BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00004341
         (1260 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      526   e-147
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      523   e-146
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   518   e-144
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...   506   e-141
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   499   e-139

>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  526 bits (1354), Expect = e-147
 Identities = 258/418 (61%), Positives = 326/418 (77%), Gaps = 1/418 (0%)
 Frame = -3

Query: 1258 GVGRRKLEFLLSHCRREYKLEFSEESIWQTELRCPQNQKQKFLLIQVLTAPRIYEKPLCS 1079
            G G RKLEFLLS+C  +YKLE   E+IWQ ELRCP +Q  K LLIQ+  APRIYEK + +
Sbjct: 126  GTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPA 185

Query: 1078 SSHSNVEPALTYFKDTSDDQWTRTTDFTTASCIGQSSAICLEIPFNCKLPGIREIFHYYK 899
            S     +P L YFKD  DDQW RTTDFT ++CIGQSS +CLE+P N +LP  RE F YYK
Sbjct: 186  SECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFRENFAYYK 245

Query: 898  EDEGKFHLESGSTFSHNLDLVPIIGPPQGLDLPFNILFKVNCLVQSGCLPGPTLDATFYG 719
            E+EG+  LESGS++S NL LVPI+ P + +DLPF ILFKVN LVQ+GC+PGP LD TFY 
Sbjct: 246  ENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYR 305

Query: 718  LVHPESVPIAHIEHALEKLYNLKECCYEPTKWLNEQYKIYRKSKHFT-KPSICLNDGVVN 542
            LV P  +   +I+HALEKLY L+ECCYEP++WL E+YK + +S+ +   P+I L++G+V 
Sbjct: 306  LVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVY 365

Query: 541  VRRVEITPSRIYFCGPEVIVSNRVLRKYHELIDNFIRVSFLDEDGKKMWSTDLSPRTVPN 362
            VRRV+ITPSR+YFCGPE+ VSNRVLR++H  IDNF+R+SF+DE+ +K+ ST++  R    
Sbjct: 366  VRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQAR---- 421

Query: 361  EIKRHTDIYRRILSTLNNGIVIGDKKFEFLAYSSSQLRDNSVWMFAPGNGVTAARIREWM 182
               R T IY+RILSTL NGIVIG+K+FEFLA+SSSQLR+NS WMFA   G+TAA IR WM
Sbjct: 422  --GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWM 479

Query: 181  GNFREIRNVAKYASRLGQSFSSSRETLTVNREEFEIIPDVEIKTNGVEYVFSDGIGRI 8
            GNF +IRNVAKYA+RLGQSFSSS ETL+V+++E  +IPD+EI  +G++YVF DGIG+I
Sbjct: 480  GNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDGIGKI 537


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  523 bits (1348), Expect = e-146
 Identities = 258/418 (61%), Positives = 326/418 (77%), Gaps = 1/418 (0%)
 Frame = -3

Query: 1258 GVGRRKLEFLLSHCRREYKLEFSEESIWQTELRCPQNQKQKFLLIQVLTAPRIYEKPLCS 1079
            G G RKLEFLLS+C  +YKLE   E+IWQ ELRCP +Q  K LLIQ+  APRIYEK + +
Sbjct: 126  GTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPA 185

Query: 1078 SSHSNVEPALTYFKDTSDDQWTRTTDFTTASCIGQSSAICLEIPFNCKLPGIREIFHYYK 899
            S     +P L YFKD  DDQW RTTDFT ++CIGQSS + LE+P N +LP  RE F YYK
Sbjct: 186  SECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFRENFAYYK 245

Query: 898  EDEGKFHLESGSTFSHNLDLVPIIGPPQGLDLPFNILFKVNCLVQSGCLPGPTLDATFYG 719
            E+EG+  LESGS++S NL LVPI+ P + +DLPF ILFKVN LVQ+GC+PGP LD TFY 
Sbjct: 246  ENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYR 305

Query: 718  LVHPESVPIAHIEHALEKLYNLKECCYEPTKWLNEQYKIYRKSKHFT-KPSICLNDGVVN 542
            LV P  +   +I+HALEKLY L+ECCYEP++WL E+YK + +S+ +   P+I L++G+V 
Sbjct: 306  LVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVY 365

Query: 541  VRRVEITPSRIYFCGPEVIVSNRVLRKYHELIDNFIRVSFLDEDGKKMWSTDLSPRTVPN 362
            VRRV+ITPSR+YFCGPE+ VSNRVLR++H  IDNF+R+SF+DE+ +K+ ST++  R    
Sbjct: 366  VRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQAR---- 421

Query: 361  EIKRHTDIYRRILSTLNNGIVIGDKKFEFLAYSSSQLRDNSVWMFAPGNGVTAARIREWM 182
               R T IY+RILSTL NGIVIG+K+FEFLA+SSSQLR+NS WMFA   G+TAA IR WM
Sbjct: 422  --GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWM 479

Query: 181  GNFREIRNVAKYASRLGQSFSSSRETLTVNREEFEIIPDVEIKTNGVEYVFSDGIGRI 8
            GNF +IRNVAKYA+RLGQSFSSS ETL+V+++E  +IPD+EI  +G++YVFSDGIG+I
Sbjct: 480  GNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGIGKI 537


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  518 bits (1333), Expect = e-144
 Identities = 263/419 (62%), Positives = 316/419 (75%)
 Frame = -3

Query: 1258 GVGRRKLEFLLSHCRREYKLEFSEESIWQTELRCPQNQKQKFLLIQVLTAPRIYEKPLCS 1079
            G G RK  F LSH   EYKLE S E+IWQ +L+ P+ Q  KFLLIQ+L AP+IYEK +  
Sbjct: 127  GSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQIYEKDVPV 186

Query: 1078 SSHSNVEPALTYFKDTSDDQWTRTTDFTTASCIGQSSAICLEIPFNCKLPGIREIFHYYK 899
             S+        YFK+  DDQW R  DFT +  IGQS A+CLE+P+  +LP  RE F YYK
Sbjct: 187  LSY--------YFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYK 238

Query: 898  EDEGKFHLESGSTFSHNLDLVPIIGPPQGLDLPFNILFKVNCLVQSGCLPGPTLDATFYG 719
            E++GKF LESGS++SHNL LVPI+GPPQG  LPF ILFK+N LVQ+GCL GPTLD +F+ 
Sbjct: 239  ENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFR 298

Query: 718  LVHPESVPIAHIEHALEKLYNLKECCYEPTKWLNEQYKIYRKSKHFTKPSICLNDGVVNV 539
            LV PE  PI+ IEHALEKLY+LKECCYEP +WL+EQY+ Y K      P+I L+ G+V V
Sbjct: 299  LVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKPVAGSPAISLDTGLVYV 358

Query: 538  RRVEITPSRIYFCGPEVIVSNRVLRKYHELIDNFIRVSFLDEDGKKMWSTDLSPRTVPNE 359
            RRV+ITP ++YFCGPEV VSNRVLR Y E IDNF+RVSFLDE+ +K+ ST +SPR   ++
Sbjct: 359  RRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRM--SK 416

Query: 358  IKRHTDIYRRILSTLNNGIVIGDKKFEFLAYSSSQLRDNSVWMFAPGNGVTAARIREWMG 179
              R T +YRRILS L NGIVIGDKKF+FLA+SSSQLRDNS WMFA   G+TAA IR WMG
Sbjct: 417  EGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMG 476

Query: 178  NFREIRNVAKYASRLGQSFSSSRETLTVNREEFEIIPDVEIKTNGVEYVFSDGIGRICP 2
            +F +IRNVAKYA+RLGQSFSSS+ETL V ++E E IPD+EI      YVFSDGIG+I P
Sbjct: 477  DFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISP 535


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score =  506 bits (1304), Expect = e-141
 Identities = 255/418 (61%), Positives = 314/418 (75%), Gaps = 1/418 (0%)
 Frame = -3

Query: 1258 GVGRRKLEFLLSHCRREYKLEFSEESIWQTELRCPQNQKQKFLLIQVLTAPRIYEKPLCS 1079
            G+G RKL F LSH   EYKL    E+IWQ EL  P+ Q  K+LLIQ+  APRIYE+ + S
Sbjct: 127  GLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYERDVPS 186

Query: 1078 SSHSNVEPALTYFKDTSDDQWTRTTDFTTASCIGQSSAICLEIPFNCKLPGIREIFHYYK 899
            SS+   +P L YF+D  D+QW RTTDFT +  IG SS++CLE+P + +LP   E F YYK
Sbjct: 187  SSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNENFFYYK 246

Query: 898  EDEGKFHLESGSTFSHNLDLVPIIGPPQGLDLPFNILFKVNCLVQSGCLPGPTLDATFYG 719
            E+EG F LESG TFS N DLVPI+GP  G++LP+NILF+VN LVQ+GCL G  LD  FY 
Sbjct: 247  ENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSMLDDIFYR 306

Query: 718  LVHPESVPIAHIEHALEKLYNLKECCYEPTKWLNEQYKIYRKSKHFTK-PSICLNDGVVN 542
            LV P  +P+  IE+ALEKLY+LKECCYEP+KW NEQYK Y  S +  + P + L+ G+V 
Sbjct: 307  LVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSLDAGLVY 366

Query: 541  VRRVEITPSRIYFCGPEVIVSNRVLRKYHELIDNFIRVSFLDEDGKKMWSTDLSPRTVPN 362
            V +V+ITP +++FCGPEV VSNRVLR+Y E IDNF+RVSF+DE+ +K+ STD+SPRT   
Sbjct: 367  VYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVSPRTSSR 426

Query: 361  EIKRHTDIYRRILSTLNNGIVIGDKKFEFLAYSSSQLRDNSVWMFAPGNGVTAARIREWM 182
               R T IY RILSTL NGIVIGDKKFEFLA+SSSQLR+NS WMFA   G+TAA IR WM
Sbjct: 427  NELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRAWM 486

Query: 181  GNFREIRNVAKYASRLGQSFSSSRETLTVNREEFEIIPDVEIKTNGVEYVFSDGIGRI 8
            G+F +IRNVA+YA+RLGQSF SS ETL+V+  E EIIPD+E+   G  Y+FSDGIG+I
Sbjct: 487  GSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSDGIGKI 544


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  499 bits (1286), Expect = e-139
 Identities = 259/417 (62%), Positives = 311/417 (74%)
 Frame = -3

Query: 1258 GVGRRKLEFLLSHCRREYKLEFSEESIWQTELRCPQNQKQKFLLIQVLTAPRIYEKPLCS 1079
            G G RK  F LSH   EYKLE S E+IWQ +LR P+ Q  KFLLIQ+L AP+IYEK +  
Sbjct: 126  GFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQIYEKDVS- 184

Query: 1078 SSHSNVEPALTYFKDTSDDQWTRTTDFTTASCIGQSSAICLEIPFNCKLPGIREIFHYYK 899
                    AL+YFK+T DDQW R  DFT +  IGQSSA+CLE+P   +LP   E F  YK
Sbjct: 185  --------ALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYK 236

Query: 898  EDEGKFHLESGSTFSHNLDLVPIIGPPQGLDLPFNILFKVNCLVQSGCLPGPTLDATFYG 719
            E++ KF LESG++FS NL LVPI+GPPQG +LPF ILFK+N LVQ+GCL GPTLD  F+ 
Sbjct: 237  ENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFR 296

Query: 718  LVHPESVPIAHIEHALEKLYNLKECCYEPTKWLNEQYKIYRKSKHFTKPSICLNDGVVNV 539
             V P+ + I+ IEHALEKLY L+ECCYEP +WL+EQY+ Y   +    P+I L+ G+V V
Sbjct: 297  WVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYISKQVAGSPAISLDTGLVYV 356

Query: 538  RRVEITPSRIYFCGPEVIVSNRVLRKYHELIDNFIRVSFLDEDGKKMWSTDLSPRTVPNE 359
            RRV+ITP ++YFCGPEV VSNRVLR Y E IDNF+RVSFLDE+ +K+ ST +SPR + NE
Sbjct: 357  RRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPR-MSNE 415

Query: 358  IKRHTDIYRRILSTLNNGIVIGDKKFEFLAYSSSQLRDNSVWMFAPGNGVTAARIREWMG 179
              R T +YRRILS L NGIVIGDKKF+FLA SSSQLRDNS WMFA   G+TAA IR  MG
Sbjct: 416  -GRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMG 474

Query: 178  NFREIRNVAKYASRLGQSFSSSRETLTVNREEFEIIPDVEIKTNGVEYVFSDGIGRI 8
            +F +IRNVAKYA+RLGQSFSSS+ETL V + E EIIPD+E   +G  YVFSDGIG+I
Sbjct: 475  DFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKI 531