BLASTX nr result
ID: Cimicifuga21_contig00004276
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00004276
(390 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containi... 202 2e-50
ref|XP_002318172.1| predicted protein [Populus trichocarpa] gi|2... 194 8e-48
ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containi... 183 1e-44
ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containi... 183 1e-44
ref|XP_002532091.1| pentatricopeptide repeat-containing protein,... 181 7e-44
>ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera] gi|296090299|emb|CBI40118.3| unnamed
protein product [Vitis vinifera]
Length = 618
Score = 202 bits (515), Expect = 2e-50
Identities = 96/130 (73%), Positives = 113/130 (86%)
Frame = +1
Query: 1 VGLFRRMRIAGFQPDEMTLVSVLGACGDLGDLIMGKWVEGFVEENDVKLNSFLGSALIDM 180
VGLF MR AGF+PDEMTLVS+LGACGDLGDL +G W+EGFV EN++ LNSF+GSALI M
Sbjct: 212 VGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGM 271
Query: 181 YGKCGDLESARRIFERLPIKDLVVWNAMITGYSQNGASNNAITLFHDMREAGVDPDKITL 360
YGKCGDL SARR+F+R+ KD+V WNAMITGY+QNG S+ AI LF MRE+GV+PDKITL
Sbjct: 272 YGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITL 331
Query: 361 IGVLSSCASI 390
+GVLS+CASI
Sbjct: 332 VGVLSACASI 341
Score = 113 bits (282), Expect = 2e-23
Identities = 56/127 (44%), Positives = 83/127 (65%), Gaps = 2/127 (1%)
Frame = +1
Query: 7 LFRRMRIAGFQPDEMTLVSVLGACGDLGDLIMGKWVEGFVEENDVKLNSFLGSALIDMYG 186
LF MR +G PD++TLV VL AC +G L GKW++ + E ++ + ++ +ALIDMY
Sbjct: 315 LFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYA 374
Query: 187 KCGDLESARRIFERLPIKDLVVWNAMITGYSQNGASNNAITLFHDMREAG--VDPDKITL 360
KCG L+ A R+FE +P K+ V WNAMI+ + +G +++LF M + G V P+ I+
Sbjct: 375 KCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISF 434
Query: 361 IGVLSSC 381
IGVLS+C
Sbjct: 435 IGVLSAC 441
Score = 98.2 bits (243), Expect = 6e-19
Identities = 47/130 (36%), Positives = 81/130 (62%)
Frame = +1
Query: 1 VGLFRRMRIAGFQPDEMTLVSVLGACGDLGDLIMGKWVEGFVEENDVKLNSFLGSALIDM 180
+ + +M+ G +P+ T V AC +L L G+ V ++ + + + +LI M
Sbjct: 111 IEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITM 170
Query: 181 YGKCGDLESARRIFERLPIKDLVVWNAMITGYSQNGASNNAITLFHDMREAGVDPDKITL 360
Y +CG+L ARR+F+ + KDLV WN+MI+GYS+ G + +A+ LF +MR+AG +PD++TL
Sbjct: 171 YSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTL 230
Query: 361 IGVLSSCASI 390
+ +L +C +
Sbjct: 231 VSILGACGDL 240
>ref|XP_002318172.1| predicted protein [Populus trichocarpa] gi|222858845|gb|EEE96392.1|
predicted protein [Populus trichocarpa]
Length = 617
Score = 194 bits (492), Expect = 8e-48
Identities = 90/130 (69%), Positives = 112/130 (86%)
Frame = +1
Query: 1 VGLFRRMRIAGFQPDEMTLVSVLGACGDLGDLIMGKWVEGFVEENDVKLNSFLGSALIDM 180
+GLF MR GF+PDEMTLVSVLGACGDLGDL +G+WVEGFV E +++NS++GSALIDM
Sbjct: 214 IGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDM 273
Query: 181 YGKCGDLESARRIFERLPIKDLVVWNAMITGYSQNGASNNAITLFHDMREAGVDPDKITL 360
YGKCGDL SARR+F+ +P KD+V WNA+ITGY+QNGASN AI LF+ MREAG PD++T+
Sbjct: 274 YGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTM 333
Query: 361 IGVLSSCASI 390
I VLS+C++I
Sbjct: 334 IEVLSACSTI 343
Score = 116 bits (290), Expect = 2e-24
Identities = 59/127 (46%), Positives = 82/127 (64%), Gaps = 2/127 (1%)
Frame = +1
Query: 7 LFRRMRIAGFQPDEMTLVSVLGACGDLGDLIMGKWVEGFVEENDVKLNSFLGSALIDMYG 186
LF MR AG PD +T++ VL AC +G L +GKWVE E ++ + ++ SALIDMY
Sbjct: 317 LFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYA 376
Query: 187 KCGDLESARRIFERLPIKDLVVWNAMITGYSQNGASNNAITLFHDMRE--AGVDPDKITL 360
KCG L+ A R+FE +P K+ V WNAMI+ + +G + A++LF M + V P+ IT
Sbjct: 377 KCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITF 436
Query: 361 IGVLSSC 381
IGVLS+C
Sbjct: 437 IGVLSAC 443
Score = 97.4 bits (241), Expect = 1e-18
Identities = 46/130 (35%), Positives = 81/130 (62%)
Frame = +1
Query: 1 VGLFRRMRIAGFQPDEMTLVSVLGACGDLGDLIMGKWVEGFVEENDVKLNSFLGSALIDM 180
V L+ +++ G + + T + ACG++ L+ GK V + + + ++ +LI M
Sbjct: 113 VELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITM 172
Query: 181 YGKCGDLESARRIFERLPIKDLVVWNAMITGYSQNGASNNAITLFHDMREAGVDPDKITL 360
Y +CG++ AR++F+ + +DLV WN+MI+GYS+ G + AI LF +MRE G +PD++TL
Sbjct: 173 YARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTL 232
Query: 361 IGVLSSCASI 390
+ VL +C +
Sbjct: 233 VSVLGACGDL 242
>ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 183 bits (465), Expect = 1e-44
Identities = 91/130 (70%), Positives = 104/130 (80%)
Frame = +1
Query: 1 VGLFRRMRIAGFQPDEMTLVSVLGACGDLGDLIMGKWVEGFVEENDVKLNSFLGSALIDM 180
VGLFR M AGFQP+EM+LVSVLGACG+LGDL +G WVE FV EN + LN F+GSALI M
Sbjct: 213 VGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHM 272
Query: 181 YGKCGDLESARRIFERLPIKDLVVWNAMITGYSQNGASNNAITLFHDMREAGVDPDKITL 360
YGKCGDL SARRIF+ + KD V WNAMITGY+QNG S AI LF DMR + PD+ITL
Sbjct: 273 YGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITL 332
Query: 361 IGVLSSCASI 390
IG+LS+CASI
Sbjct: 333 IGILSACASI 342
Score = 111 bits (278), Expect = 5e-23
Identities = 54/129 (41%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Frame = +1
Query: 1 VGLFRRMRIAGFQPDEMTLVSVLGACGDLGDLIMGKWVEGFVEENDVKLNSFLGSALIDM 180
+ LF+ MR++ PD++TL+ +L AC +G L +GK VE + E + + ++G+AL+DM
Sbjct: 314 IKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDM 373
Query: 181 YGKCGDLESARRIFERLPIKDLVVWNAMITGYSQNGASNNAITLFHDMREAG--VDPDKI 354
Y KCG L++A R+F +P K+ V WNAMI+ + +G + A+ LF M G V P+ I
Sbjct: 374 YAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDI 433
Query: 355 TLIGVLSSC 381
T +GVLS+C
Sbjct: 434 TFVGVLSAC 442
Score = 88.6 bits (218), Expect = 5e-16
Identities = 42/127 (33%), Positives = 74/127 (58%)
Frame = +1
Query: 10 FRRMRIAGFQPDEMTLVSVLGACGDLGDLIMGKWVEGFVEENDVKLNSFLGSALIDMYGK 189
+ RM+ G +P+ +T + AC +L + G+ V + + + +LI MY +
Sbjct: 115 YSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYAR 174
Query: 190 CGDLESARRIFERLPIKDLVVWNAMITGYSQNGASNNAITLFHDMREAGVDPDKITLIGV 369
CG + AR++F+ + KDLV WN+MI+GYS+ + A+ LF +M EAG P++++L+ V
Sbjct: 175 CGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSV 234
Query: 370 LSSCASI 390
L +C +
Sbjct: 235 LGACGEL 241
>ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 183 bits (465), Expect = 1e-44
Identities = 91/130 (70%), Positives = 104/130 (80%)
Frame = +1
Query: 1 VGLFRRMRIAGFQPDEMTLVSVLGACGDLGDLIMGKWVEGFVEENDVKLNSFLGSALIDM 180
VGLFR M AGFQP+EM+LVSVLGACG+LGDL +G WVE FV EN + LN F+GSALI M
Sbjct: 213 VGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHM 272
Query: 181 YGKCGDLESARRIFERLPIKDLVVWNAMITGYSQNGASNNAITLFHDMREAGVDPDKITL 360
YGKCGDL SARRIF+ + KD V WNAMITGY+QNG S AI LF DMR + PD+ITL
Sbjct: 273 YGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITL 332
Query: 361 IGVLSSCASI 390
IG+LS+CASI
Sbjct: 333 IGILSACASI 342
Score = 111 bits (278), Expect = 5e-23
Identities = 54/129 (41%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Frame = +1
Query: 1 VGLFRRMRIAGFQPDEMTLVSVLGACGDLGDLIMGKWVEGFVEENDVKLNSFLGSALIDM 180
+ LF+ MR++ PD++TL+ +L AC +G L +GK VE + E + + ++G+AL+DM
Sbjct: 314 IKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDM 373
Query: 181 YGKCGDLESARRIFERLPIKDLVVWNAMITGYSQNGASNNAITLFHDMREAG--VDPDKI 354
Y KCG L++A R+F +P K+ V WNAMI+ + +G + A+ LF M G V P+ I
Sbjct: 374 YAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDI 433
Query: 355 TLIGVLSSC 381
T +GVLS+C
Sbjct: 434 TFVGVLSAC 442
Score = 88.6 bits (218), Expect = 5e-16
Identities = 42/127 (33%), Positives = 74/127 (58%)
Frame = +1
Query: 10 FRRMRIAGFQPDEMTLVSVLGACGDLGDLIMGKWVEGFVEENDVKLNSFLGSALIDMYGK 189
+ RM+ G +P+ +T + AC +L + G+ V + + + +LI MY +
Sbjct: 115 YSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYAR 174
Query: 190 CGDLESARRIFERLPIKDLVVWNAMITGYSQNGASNNAITLFHDMREAGVDPDKITLIGV 369
CG + AR++F+ + KDLV WN+MI+GYS+ + A+ LF +M EAG P++++L+ V
Sbjct: 175 CGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSV 234
Query: 370 LSSCASI 390
L +C +
Sbjct: 235 LGACGEL 241
>ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528238|gb|EEF30293.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 446
Score = 181 bits (458), Expect = 7e-44
Identities = 85/130 (65%), Positives = 107/130 (82%)
Frame = +1
Query: 1 VGLFRRMRIAGFQPDEMTLVSVLGACGDLGDLIMGKWVEGFVEENDVKLNSFLGSALIDM 180
V LF MR GF+P EMTLVS+LGACGDLGDL +GKWVE + + ++LNS+ SALIDM
Sbjct: 213 VRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKKMELNSYTASALIDM 272
Query: 181 YGKCGDLESARRIFERLPIKDLVVWNAMITGYSQNGASNNAITLFHDMREAGVDPDKITL 360
YGKCGDL SARR+F+ + KD+V WNAMITGY+QNGAS+ A+TLF+ MREAG+ P++IT+
Sbjct: 273 YGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMTLFNVMREAGITPNEITM 332
Query: 361 IGVLSSCASI 390
+ VLS+CASI
Sbjct: 333 VVVLSACASI 342
Score = 114 bits (285), Expect = 8e-24
Identities = 56/126 (44%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
Frame = +1
Query: 7 LFRRMRIAGFQPDEMTLVSVLGACGDLGDLIMGKWVEGFVEENDVKLNSFLGSALIDMYG 186
LF MR AG P+E+T+V VL AC +G L +GKWVE + + ++ + ++ SAL+DMY
Sbjct: 316 LFNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVASALVDMYA 375
Query: 187 KCGDLESARRIFERLPIKDLVVWNAMITGYSQNGASNNAITLFHDMREAG-VDPDKITLI 363
KCG L++A R+FE +P K+ V WNAMI+ + +G + A++LF M V P+ IT I
Sbjct: 376 KCGSLDNALRVFENMPHKNEVSWNAMISALAFHGRAREALSLFSRMLNGSTVRPNDITFI 435
Query: 364 GVLSSC 381
GV ++C
Sbjct: 436 GVFAAC 441
Score = 93.6 bits (231), Expect = 1e-17
Identities = 43/130 (33%), Positives = 78/130 (60%)
Frame = +1
Query: 1 VGLFRRMRIAGFQPDEMTLVSVLGACGDLGDLIMGKWVEGFVEENDVKLNSFLGSALIDM 180
+ L+ +M+ G +P+ T + +C +L L G+ V + +S + +LI M
Sbjct: 112 IQLYYQMKSLGLKPNNFTFPFLFISCANLVALHCGQIAHSLVLKMGFNNDSHINHSLITM 171
Query: 181 YGKCGDLESARRIFERLPIKDLVVWNAMITGYSQNGASNNAITLFHDMREAGVDPDKITL 360
Y KC L+SAR++F+ + +D+V WN+MI+GY++ G + A+ LF +MRE G +P ++TL
Sbjct: 172 YAKCSKLDSARKVFDEILERDIVSWNSMISGYTKMGFAREAVRLFMEMREQGFEPVEMTL 231
Query: 361 IGVLSSCASI 390
+ +L +C +
Sbjct: 232 VSILGACGDL 241