BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00004372
         (1191 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532570.1| geranyl geranyl pyrophosphate synthase, puta...   216   7e-54
dbj|BAF98300.1| geranyl-diphosphate synthase [Hevea brasiliensis]     214   3e-53
gb|AEL29573.1| geranyl-diphosphate synthase [Medicago sativa]         207   5e-51
ref|XP_003617556.1| Geranylgeranyl pyrophosphate synthase [Medic...   197   4e-48
gb|AFK47692.1| unknown [Medicago truncatula]                          196   1e-47

>ref|XP_002532570.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
            gi|223527725|gb|EEF29831.1| geranyl geranyl pyrophosphate
            synthase, putative [Ricinus communis]
          Length = 308

 Score =  216 bits (551), Expect = 7e-54
 Identities = 122/269 (45%), Positives = 165/269 (61%), Gaps = 3/269 (1%)
 Frame = -1

Query: 1059 ISMSQNQTSWATINSEVETHLEYALSGKQPASVFDPMNHLIFEVPRSMAPALCIAACEAV 880
            +S S     W  IN+++ETHL+ A+  + P  VF+PM+HL F  PRS APALCIAACE V
Sbjct: 40   MSNSSKIDYWTCINADIETHLKEAIPVRPPVVVFEPMHHLTFAAPRSFAPALCIAACELV 99

Query: 879  GGYKEQAIPXXXXXXXXXXXXXXHEYLQLSDTPQ--LKPMAHHLYGPNIELLTADSMVPF 706
            GG ++QA+               HE + L+D P+   +PM HH +GPNIELLT D M+PF
Sbjct: 100  GGSRDQALAAASALRLMIAAAFTHENIPLTDRPRPSARPMFHHTFGPNIELLTGDGMIPF 159

Query: 705  GYELLASMDDSTNDNSDRILRVMIEIGRAVGSQGMVNGQYMKLRSLGLEGDETAEYGMID 526
             +ELLA +++   DNSDRILRVMIEI RA+GSQGMV GQY + +     GDE      + 
Sbjct: 160  AFELLAQLNNPAQDNSDRILRVMIEISRAMGSQGMVEGQYNEFQYDQSVGDELFHVAWLR 219

Query: 525  KAFEKKGGALYSXXXXXXXXXXXGSDEEIEKLRRYGLYVGMIHHIMVHDGLGREKRLIKL 346
               +KK GA ++           G++EEIEKLRRYGLYVG I  I  +   G E+  +K 
Sbjct: 220  DVCKKKEGASHACAGACGAILGGGNEEEIEKLRRYGLYVGTIQGI-YNKVEGNEEWSLKE 278

Query: 345  ADSMRFLALKELEGM-KDKNIETICSFLD 262
             + +R LALKEL+   +++ +  ICS ++
Sbjct: 279  VNKLRDLALKELKDFNEEEKVRAICSLVE 307


>dbj|BAF98300.1| geranyl-diphosphate synthase [Hevea brasiliensis]
          Length = 306

 Score =  214 bits (545), Expect = 3e-53
 Identities = 116/273 (42%), Positives = 172/273 (63%), Gaps = 1/273 (0%)
 Frame = -1

Query: 1092 HSSSSYKPTIKISMSQNQTSWATINSEVETHLEYALSGKQPASVFDPMNHLIFEVPRSMA 913
            H   S++P + ++MS +Q+ W+++N++++THL+ A+  +QP +VF+PM HLI   P++ A
Sbjct: 25   HPLFSHRPMV-VAMSTDQSYWSSVNADLDTHLKQAIPIRQPLAVFEPMRHLILSAPQTSA 83

Query: 912  PALCIAACEAVGGYKEQAIPXXXXXXXXXXXXXXHEYLQLSDTPQLKPMAHH-LYGPNIE 736
            PALCIAACE VGG++ QA+               HE L L+D P+  P     LYGPNIE
Sbjct: 84   PALCIAACELVGGHRNQAMAAASALRLVHASASTHENLPLTDRPRPMPRTRPTLYGPNIE 143

Query: 735  LLTADSMVPFGYELLASMDDSTNDNSDRILRVMIEIGRAVGSQGMVNGQYMKLRSLGLEG 556
            LL AD ++P+G+ELLA  DD+  +NS+R+LR +IEI RA+GSQG++ GQY + +    EG
Sbjct: 144  LLIADGIIPYGFELLARDDDAAENNSNRVLRAIIEISRAMGSQGVIEGQYNESQYEESEG 203

Query: 555  DETAEYGMIDKAFEKKGGALYSXXXXXXXXXXXGSDEEIEKLRRYGLYVGMIHHIMVHDG 376
            +E    G +     KK G L++           GS++EIEKLRRYGLYVGM+  I+    
Sbjct: 204  EEIFHVGWLQNVCRKKEGTLHACAGACGAILGGGSEDEIEKLRRYGLYVGMVQGILSKVD 263

Query: 375  LGREKRLIKLADSMRFLALKELEGMKDKNIETI 277
              R++  +K  + +R LALKEL+      ++TI
Sbjct: 264  -ERKEWPVKEVNKLRDLALKELKDFNQAKVKTI 295


>gb|AEL29573.1| geranyl-diphosphate synthase [Medicago sativa]
          Length = 301

 Score =  207 bits (526), Expect = 5e-51
 Identities = 125/295 (42%), Positives = 177/295 (60%), Gaps = 4/295 (1%)
 Frame = -1

Query: 1134 TTSAFPSIPKTKIHHSSSSYKPTIKISMSQNQTS-WATINSEVETHLEYALSGKQPASVF 958
            +T  F  I      H ++  KPT  + MS  QT  WA+++++VE HL+  ++ K+P  VF
Sbjct: 13   STVHFSCISNQHRSHLTTKLKPTT-VRMSMTQTPYWASLHADVEAHLKQTITIKEPLLVF 71

Query: 957  DPMNHLIFEVPRSMAPALCIAACEAVGGYKEQAIPXXXXXXXXXXXXXXHEYLQLSDTPQ 778
            +PM+HLIF  P++  PALC+AACE VGG +++AI               HE+L LSD P 
Sbjct: 72   EPMHHLIFTAPKTTVPALCLAACELVGGQRQEAISAASALLLMEAATYTHEHLPLSDRPG 131

Query: 777  LK--PMAHHLYGPNIELLTADSMVPFGYELLASMDDSTNDNSDRILRVMIEIGRAVGS-Q 607
             K  PM  H+YGPN+ELLT D +VPFG+ELLA  D    +NS+RIL+VM+EI RAVGS  
Sbjct: 132  PKPGPMIDHVYGPNVELLTGDGIVPFGFELLARSDG--GENSERILKVMVEISRAVGSGG 189

Query: 606  GMVNGQYMKLRSLGLEGDETAEYGMIDKAFEKKGGALYSXXXXXXXXXXXGSDEEIEKLR 427
            G+++ QYMK    G +GDE      I +  EK  G L+S           G +EEIE+LR
Sbjct: 190  GVIDAQYMKTLGGGSDGDEICHVEEIRRVVEKYEGRLHSCGAVCGGVLGGGCEEEIERLR 249

Query: 426  RYGLYVGMIHHIMVHDGLGREKRLIKLADSMRFLALKELEGMKDKNIETICSFLD 262
            ++G YVG+I   M+  G   + + +  A   R LA++EL+  KDK ++ I +FL+
Sbjct: 250  KFGFYVGIIQG-MIKWGFKEDHKEVVEA---RNLAIQELKFFKDKEVDAIKTFLN 300


>ref|XP_003617556.1| Geranylgeranyl pyrophosphate synthase [Medicago truncatula]
            gi|355518891|gb|AET00515.1| Geranylgeranyl pyrophosphate
            synthase [Medicago truncatula]
          Length = 297

 Score =  197 bits (501), Expect = 4e-48
 Identities = 119/303 (39%), Positives = 181/303 (59%), Gaps = 12/303 (3%)
 Frame = -1

Query: 1134 TTSAFPSIPKTKIHHSSSSYK-----------PTIKISMSQNQTSWATINSEVETHLEYA 988
            TT+++ +  K+ +H S  S +            T+++SM+Q    WA++++++E HL+  
Sbjct: 3    TTTSYVTNVKSTVHFSCISNQHRSHLNTKLKSTTLRMSMTQTPY-WASLHADIEAHLKQT 61

Query: 987  LSGKQPASVFDPMNHLIFEVPRSMAPALCIAACEAVGGYKEQAIPXXXXXXXXXXXXXXH 808
            ++ K+P  VF+PM+HLIF  P++  PALC+A CE VGG + QAI               H
Sbjct: 62   ITIKEPLVVFEPMHHLIFTAPKTTVPALCLATCELVGGQRHQAISAASALLLMEAATYTH 121

Query: 807  EYLQLSDTPQLKPMAHHLYGPNIELLTADSMVPFGYELLASMDDSTNDNSDRILRVMIEI 628
            E+L L+D P  +PM +H+YGPN+ELLT D +VPFG+ELLA  D    +NS+RIL+VM+EI
Sbjct: 122  EHLPLTDRP--RPMINHVYGPNMELLTGDGIVPFGFELLARSDG--GENSERILKVMVEI 177

Query: 627  GRAVGS-QGMVNGQYMKLRSLGLEGDETAEYGMIDKAFEKKGGALYSXXXXXXXXXXXGS 451
             RAVGS  G+++ QY K+   G +G+E      I    EK  G L+S           G 
Sbjct: 178  SRAVGSGGGVIDAQYGKILYSGSDGEEKCHVEEIRHVVEKYEGRLHSCGAVCGGVLGGGC 237

Query: 450  DEEIEKLRRYGLYVGMIHHIMVHDGLGREKRLIKLADSMRFLALKELEGMKDKNIETICS 271
            +EEIE+LR++G YVG+I   M+  G   + + +  A   R LA++EL+  KDK ++ I +
Sbjct: 238  EEEIERLRKFGYYVGIIQG-MIKWGFKEDHKEVVEA---RNLAIQELKFFKDKEVDAIKT 293

Query: 270  FLD 262
            FL+
Sbjct: 294  FLN 296


>gb|AFK47692.1| unknown [Medicago truncatula]
          Length = 297

 Score =  196 bits (498), Expect = 1e-47
 Identities = 119/303 (39%), Positives = 180/303 (59%), Gaps = 12/303 (3%)
 Frame = -1

Query: 1134 TTSAFPSIPKTKIHHSSSSYK-----------PTIKISMSQNQTSWATINSEVETHLEYA 988
            TT+++ +  K+ +H S  S +            T++ SM+Q    WA++++++E HL+  
Sbjct: 3    TTTSYVTNVKSTVHFSCISNQHRSHLNTKLKSTTLRTSMTQTPY-WASLHADIEAHLKQT 61

Query: 987  LSGKQPASVFDPMNHLIFEVPRSMAPALCIAACEAVGGYKEQAIPXXXXXXXXXXXXXXH 808
            ++ K+P  VF+PM+HLIF  P++  PALC+A CE VGG + QAI               H
Sbjct: 62   ITIKEPLVVFEPMHHLIFTAPKTTVPALCLATCEFVGGQRHQAISAASALLLMEAATYTH 121

Query: 807  EYLQLSDTPQLKPMAHHLYGPNIELLTADSMVPFGYELLASMDDSTNDNSDRILRVMIEI 628
            E+L L+D P  +PM +H+YGPN+ELLT D +VPFG+ELLA  D    +NS+RIL+VM+EI
Sbjct: 122  EHLPLTDRP--RPMINHVYGPNMELLTGDGIVPFGFELLARSDG--GENSERILKVMVEI 177

Query: 627  GRAVGS-QGMVNGQYMKLRSLGLEGDETAEYGMIDKAFEKKGGALYSXXXXXXXXXXXGS 451
             RAVGS  G+++ QY K+   G +G+E      I    EK  G L+S           G 
Sbjct: 178  SRAVGSGGGVIDAQYGKILYSGSDGEEKCHVEEIRHVVEKYEGRLHSCGAVCGGVLGGGC 237

Query: 450  DEEIEKLRRYGLYVGMIHHIMVHDGLGREKRLIKLADSMRFLALKELEGMKDKNIETICS 271
            +EEIE+LR++G YVG+I   M+  G   + + +  A   R LA++EL+  KDK ++ I +
Sbjct: 238  EEEIERLRKFGYYVGIIQG-MIKWGFKEDHKEVVEA---RNLAIQELKFFKDKEVDAIKT 293

Query: 270  FLD 262
            FL+
Sbjct: 294  FLN 296