BLASTX nr result
ID: Cimicifuga21_contig00004114
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00004114
(1786 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI39598.3| unnamed protein product [Vitis vinifera] 431 e-118
ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated prot... 431 e-118
ref|XP_002330255.1| predicted protein [Populus trichocarpa] gi|2... 431 e-118
ref|XP_002318949.1| predicted protein [Populus trichocarpa] gi|2... 396 e-108
ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated prot... 391 e-106
>emb|CBI39598.3| unnamed protein product [Vitis vinifera]
Length = 1097
Score = 431 bits (1109), Expect = e-118
Identities = 246/479 (51%), Positives = 309/479 (64%), Gaps = 38/479 (7%)
Frame = +1
Query: 229 KDV*VMARVPNKHNHDPNLDFQGFLNDLQDWXXXXXXXXXXXXAQSHEEKEVGSSFQRAG 408
+ V + R P+KH D LDFQGFL DLQDW AQ+ EEK+V ++ R
Sbjct: 620 RSVSMATRFPSKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQA-EEKDVPTA--RGN 676
Query: 409 VVGGDRISTRKAPLVDF--SENSAQHFDYSKSFNDINRLSSS-LTEESSPNATSEKDLGN 579
V ++S+ + S + + +YS++ + I+R+SSS +TEES P+A SEK+LGN
Sbjct: 677 VKHSSKLSSSPGVSLRLGQSRSDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKELGN 736
Query: 580 EYFKQKKFKEAIDCYSRSIGLSPTAVAFANRAMAYLKIKRFEEAENDCTEALNLDDRYIK 759
EYFKQ+KFKEAIDCYSRSI L PTAVA+ANRAMAY+KIKRF EAE+DC EALNLDDRYIK
Sbjct: 737 EYFKQRKFKEAIDCYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIK 796
Query: 760 AYSRRATARKQLGKLKESIEDSEFALRLDPQNQELKKQNAEAKAMYEKEILEKAAGVMES 939
AYSRRATARK+LGK KE+ ED+EFALRL+PQNQE+KKQ AEAK++YEKEIL+KA+G ++S
Sbjct: 797 AYSRRATARKELGKFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKS 856
Query: 940 STQEVQ------------------------GAG-----------ANENRXXXXXXXXXXX 1014
S Q +Q GAG AN +
Sbjct: 857 SVQGLQKVGKSVVEVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKGTG 916
Query: 1015 XXXXXNGSQEGATLSSGPDGSKIVHGVNKQELRMSVXXXXXXXXXXXXXXXEKHIIPPKS 1194
NG E A +SG + H ++E++ S+ K+I P S
Sbjct: 917 NRSKENGYLENAVQNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAPNS 976
Query: 1195 AYQFEISWKKLSGDRALQARLLKVISPSTLPQLFKSSLSATLLIDIIKCISTFFKEETEL 1374
AYQFE+SW+ L GD ALQA LK ISP+ LPQ+FK++LSA +LIDIIKCI+TFF E +L
Sbjct: 977 AYQFEVSWRGLLGDHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIATFFVTEMDL 1036
Query: 1375 AVKFLESLTLVSRFDMIIMCLFAADKFDLEKMWDEVFLNAAAVPVEYAETLGKLRPKYC 1551
AVKFL++LT +SRFDMIIMCL + DK DL K+WDEVF N A P YA+TLGKLRP+YC
Sbjct: 1037 AVKFLDNLTKISRFDMIIMCLSSTDKTDLLKIWDEVFCN-KATPSGYADTLGKLRPRYC 1094
>ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated protein 3-like [Vitis
vinifera]
Length = 474
Score = 431 bits (1107), Expect = e-118
Identities = 245/472 (51%), Positives = 306/472 (64%), Gaps = 38/472 (8%)
Frame = +1
Query: 250 RVPNKHNHDPNLDFQGFLNDLQDWXXXXXXXXXXXXAQSHEEKEVGSSFQRAGVVGGDRI 429
R P+KH D LDFQGFL DLQDW AQ+ EEK+V ++ R V ++
Sbjct: 4 RFPSKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQA-EEKDVPTA--RGNVKHSSKL 60
Query: 430 STRKAPLVDF--SENSAQHFDYSKSFNDINRLSSS-LTEESSPNATSEKDLGNEYFKQKK 600
S+ + S + + +YS++ + I+R+SSS +TEES P+A SEK+LGNEYFKQ+K
Sbjct: 61 SSSPGVSLRLGQSRSDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKELGNEYFKQRK 120
Query: 601 FKEAIDCYSRSIGLSPTAVAFANRAMAYLKIKRFEEAENDCTEALNLDDRYIKAYSRRAT 780
FKEAIDCYSRSI L PTAVA+ANRAMAY+KIKRF EAE+DC EALNLDDRYIKAYSRRAT
Sbjct: 121 FKEAIDCYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRAT 180
Query: 781 ARKQLGKLKESIEDSEFALRLDPQNQELKKQNAEAKAMYEKEILEKAAGVMESSTQEVQ- 957
ARK+LGK KE+ ED+EFALRL+PQNQE+KKQ AEAK++YEKEIL+KA+G ++SS Q +Q
Sbjct: 181 ARKELGKFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQK 240
Query: 958 -----------------------GAG-----------ANENRXXXXXXXXXXXXXXXXNG 1035
GAG AN + NG
Sbjct: 241 VGKSVVEVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENG 300
Query: 1036 SQEGATLSSGPDGSKIVHGVNKQELRMSVXXXXXXXXXXXXXXXEKHIIPPKSAYQFEIS 1215
E A +SG + H ++E++ S+ K+I P SAYQFE+S
Sbjct: 301 YLENAVQNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVS 360
Query: 1216 WKKLSGDRALQARLLKVISPSTLPQLFKSSLSATLLIDIIKCISTFFKEETELAVKFLES 1395
W+ L GD ALQA LK ISP+ LPQ+FK++LSA +LIDIIKCI+TFF E +LAVKFL++
Sbjct: 361 WRGLLGDHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIATFFVTEMDLAVKFLDN 420
Query: 1396 LTLVSRFDMIIMCLFAADKFDLEKMWDEVFLNAAAVPVEYAETLGKLRPKYC 1551
LT +SRFDMIIMCL + DK DL K+WDEVF N A P YA+TLGKLRP+YC
Sbjct: 421 LTKISRFDMIIMCLSSTDKTDLLKIWDEVFCN-KATPSGYADTLGKLRPRYC 471
>ref|XP_002330255.1| predicted protein [Populus trichocarpa] gi|222871711|gb|EEF08842.1|
predicted protein [Populus trichocarpa]
Length = 434
Score = 431 bits (1107), Expect = e-118
Identities = 242/449 (53%), Positives = 299/449 (66%), Gaps = 13/449 (2%)
Frame = +1
Query: 244 MARVPNKHNHDPNLDFQGFLNDLQDWXXXXXXXXXXXXAQSHEEKEVGSSFQRAGV-VGG 420
MARVP KH D LDFQGFLNDLQDW +K++ + + V +G
Sbjct: 1 MARVPGKHGRDQALDFQGFLNDLQDWELL-----------KDTDKKMKKKSRASDVKIGE 49
Query: 421 DRISTRKAPLVDFSENSAQHFDYSKSFNDINRLSSSLT-EESSPNATSEKDLGNEYFKQK 597
D S K D S + + ++YS++F INRLSSS T +E + +AT+EK+LGNEYFKQK
Sbjct: 50 DGRSKGKTSAADSSRSGSGQYEYSRNFGAINRLSSSFTTDEITVDATTEKELGNEYFKQK 109
Query: 598 KFKEAIDCYSRSIGLSPTAVAFANRAMAYLKIKR----FEEAENDCTEALNLDDRYIKAY 765
KF EAI+CYSRSI LSPTAVA+ANRAMAYLKIKR F EAE+DCTEALNLDDRYIKAY
Sbjct: 110 KFNEAIECYSRSIALSPTAVAYANRAMAYLKIKRQFFLFREAEDDCTEALNLDDRYIKAY 169
Query: 766 SRRATARKQLGKLKESIEDSEFALRLDPQNQELKKQNAEAKAMYEK-------EILEKAA 924
SRRATARK+LGKLKESIEDSEFAL+L+P NQE+KKQ AE K++YEK EIL+KA+
Sbjct: 170 SRRATARKELGKLKESIEDSEFALKLEPNNQEIKKQYAEVKSLYEKASDYLMLEILQKAS 229
Query: 925 GVMESSTQEVQGAGANENRXXXXXXXXXXXXXXXXNGSQEGATLSSGPDGSKIVHGVNKQ 1104
G + SS Q Q G +E +Q+ +S D +K + +Q
Sbjct: 230 GTLRSSLQGTQQGGRSEASVNGHAVHPVSI------ATQKTGVSASKKDNTKKNNRTRRQ 283
Query: 1105 ELRMSVXXXXXXXXXXXXXXXEKHIIPPKSAYQFEISWKKLSGDRALQARLLKVISPSTL 1284
EL+ SV K+I PP SAYQFE+SW+ SGDRALQA LLKV SPS L
Sbjct: 284 ELKTSVIELASQAASRAMAEAAKNITPPNSAYQFEVSWQGFSGDRALQAHLLKVTSPSAL 343
Query: 1285 PQLFKSSLSATLLIDIIKCISTFFKEETELAVKFLESLTLVSRFDMIIMCLFAADKFDLE 1464
PQ+FK++LS +LIDIIKC+++FF ++ + AVK+LE+LT V RFDM+IMCL + D DL
Sbjct: 344 PQIFKNALSVPILIDIIKCVASFFIDDMDFAVKYLENLTKVPRFDMLIMCLSSTDTSDLL 403
Query: 1465 KMWDEVFLNAAAVPVEYAETLGKLRPKYC 1551
KMWD VF +A+ P+EYAE L LR KYC
Sbjct: 404 KMWDGVFC-SASTPIEYAEILDNLRSKYC 431
>ref|XP_002318949.1| predicted protein [Populus trichocarpa] gi|222857325|gb|EEE94872.1|
predicted protein [Populus trichocarpa]
Length = 471
Score = 396 bits (1018), Expect = e-108
Identities = 234/496 (47%), Positives = 293/496 (59%), Gaps = 60/496 (12%)
Frame = +1
Query: 244 MARVPNKHNHDPNLDFQGFLNDLQDWXXXXXXXXXXXXAQSHEEKEVGSSFQRAGVVGGD 423
MAR P KH D LDFQGFLNDLQDW K+ ++
Sbjct: 1 MARAPGKHGRDQALDFQGFLNDLQDWELL---------------KDTDKKMKKK------ 39
Query: 424 RISTRKAPLVDFSENSAQHFDYSKSFNDINRLSSSLT-EESSPNATSEKDLGNEYFKQKK 600
ST K VDFS +S +D++++F+ INRLS+S +ES+ +AT+EK+LGNEYFKQKK
Sbjct: 40 --STGKTSAVDFSSSSGM-YDHARNFDAINRLSNSFAIDESTVDATTEKELGNEYFKQKK 96
Query: 601 FKEAIDCYSRSIGLSPTAVAFANRAMAYLKIKRFEEAENDCTEALNLDDRYIKAYSRRAT 780
+KEAI+CYSRSI LSPTAVA+ANRAMAYLKIKR +AE+DCTEALNLDDRYIKAYSRRAT
Sbjct: 97 YKEAIECYSRSIALSPTAVAYANRAMAYLKIKR--QAEDDCTEALNLDDRYIKAYSRRAT 154
Query: 781 ARKQLGKLKESIEDSEFALRLDPQNQELKKQNAEAKAMYEKE------------------ 906
RK+LGKLKESIEDSEFAL+L+P NQE+KKQ AE K++YEK
Sbjct: 155 TRKELGKLKESIEDSEFALKLEPNNQEIKKQYAEVKSLYEKASDSTICCYSGCYISLLQF 214
Query: 907 ILEKAAGVMESSTQEVQGAGANENRXXXXXXXXXXXXXXXXNGSQEGATLSSGPDGSKIV 1086
+ KA+ + SS Q Q G +E S + DG +V
Sbjct: 215 FVTKASESLRSSLQGAQKGGRSEASVNGHAVHPVSNVTQRTGASASQKDKAKENDGDGVV 274
Query: 1087 -----------------------------------------HGVNKQELRMSVXXXXXXX 1143
+QEL+ SV
Sbjct: 275 KKSVYVEEIKNKSTGAGSRSDGQLGNDSRANAIPSSNAESIQVTGRQELKASVKELASQA 334
Query: 1144 XXXXXXXXEKHIIPPKSAYQFEISWKKLSGDRALQARLLKVISPSTLPQLFKSSLSATLL 1323
K+I PP SAYQFE+SW+ SGDRALQA LLKV++PS LPQ+FK++LS T+L
Sbjct: 335 ASRAMAEAAKNITPPNSAYQFEVSWRGFSGDRALQAHLLKVVTPSALPQIFKNALSVTIL 394
Query: 1324 IDIIKCISTFFKEETELAVKFLESLTLVSRFDMIIMCLFAADKFDLEKMWDEVFLNAAAV 1503
IDIIKC+S+FF ++ +LAVK+LE+LT V RFD++IMCL + DK DL KMWDEVF + A
Sbjct: 395 IDIIKCVSSFFIDDMDLAVKYLENLTEVPRFDILIMCLPSTDKADLLKMWDEVFC-SEAT 453
Query: 1504 PVEYAETLGKLRPKYC 1551
P++YAE L K+R +YC
Sbjct: 454 PIKYAEILDKMRSRYC 469
>ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis
sativus] gi|449517788|ref|XP_004165926.1| PREDICTED: RNA
polymerase II-associated protein 3-like [Cucumis sativus]
Length = 458
Score = 391 bits (1005), Expect = e-106
Identities = 233/479 (48%), Positives = 287/479 (59%), Gaps = 42/479 (8%)
Frame = +1
Query: 244 MARVPNKHNHDPNLDFQGFLNDLQDWXXXXXXXXXXXXAQSHEEKEVGSSFQRAGVVGGD 423
MA KH D LDFQGFLNDLQDW S + K+ Q G D
Sbjct: 1 MADSSAKHGRDQLLDFQGFLNDLQDWEV------------SFKGKDKKLKPQAIGKEKED 48
Query: 424 RISTRKAPLVDFSENSAQHFDYSKSFNDINRLSSSL-TEESSPNATSEKDLGNEYFKQKK 600
R T KA D Y K ++ +NRLS + TE S +A SEK+ GNEYFKQKK
Sbjct: 49 RRQTEKASAAD----------YMKQYDAVNRLSRNFQTEGSFVDAASEKEQGNEYFKQKK 98
Query: 601 FKEAIDCYSRSIGLSPTAVAFANRAMAYLKIKRFEEAENDCTEALNLDDRYIKAYSRRAT 780
FKEAIDCYSRSI LSPTAVAFANRAMAYLKI+RF+EAE+DCTEALNLDDRYIKAYSRRAT
Sbjct: 99 FKEAIDCYSRSIALSPTAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRAT 158
Query: 781 ARKQLGKLKESIEDSEFALRLDPQNQELKKQNAEAKAMYEKEILEKAAGVMESST----- 945
ARK+LGK KE++ED+EFA RL+P NQE+KKQ+A+ +A K ILEKA+G SST
Sbjct: 159 ARKELGKAKEALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASRSSTKNKKT 218
Query: 946 ----------QEVQGAGANENRXXXXXXXXXXXXXXXXNGSQEGATLSSGPD---GSKIV 1086
Q++ ++ +R N + A L D G++I
Sbjct: 219 LKKSDSDAKIQDIPPVSSSTSRTGLLAARERVEENGGGNAVKTSARLEESEDTSSGAEIT 278
Query: 1087 -----------------------HGVNKQELRMSVXXXXXXXXXXXXXXXEKHIIPPKSA 1197
H KQEL+ SV K+II P +A
Sbjct: 279 SKKVATNGFHKDSSSYLSALERDHLPRKQELKASVYELASQAASRSMVEAAKNIIAPTTA 338
Query: 1198 YQFEISWKKLSGDRALQARLLKVISPSTLPQLFKSSLSATLLIDIIKCISTFFKEETELA 1377
YQFE+SW+ SGD+ALQARLLK ISP+ LPQ+FK +L+A +LIDI+KC++TFF EE LA
Sbjct: 339 YQFEVSWRGFSGDQALQARLLKTISPAKLPQIFKDALTAPILIDIVKCVATFFIEEPALA 398
Query: 1378 VKFLESLTLVSRFDMIIMCLFAADKFDLEKMWDEVFLNAAAVPVEYAETLGKLRPKYCL 1554
+ FLE+L V RF +++MCL +++KFDL K+WDEVF + AVP+EYAE L LR KY L
Sbjct: 399 ISFLENLVNVPRFSILMMCLSSSEKFDLLKIWDEVFCD-EAVPIEYAEMLDSLRSKYFL 456