGPFQNLLDHLSDPVNNNILTSLK 1
NGRLAMLAILGYFVQGLVTGVGP+QNLLDHL+DPVNNN+LTSLK
Sbjct: 228 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 271
>dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 352 bits (904), Expect(2) = e-113
Identities = 171/215 (79%), Positives = 178/215 (82%)
Frame = -3
Query: 850 RQLFGGAGKAVIGSRKSSLVVRAASTPPVKQGASRPLWFASKQSLTYLDGSLPGDYGFDP 671
RQ+FG A +KSS VV+AA+TPPVKQGA+RPLWFAS QSL+YLDGSLPGDYGFDP
Sbjct: 19 RQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDGSLPGDYGFDP 78
Query: 670 LGLSDPEGTGGFIEPNWLAYGEIINGRFAMLGAAGAIAPEIFGKLGLIPAETALPWFQTG 491
LGLSDPEGTGGFIEP WLAYGEIINGRFAMLGAAGAIAPEI GK GLIPAETALPWFQTG
Sbjct: 79 LGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTG 138
Query: 490 VIPPAGTYNYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMSKQYFLGFEKYLGGSDNP 311
VIPPAGTY YWAD+YTLFVLEMALMGFAEHRR QDW PGSM KQYFLG EK L GS NP
Sbjct: 139 VIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNP 198
Query: 310 AYPGGPIFNPLGFGXXXXXXXXXXXXXXKNGRLAM 206
AYPGGP FNPLGFG KNGRLAM
Sbjct: 199 AYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAM 233
Score = 85.1 bits (209), Expect(2) = e-113
Identities = 39/44 (88%), Positives = 43/44 (97%)
Frame = -1
Query: 132 NGRLAMLAILGYFVQGLVTGVGPFQNLLDHLSDPVNNNILTSLK 1
NGRLAMLAILGYF+QGLVTGVGP+QNLLDHL+ PVNNN+LTSLK
Sbjct: 228 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLAGPVNNNVLTSLK 271