BLASTX nr result
ID: Cimicifuga21_contig00004213
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00004213
(6563 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232... 737 0.0
gb|AEV43360.1| RNA recognition motif protein 1 [Citrus sinensis] 692 0.0
ref|XP_002526479.1| RNA binding protein, putative [Ricinus commu... 689 0.0
ref|XP_003520415.1| PREDICTED: uncharacterized protein LOC100779... 665 0.0
ref|XP_003636168.1| Heterogeneous nuclear ribonucleoprotein Q [M... 655 0.0
>ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232913 [Vitis vinifera]
gi|297734640|emb|CBI16691.3| unnamed protein product
[Vitis vinifera]
Length = 812
Score = 737 bits (1903), Expect = 0.0
Identities = 383/558 (68%), Positives = 429/558 (76%), Gaps = 4/558 (0%)
Frame = +2
Query: 968 GGLDKDASEEDLKKVFGSVGEIVEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVKEMKNP 1147
GGLDKDA+E+DL+KVF VGE+ EVRLMMNPQTKKNKGFAFLRFATVE+AKRAV E+KNP
Sbjct: 237 GGLDKDATEDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTELKNP 296
Query: 1148 VVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKQYGVDSVEDLTLVEDSNNEGMNR 1327
VVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLK YGV++VEDLTLVEDSNNEGMNR
Sbjct: 297 VVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNEGMNR 356
Query: 1328 GFAFLEFSSRSDATEAHKRLQKRDVVFGVDRNAKVAFADSFIEPDDEIMAQVKTVFVDGL 1507
GFAFLEFSSRSDA +A KRLQKRDVVFGVDR AKV+FADSFI+P DEIMAQVKTVF+DGL
Sbjct: 357 GFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRTAKVSFADSFIDPGDEIMAQVKTVFIDGL 416
Query: 1508 PASWDEDRVKEQLKKFGQIEKVELARNMPSAKRKDFGFVTFDTHDNAVICAESINNAELG 1687
PASWDEDRV+E LKK+G+IEK+ELARNMPSAKRKDFGFVTFDTHD AV CA+SINNAELG
Sbjct: 417 PASWDEDRVRELLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 476
Query: 1688 DEDNKVKVRARLSRPLQRGRGKHVSRGDFRSGRGAP-RGGRVSWVRPAPRSFP--PPRGL 1858
+ +NK KVRARLSRPLQRG+GKH+SRGDFR GRG P RG R SW RPA RSFP RGL
Sbjct: 477 EGENKAKVRARLSRPLQRGKGKHISRGDFRPGRGGPVRGVRGSWARPALRSFPGRGARGL 536
Query: 1859 XXXXXXXXXXXXXXFKGPIGFRERRPVMAMPEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2038
K PIGFR+RRPVMAMP
Sbjct: 537 ------GPRLPPAAVKRPIGFRDRRPVMAMPPRGRPLPPPSRSYDRRAPVPAYPKPNLKR 590
Query: 2039 DFVRRDELPPRSRVAVDYGSRAAPERRSSYKVDYAPRGSSYSDDVARGSTRAAPRRAAYA 2218
D+ RR+E+P RSR AVDYGSR APERR SY+ DYA RGS YS D+ R ++R A RR Y
Sbjct: 591 DYGRREEVPLRSRPAVDYGSRVAPERRPSYRDDYATRGSGYS-DIPRNTSRTAARR-TYE 648
Query: 2219 DETYERRFER-PPPSYREGRARDYDSISGSKRSYSALEDVPPRYAEAGVRPSRARLDYGV 2395
D+ Y +RFER PPPSYREGR RDYDSI+GSKR Y AL+DVPPRYA+A VR SRARLDY +
Sbjct: 649 DDAYGQRFERPPPPSYREGRPRDYDSIAGSKRPYGALDDVPPRYADASVRQSRARLDYEM 708
Query: 2396 GGSSSQYADTYSDRVGRSQVGYAGSRSSLSAQEAHGAYSSRQXXXXXXXXXXXXXXXXXX 2575
+SQY D Y DR+GRS +GY GSRSS+S+Q++HG YSSRQ
Sbjct: 709 SAGASQYGDAYGDRLGRSNLGYGGSRSSMSSQDSHGLYSSRQGMGYGGGSFGGSDVGGMY 768
Query: 2576 XXXXXNDYVPRGPDMGNN 2629
+DY+PRG D+G +
Sbjct: 769 SSSYGSDYMPRGADVGGS 786
>gb|AEV43360.1| RNA recognition motif protein 1 [Citrus sinensis]
Length = 775
Score = 692 bits (1787), Expect = 0.0
Identities = 361/558 (64%), Positives = 416/558 (74%), Gaps = 4/558 (0%)
Frame = +2
Query: 968 GGLDKDASEEDLKKVFGSVGEIVEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVKEMKNP 1147
GGLDKD +DL+KVF VGE+ EVRLMMNPQTKKNKGFAFLRFATVE+A++AV E+KNP
Sbjct: 202 GGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP 261
Query: 1148 VVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKQYGVDSVEDLTLVEDSNNEGMNR 1327
V+NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLK YGVD+VEDLTLVEDSNNEGMNR
Sbjct: 262 VINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321
Query: 1328 GFAFLEFSSRSDATEAHKRLQKRDVVFGVDRNAKVAFADSFIEPDDEIMAQVKTVFVDGL 1507
GFAFLEFSSRSDA +A KRLQKRDV+FGVDR AKV+FADSFI+P DEIMAQVKTVFVDGL
Sbjct: 322 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGL 381
Query: 1508 PASWDEDRVKEQLKKFGQIEKVELARNMPSAKRKDFGFVTFDTHDNAVICAESINNAELG 1687
PASWDEDRV+E LK +G+I K+ELARNMPSAKRKDFGFVTFDTHD AV CA+SINNAELG
Sbjct: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
Query: 1688 DEDNKVKVRARLSRPLQRGRGKHVSRGDFRSGRGAPRGGRVSWVRPAPRSFP--PPRGLX 1861
+ DNK KVRARLSRPLQRG+GKH SRGDFRSGRG R R SW P+PRS P RG+
Sbjct: 442 EGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGI- 500
Query: 1862 XXXXXXXXXXXXXFKGPIGFRERRPVMAM-PEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2038
K P+ R+RRP+M+M
Sbjct: 501 -----GSRLPPASVKRPVPVRDRRPIMSMTARARPMPPPPPRSYDRRAPVPSYPKPGLKR 555
Query: 2039 DFVRRDEL-PPRSRVAVDYGSRAAPERRSSYKVDYAPRGSSYSDDVARGSTRAAPRRAAY 2215
++ RRDE+ PPRSR VDYGSR P+RR Y+ +Y RGS Y D+ R ++R A RR Y
Sbjct: 556 EYGRRDEVPPPRSRAPVDYGSRVVPDRR-PYRDEYTSRGSGY-PDMPRSTSRGAARR-PY 612
Query: 2216 ADETYERRFERPPPSYREGRARDYDSISGSKRSYSALEDVPPRYAEAGVRPSRARLDYGV 2395
D+ Y +RFERPPPSYREGRARDY+++SGSKR YS ++DVPPRYA+ GVR SRARLDY +
Sbjct: 613 VDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRHSRARLDYDL 672
Query: 2396 GGSSSQYADTYSDRVGRSQVGYAGSRSSLSAQEAHGAYSSRQXXXXXXXXXXXXXXXXXX 2575
GG + QY D Y DR+GRS +GY GSRSS+S+Q++HG YSSRQ
Sbjct: 673 GGGAPQYGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSSRQ-GMGYGGSYSGGDVGGMY 731
Query: 2576 XXXXXNDYVPRGPDMGNN 2629
+DY+PRG D+G +
Sbjct: 732 SSSYGSDYMPRGSDVGGS 749
>ref|XP_002526479.1| RNA binding protein, putative [Ricinus communis]
gi|223534154|gb|EEF35870.1| RNA binding protein, putative
[Ricinus communis]
Length = 784
Score = 689 bits (1779), Expect = 0.0
Identities = 367/557 (65%), Positives = 419/557 (75%), Gaps = 4/557 (0%)
Frame = +2
Query: 968 GGLDKDASEEDLKKVFGSVGEIVEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVKEMKNP 1147
GGLDKDA+E+DL+KVF VGE+ EVRLMMNPQTKKNKGFAFLRF+TVE+AK+AV E+KNP
Sbjct: 218 GGLDKDATEDDLRKVFTRVGEVTEVRLMMNPQTKKNKGFAFLRFSTVEQAKKAVTELKNP 277
Query: 1148 VVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKQYGVDSVEDLTLVEDSNNEGMNR 1327
V+NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLK YGV++VED+TLVEDSNNEGMNR
Sbjct: 278 VINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDVTLVEDSNNEGMNR 337
Query: 1328 GFAFLEFSSRSDATEAHKRLQKRDVVFGVDRNAKVAFADSFIEPDDEIMAQVKTVFVDGL 1507
GFAFLEFSSRSDA +A KRLQKRDV+FGVDR AKV+FADSFI+P DEIMAQVKTVFVDGL
Sbjct: 338 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGL 397
Query: 1508 PASWDEDRVKEQLKKFGQIEKVELARNMPSAKRKDFGFVTFDTHDNAVICAESINNAELG 1687
PASWDEDRV+E LKKFG+IEK+ELARNMPSAKRKDFGFVTFD+HD AV CA+SINNAELG
Sbjct: 398 PASWDEDRVRELLKKFGEIEKIELARNMPSAKRKDFGFVTFDSHDAAVTCAKSINNAELG 457
Query: 1688 DEDNKVKVRARLSRPLQRGRGKHVSRGDFRSGRGAPRGGRVSWVRPAPRSFPPPRGLXXX 1867
+ DNK KVRARLSRPLQRG+GKH SR DFRS G R R WVRP RG+
Sbjct: 458 EGDNKAKVRARLSRPLQRGKGKHASRADFRSWYGG-RTARGPWVRPV-------RGI--- 506
Query: 1868 XXXXXXXXXXXFKGPIGFRERR-PVMAMPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXDF 2044
K +G R+RR PVM+MP D+
Sbjct: 507 ---ASRAAPTSVKRHVGLRDRRPPVMSMPVRGRPLPPPNRTYDRRAPAPSYPKSSLKRDY 563
Query: 2045 VRRDEL-PPRSRVAVDYGSRAAPERRSSYKVDYAPRGSSYSDDVARGSTRAAPRRAAYAD 2221
RR+EL PPRSR VDY SR+ ERR SY+ DY+ RGS YS D+ RG++R++ RR AY D
Sbjct: 564 GRREELPPPRSRAPVDYSSRSVAERRQSYRDDYSSRGSGYS-DIPRGTSRSSARR-AYVD 621
Query: 2222 ETYERRFERPPPSYREGRARDYDSISGSKRSYSALEDVPPRYAE--AGVRPSRARLDYGV 2395
+ Y +R ER PPSYREGRARDYDSISGSKR YSA++DVPPRYA+ AG R SRARLDY +
Sbjct: 622 DGYGQRLERHPPSYREGRARDYDSISGSKRPYSAMDDVPPRYADGGAGTRHSRARLDYEL 681
Query: 2396 GGSSSQYADTYSDRVGRSQVGYAGSRSSLSAQEAHGAYSSRQXXXXXXXXXXXXXXXXXX 2575
G S+SQY D Y DR+GRS VGY GSRSSLS+Q++HG Y+SRQ
Sbjct: 682 GPSASQYGDAYGDRIGRSSVGYGGSRSSLSSQDSHGLYTSRQ-GMGYGGSYGANDVGGMY 740
Query: 2576 XXXXXNDYVPRGPDMGN 2626
DY+PRG D+G+
Sbjct: 741 QSSYGGDYMPRGSDVGS 757
>ref|XP_003520415.1| PREDICTED: uncharacterized protein LOC100779340 [Glycine max]
Length = 816
Score = 665 bits (1717), Expect = 0.0
Identities = 346/565 (61%), Positives = 413/565 (73%), Gaps = 11/565 (1%)
Frame = +2
Query: 968 GGLDKDASEEDLKKVFGSVGEIVEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVKEMKNP 1147
GGLDKDA+E DL+K FG VG + EVRLMMNPQTKKNKGFAFLRF TVE+AKRAV E+KNP
Sbjct: 237 GGLDKDATESDLRKAFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELKNP 296
Query: 1148 VVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKQYGVDSVEDLTLVEDSNNEGMNR 1327
V+NGKQCGVTPSQDSDTL+LGNICKTWTKEALKEKLK YGV +VEDLTLVED+N+EG NR
Sbjct: 297 VINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNR 356
Query: 1328 GFAFLEFSSRSDATEAHKRLQKRDVVFGVDRNAKVAFADSFIEPDDEIMAQVKTVFVDGL 1507
GFAFLEF SRS+A +A KRLQ+RDVVFGVD+ AKV+FADSFI+P DEIMAQVKTVF+D L
Sbjct: 357 GFAFLEFPSRSEAMDAFKRLQRRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDAL 416
Query: 1508 PASWDEDRVKEQLKKFGQIEKVELARNMPSAKRKDFGFVTFDTHDNAVICAESINNAELG 1687
P SWDED V++ L+K+G+IEK+ELARNMP+A+RKD+GFVTF +HD AV CA+SI ELG
Sbjct: 417 PPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGSHDAAVKCADSITGTELG 476
Query: 1688 DEDNKVKVRARLSRPLQRGRGKHVSRGDFRSGRGAPRGGRVSWVRPAPRSFP--PPRGLX 1861
+ D K KVRARLSRPLQRGRGKH+SRGD+RS RG+ R SW RPAPRSFP RG+
Sbjct: 477 EGDKKAKVRARLSRPLQRGRGKHISRGDYRSSRGSGMMTRPSWSRPAPRSFPSRSVRGVG 536
Query: 1862 XXXXXXXXXXXXXFKGPIGFRERRPVMAMPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXD 2041
P+ R+RRP+M++P D
Sbjct: 537 SRAPPVR---------PVSVRDRRPMMSIPARSRPVPPPSRSYDRRPVAPAYPKSSMKRD 587
Query: 2042 FVRRDEL-PPRSRVAVDYGSRAAPERRSSYKVDYAPRGSSYSDDVARGSTRAAPRRAAYA 2218
+ RR+++ PPRSRVAVDYGSR A ERR+SY+ DY RG Y+ ++ R ++RAAPRR Y
Sbjct: 588 YGRREDIPPPRSRVAVDYGSRVASERRTSYR-DYPARGPGYT-ELPRSTSRAAPRR-GYV 644
Query: 2219 DETYERRFERPPP-------SYREGRARDYDSISGSKRSYSALEDVPPRYAEAGVRPSRA 2377
D+ Y +RFER PP SYREGR RDYD++SGSKRSY+A++DVPPRYA+ G R SRA
Sbjct: 645 DDGYGQRFERAPPPPPPPHLSYREGRPRDYDALSGSKRSYAAIDDVPPRYADTGARQSRA 704
Query: 2378 RLDYGVGGSSSQYADTYSDRVGRSQVGY-AGSRSSLSAQEAHGAYSSRQXXXXXXXXXXX 2554
RLDY GGS+SQY D Y DR+GRS +GY GSRSS+S+Q++HG YSSRQ
Sbjct: 705 RLDYDYGGSASQYGDAYGDRLGRSSMGYGGGSRSSISSQDSHGLYSSRQGMSYGGGSFGS 764
Query: 2555 XXXXXXXXXXXXNDYVPRGPDMGNN 2629
DY+ RG D+G +
Sbjct: 765 GDVGGMYSSSYGGDYISRGSDVGGS 789
>ref|XP_003636168.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355502103|gb|AES83306.1| Heterogeneous nuclear
ribonucleoprotein Q [Medicago truncatula]
Length = 824
Score = 655 bits (1689), Expect = 0.0
Identities = 342/528 (64%), Positives = 398/528 (75%), Gaps = 10/528 (1%)
Frame = +2
Query: 968 GGLDKDASEEDLKKVFGSVGEIVEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVKEMKNP 1147
GGLDKDA+E+DL+KVF VG + EVRLMMNPQTKKNKGFAFLRF VE+AKRAV E+KNP
Sbjct: 220 GGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNP 279
Query: 1148 VVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKQYGVDSVEDLTLVEDSNNEGMNR 1327
V+NGKQCGVTPSQDSDTL+LGNICKTWTKEALKEKLK YGV +VED+TLVEDSN++G NR
Sbjct: 280 VINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNR 339
Query: 1328 GFAFLEFSSRSDATEAHKRLQKRDVVFGVDRNAKVAFADSFIEPDDEIMAQVKTVFVDGL 1507
GFAFLEFSSRSDA +A KRLQKRDV FGVD+ AKV+FADSFI+P DEIM+QVKTVF+D L
Sbjct: 340 GFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDAL 399
Query: 1508 PASWDEDRVKEQLKKFGQIEKVELARNMPSAKRKDFGFVTFDTHDNAVICAESINNAELG 1687
P SWDED V+ LKK+G++EK+ELARNMP+A+RKD+GFVTF +HD A+ CA+SI ELG
Sbjct: 400 PPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCADSITGTELG 459
Query: 1688 DEDNKVKVRARLSRPLQRGRGKHVSRGDFRSGRGAPRGGRVSW-VRPAPRSFPPPRGLXX 1864
+ D K KVRARLSRPLQRGRGKHV RGD+R RG+ R SW RPAPRSF RG+
Sbjct: 460 EGDKKAKVRARLSRPLQRGRGKHVGRGDYRPSRGSAIMSRPSWSSRPAPRSF-SSRGVRG 518
Query: 1865 XXXXXXXXXXXXFKGPIGFRERRPVMAMPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXDF 2044
I R+RRPVM++P D+
Sbjct: 519 IGSRAPPIR------SISARDRRPVMSIPVRSRPLPPPARSYDRRPADAAYSKSSVKRDY 572
Query: 2045 VRRDEL-PPRSRVAVDYGSRAAPERRSSYKVDYAPRGSSYSDDVARGSTRAAPRRAAYAD 2221
RRD+L PPRSRVAVDYGSR ERR +Y+ DY PRGS YSD R + RAAPRR Y D
Sbjct: 573 GRRDDLPPPRSRVAVDYGSRMTSERRPTYR-DYPPRGSDYSDP-PRSTARAAPRR-GYVD 629
Query: 2222 ETYERRFERPP-------PSYREGRARDYDSISGSKRSYSALEDVPPRYAEAGVRPSRAR 2380
+ Y +R+ERPP PSYREGR RDYDS+SGSKRSY+A++DVPPRYA+ G R SRAR
Sbjct: 630 DGYSQRYERPPPPPPPSHPSYREGRPRDYDSLSGSKRSYAAVDDVPPRYADTGARQSRAR 689
Query: 2381 LDYGVGGSSSQYADTYSDRVGRSQVGY-AGSRSSLSAQEAHGAYSSRQ 2521
L+Y GGS+SQY D Y DRVGRS +GY +GSRSS+S Q++HG YSSRQ
Sbjct: 690 LEYDYGGSASQYGDAYGDRVGRSSLGYGSGSRSSISGQDSHGVYSSRQ 737