BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00004799
         (1923 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mi...   615   e-173
ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus ...   586   e-165
gb|ACJ85562.1| unknown [Medicago truncatula] gi|388491044|gb|AFK...   584   e-164
ref|XP_002300673.1| predicted protein [Populus trichocarpa] gi|2...   583   e-164
ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mi...   581   e-163

>ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Vitis
            vinifera]
          Length = 503

 Score =  615 bits (1587), Expect = e-173
 Identities = 318/482 (65%), Positives = 363/482 (75%), Gaps = 23/482 (4%)
 Frame = -3

Query: 1705 RKPRYKRRKVAIFLAYCGVGYQGMQKNPGAKTIEGELEEALYHSGGVPEPDRGKPKRFDW 1526
            +KPRYKRRK+AIF AYCGVGYQGMQKNPGAKTIEG+LEEAL+ SG VPE DRG PKRFDW
Sbjct: 32   KKPRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDW 91

Query: 1525 ARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSHLPNQIRIFGLKRVTNSFSAKKFCDR 1346
            ARSARTDKGVSAVGQVVSGRFYIDPPG V+RLNS+LP QIRIFG KRVT SF+AKKFCDR
Sbjct: 92   ARSARTDKGVSAVGQVVSGRFYIDPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFCDR 151

Query: 1345 RRYVYLIPVFALDHNSHPNRENVLASLGSENELVKCLECSERGRKVSGVMGRHGSESKMD 1166
            RRYVYLIPVFALD +SHP+RE+VLAS+GSENELVKCLECSERGRKV G+MG+   ESK+ 
Sbjct: 152  RRYVYLIPVFALDPSSHPDRESVLASVGSENELVKCLECSERGRKVVGIMGKRSFESKVS 211

Query: 1165 ENEPAVVE-----------VKEDTLECHSVQCGNVDXXXXXXXXXXXXXXXXXXXXETME 1019
             ++   VE           +K +  E       N                          
Sbjct: 212  VDDREDVEGESKNIVGAAILKSEAKEESMASSDNRHDGNSISQPIKEGRCFQDNETSEST 271

Query: 1018 LNSVHCSNGEEKGVSENE------------GGFCYGEKEKETFNRILNHYVGTHNFHNFT 875
             +S   S   E GVS +E             GFCYG+KE+E FNRIL HYVGTHNFHNFT
Sbjct: 272  PDS-RASAQNEPGVSHSEQSDKGENKLEKGSGFCYGDKERERFNRILGHYVGTHNFHNFT 330

Query: 874  TRIKAEDPSAIRYIISFTANSVVTVDGMDFVKCEVVGQSFMLHQIRKLIGLAVAIMRNCA 695
            TRIKAEDPSA R+I+SF  N++VTV+G++FVKCEVVGQSFMLHQIRK+IGLAVAIMRN A
Sbjct: 331  TRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNVA 390

Query: 694  PESLIDIALKKDVNITVPTAPEVGLYLDECFFPSYNQKWRDSHEEISMEAFAEQAEDFKM 515
            PESL++ AL KDVNI VPTAPEVGLYLDECFF SYN+KWRDSHEE+SM+A+AE+AE+FKM
Sbjct: 391  PESLLETALLKDVNINVPTAPEVGLYLDECFFSSYNKKWRDSHEEVSMKAYAEEAEEFKM 450

Query: 514  KQVYSHIAAMEQKEGSVAVWLHSLNYRNYPDLQFGEDNVVATSGVEDNGAGTNGENIQVE 335
            K VYSHIAA E KEG VA+WLHSLN+RNYPDL  G           DNGA ++G+N + E
Sbjct: 451  KHVYSHIAATEHKEGVVALWLHSLNHRNYPDLCIG-----------DNGAASDGKNGEEE 499

Query: 334  NV 329
             +
Sbjct: 500  TM 501


>ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223551320|gb|EEF52806.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 584

 Score =  586 bits (1510), Expect = e-165
 Identities = 320/525 (60%), Positives = 370/525 (70%), Gaps = 56/525 (10%)
 Frame = -3

Query: 1705 RKPRYKRRKVAIFLAYCGVGYQGMQKNPGAKTIEGELEEALYHSGGVPEPDRGKPKRFDW 1526
            +K RYKRRK+AIF AYCGVGYQGMQKNPGAKTIEG+LEEAL+HSG VPE DRG PKR+DW
Sbjct: 47   KKQRYKRRKMAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVPEQDRGCPKRYDW 106

Query: 1525 ARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSHLPNQIRIFGLKRVTNSFSAKKFCDR 1346
            ARSARTDKGVSAVGQV+SGRFY+DPPG VDRLNS LP+QIRIFG KRVT SF+AKKFCDR
Sbjct: 107  ARSARTDKGVSAVGQVISGRFYVDPPGLVDRLNSILPSQIRIFGYKRVTASFNAKKFCDR 166

Query: 1345 RRYVYLIPVFALDHNSHPNRENVLASLGSENELVKCLECSERGRKVSGVMGRHGSESKMD 1166
            RRYVYLIPVFALD +SH +RE+VLASLGS +ELVKCLECSERGRKV G +G+   ESK +
Sbjct: 167  RRYVYLIPVFALDPSSHRDRESVLASLGSGDELVKCLECSERGRKVIGAVGKRSFESKSE 226

Query: 1165 ENEPAVV----------EVKEDTL----ECHSVQC------------------------- 1103
              +  ++          E+KED        H V+                          
Sbjct: 227  AFQTDILLNGGCAIANCEIKEDISMSMDNAHGVRMHSEFVEQTNVSHNEDSETESAMPRT 286

Query: 1102 --------GNV--DXXXXXXXXXXXXXXXXXXXXETMELNSVHCSNGEEKGVSENE---- 965
                    GNV  D                    ETME +S   S GEE+   E      
Sbjct: 287  DILSNSEDGNVKSDSKQEEVMVSEDAADGGNKESETMEKDS-KASVGEERVNGEEHVMKG 345

Query: 964  GGFCYGEKEKETFNRILNHYVGTHNFHNFTTRIKAEDPSAIRYIISFTANSVVTVDGMDF 785
              FCYGE+EKE FNRIL +YVG+HNFHNFTTR KAEDPSA RYIISF A + VTV+G++F
Sbjct: 346  SEFCYGEEEKEKFNRILKYYVGSHNFHNFTTRTKAEDPSAQRYIISFDARTTVTVEGIEF 405

Query: 784  VKCEVVGQSFMLHQIRKLIGLAVAIMRNCAPESLIDIALKKDVNITVPTAPEVGLYLDEC 605
            VKCEV+GQSFMLHQIRK+IGLAVAIMRNCAPESLI  AL+KDV I VPTAPEVGLYLDEC
Sbjct: 406  VKCEVIGQSFMLHQIRKMIGLAVAIMRNCAPESLISTALQKDVKINVPTAPEVGLYLDEC 465

Query: 604  FFPSYNQKWRDSHEEISMEAFAEQAEDFKMKQVYSHIAAMEQKEGSVAVWLHSLNYRNYP 425
            FF SYNQKW+D HEE+ M+ + E AEDFKMK +YSHIA+ EQKEG V +WLHSLNYRNYP
Sbjct: 466  FFTSYNQKWKD-HEELCMKDYEEVAEDFKMKYIYSHIASTEQKEGVVGLWLHSLNYRNYP 524

Query: 424  DLQFG---EDNVVATSGVEDNGAGTNGENIQVENVGKEIPVEANG 299
            DL+F    + N   ++ V +NG   + E+ Q +N  ++  VE NG
Sbjct: 525  DLRFCYTLDANNEKSTEVVNNGDANSEESAQEKN-SEDADVEKNG 568


>gb|ACJ85562.1| unknown [Medicago truncatula] gi|388491044|gb|AFK33588.1| unknown
            [Medicago truncatula]
          Length = 530

 Score =  584 bits (1506), Expect = e-164
 Identities = 317/532 (59%), Positives = 367/532 (68%), Gaps = 27/532 (5%)
 Frame = -3

Query: 1822 STSPTLQXXXXXXXXPKKLKMXXXXXXXXXXXXXXXXXDRKPRYKRRKVAIFLAYCGVGY 1643
            S+SP L          KK+KM                   K RYKRRKVAIF AYCGVGY
Sbjct: 11   SSSPALPSAVAEEPATKKVKMSTTTSDDEGCTTAEGS---KVRYKRRKVAIFFAYCGVGY 67

Query: 1642 QGMQKNPGAKTIEGELEEALYHSGGVPEPDRGKPKRFDWARSARTDKGVSAVGQVVSGRF 1463
            QGMQKNPGAKTIEGELEEALY SG VPE DRG  KR+DWARSARTDKGVSAVGQVVSGRF
Sbjct: 68   QGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDKGVSAVGQVVSGRF 127

Query: 1462 YIDPPGFVDRLNSHLPNQIRIFGLKRVTNSFSAKKFCDRRRYVYLIPVFALDHNSHPNRE 1283
            YIDPPGFVDRLNS+LP+QIRIFG KRVT SFSAKKFCDRRRYVYLIPVFALD   H +RE
Sbjct: 128  YIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIPVFALDPCCHRDRE 187

Query: 1282 NVLASLGSENELVKCLECSERGRKVSGVMGR-------------HGSESKMDENEPAVVE 1142
             VLASLGSENELVKCL CSERGRKV GV+G              +GS +K D  +  V +
Sbjct: 188  TVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLELEAVDVENGSSNKNDVVDSGVTK 247

Query: 1141 VKEDTLECHSVQCGNVDXXXXXXXXXXXXXXXXXXXXETMELNSVHCSNG---------- 992
              E +L        +++                       + + V   NG          
Sbjct: 248  DVEVSLS--KGDDNHLNKESINDNEGKVSVEEVNSKTVVSDQDEVAPINGGSENNLGILE 305

Query: 991  EEK----GVSENEGGFCYGEKEKETFNRILNHYVGTHNFHNFTTRIKAEDPSAIRYIISF 824
            EEK      + N  GFCYGEKE+E FN IL  YVGTHNFHNFTTRIK EDPSA R+IISF
Sbjct: 306  EEKVNREDTAANGSGFCYGEKERERFNNILKCYVGTHNFHNFTTRIKPEDPSAKRFIISF 365

Query: 823  TANSVVTVDGMDFVKCEVVGQSFMLHQIRKLIGLAVAIMRNCAPESLIDIALKKDVNITV 644
             A++ V V+GM+FVKCE+VGQSFMLHQIRK++GLAVAIMRNCAPESLI+ AL+KDV+ITV
Sbjct: 366  DASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVSITV 425

Query: 643  PTAPEVGLYLDECFFPSYNQKWRDSHEEISMEAFAEQAEDFKMKQVYSHIAAMEQKEGSV 464
            PTAPEVGLYLDECFF SYNQKW+D+HEE+SM+A+ ++AEDFKM+ +Y HIA+ E KEG+V
Sbjct: 426  PTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFKMQYIYPHIASTEYKEGTV 485

Query: 463  AVWLHSLNYRNYPDLQFGEDNVVATSGVEDNGAGTNGENIQVENVGKEIPVE 308
             +WLHSLN+RNYPDL           G+ D    TN + ++V+   K+  +E
Sbjct: 486  GLWLHSLNHRNYPDL-----------GILDGEGVTNDKKVEVDMNDKKTEIE 526


>ref|XP_002300673.1| predicted protein [Populus trichocarpa] gi|222842399|gb|EEE79946.1|
            predicted protein [Populus trichocarpa]
          Length = 429

 Score =  583 bits (1504), Expect = e-164
 Identities = 295/440 (67%), Positives = 337/440 (76%), Gaps = 9/440 (2%)
 Frame = -3

Query: 1705 RKPRYKRRKVAIFLAYCGVGYQGMQKNPGAKTIEGELEEALYHSGGVPEPDRGKPKRFDW 1526
            +K RYKRRK+AIF AYCGVGYQGMQKNPGAKTIEG+LEEAL+H+G VPE DRG PKR+DW
Sbjct: 10   KKQRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEQDRGIPKRYDW 69

Query: 1525 ARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSHLPNQIRIFGLKRVTNSFSAKKFCDR 1346
            ARSARTDKGVSAVGQVVSGRFYIDPPG V+RL+S+L  Q RIFG KRVT SF+AKKFCDR
Sbjct: 70   ARSARTDKGVSAVGQVVSGRFYIDPPGLVERLHSNLSPQFRIFGYKRVTGSFNAKKFCDR 129

Query: 1345 RRYVYLIPVFALDHNSHPNRENVLASLGSENELVKCLECSERGRKVSGVMGRHGSE---- 1178
            RRYVYLIPVFALD  SH +RE+VLASL S +EL+KCLECSERGRKV+G +G+   E    
Sbjct: 130  RRYVYLIPVFALDPCSHRDRESVLASLRSGSELIKCLECSERGRKVAGAVGKRSFELTDN 189

Query: 1177 SKMDENEPAVVEVKEDTLECHSVQCGNVDXXXXXXXXXXXXXXXXXXXXETMELNSVHCS 998
            S  D++     E+KE+  E                                     V   
Sbjct: 190  SSNDKDASVKSEIKEEVDEI-----------------------------------IVSVE 214

Query: 997  NGEEKGVSENE-----GGFCYGEKEKETFNRILNHYVGTHNFHNFTTRIKAEDPSAIRYI 833
            NG+++     E       FCYGEKEKE FNRIL +YVG+HNFHNFTTR KAEDPSA RYI
Sbjct: 215  NGDDEKTKSKEEMVKGSSFCYGEKEKERFNRILGYYVGSHNFHNFTTRTKAEDPSARRYI 274

Query: 832  ISFTANSVVTVDGMDFVKCEVVGQSFMLHQIRKLIGLAVAIMRNCAPESLIDIALKKDVN 653
            +SF A + V V+G++FVKCEVVGQSFMLHQIRK+IG+AVAIMRNCAPESLI  AL+KDVN
Sbjct: 275  VSFEAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGVAVAIMRNCAPESLIQTALQKDVN 334

Query: 652  ITVPTAPEVGLYLDECFFPSYNQKWRDSHEEISMEAFAEQAEDFKMKQVYSHIAAMEQKE 473
            I VPTAPEVGLYLDECFF SYNQKW+DSHEEISM+ + E+AEDFKMK +YSHIA  E KE
Sbjct: 335  INVPTAPEVGLYLDECFFTSYNQKWKDSHEEISMKDYEEEAEDFKMKHIYSHIATTEHKE 394

Query: 472  GSVAVWLHSLNYRNYPDLQF 413
            GSVA+WLHSLN+RNYPDL+F
Sbjct: 395  GSVALWLHSLNHRNYPDLRF 414


>ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Cucumis
            sativus]
          Length = 519

 Score =  581 bits (1498), Expect = e-163
 Identities = 296/451 (65%), Positives = 340/451 (75%), Gaps = 21/451 (4%)
 Frame = -3

Query: 1705 RKPRYKRRKVAIFLAYCGVGYQGMQKNPGAKTIEGELEEALYHSGGVPEPDRGKPKRFDW 1526
            +K RYKRRKVAIF AYCGVGYQGMQKNPGAKTIE +LEEALY +G VPE DRG  KR+DW
Sbjct: 48   KKQRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDW 107

Query: 1525 ARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSHLPNQIRIFGLKRVTNSFSAKKFCDR 1346
            ARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNS+L  QIRIFG KRVT SF+AKKFCDR
Sbjct: 108  ARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDR 167

Query: 1345 RRYVYLIPVFALDHNSHPNRENVLASLGSENELVKCLECSERGRKVSGVMGRHGSESKMD 1166
            RRYVYLIPVFALD N H +RE+V ASLGS+NELVKCLECSERGRKV G++G+   E K  
Sbjct: 168  RRYVYLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLIGKRNFEVKTA 227

Query: 1165 ENEPAVVEVKEDTLECHSVQCGNVDXXXXXXXXXXXXXXXXXXXXETMELN--------- 1013
              E  +     + +E   VQ   V                      T ELN         
Sbjct: 228  ITESDISSNTVNAIEVSDVQANGVLEDSATTSDSNKQTSVLVENTAT-ELNVGSEGTAKS 286

Query: 1012 ------------SVHCSNGEEKGVSENEGGFCYGEKEKETFNRILNHYVGTHNFHNFTTR 869
                         +  S     G  ++ G F YGE+EK  FNRIL HYVGTHNFHNFTTR
Sbjct: 287  ESSEMSGLGSDSEIVVSKESVNGKEKSSGSFKYGEEEKARFNRILKHYVGTHNFHNFTTR 346

Query: 868  IKAEDPSAIRYIISFTANSVVTVDGMDFVKCEVVGQSFMLHQIRKLIGLAVAIMRNCAPE 689
             KAEDP+A R+I+SF A+++V V+G++FVKCEVVGQSFMLHQIRK++GLAVAIMRNCAPE
Sbjct: 347  TKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAPE 406

Query: 688  SLIDIALKKDVNITVPTAPEVGLYLDECFFPSYNQKWRDSHEEISMEAFAEQAEDFKMKQ 509
            SLI+ AL+KDVNI VPTAPEVGLYLDEC F SYNQKW+D+HEE+SM+A+ E AEDFKMKQ
Sbjct: 407  SLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEAAEDFKMKQ 466

Query: 508  VYSHIAAMEQKEGSVAVWLHSLNYRNYPDLQ 416
            +YSHIA+ E K+G+VA+WLHSLN+RNYPDL+
Sbjct: 467  IYSHIASTEHKDGAVALWLHSLNHRNYPDLR 497