BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00004000
         (696 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283650.1| PREDICTED: 30S ribosomal protein S9, chlorop...   276   2e-72
ref|XP_002302464.1| predicted protein [Populus trichocarpa] gi|2...   270   3e-70
ref|XP_002889003.1| hypothetical protein ARALYDRAFT_476636 [Arab...   269   4e-70
ref|XP_002510328.1| ribosomal protein S9, putative [Ricinus comm...   269   4e-70
sp|P82278.1|RR9_SPIOL RecName: Full=30S ribosomal protein S9, ch...   268   6e-70

>ref|XP_002283650.1| PREDICTED: 30S ribosomal protein S9, chloroplastic [Vitis vinifera]
           gi|147855629|emb|CAN79164.1| hypothetical protein
           VITISV_019246 [Vitis vinifera]
           gi|302142422|emb|CBI19625.3| unnamed protein product
           [Vitis vinifera]
          Length = 209

 Score =  276 bits (707), Expect = 2e-72
 Identities = 139/149 (93%), Positives = 145/149 (97%)
 Frame = -2

Query: 461 ESETISIEKYVKSRLPGGFAAQTIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGN 282
           E ET  ++KYVKSRLPGGFAAQTIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGN
Sbjct: 61  ELETADLKKYVKSRLPGGFAAQTIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGN 120

Query: 281 PLWLQYIRVPLVTLGYESTYDVFVKAHGGGLSGQAQAISLGIARALLKVSENHRVPLRKE 102
           PLWLQY++VPLVTLGYES+YDVFVKAHGGGLSGQAQAISLGIARALLKVSE+HR PLRKE
Sbjct: 121 PLWLQYVKVPLVTLGYESSYDVFVKAHGGGLSGQAQAISLGIARALLKVSEDHRGPLRKE 180

Query: 101 GLLTRDSRVVERKKVGLKKARKAPQFSKR 15
           GLLTRDSRVVERKKVGLKKARKAPQFSKR
Sbjct: 181 GLLTRDSRVVERKKVGLKKARKAPQFSKR 209


>ref|XP_002302464.1| predicted protein [Populus trichocarpa] gi|222844190|gb|EEE81737.1|
           predicted protein [Populus trichocarpa]
          Length = 211

 Score =  270 bits (689), Expect = 3e-70
 Identities = 141/192 (73%), Positives = 155/192 (80%), Gaps = 2/192 (1%)
 Frame = -2

Query: 584 QISPKTQTLSFSRPTKPTKLIKXXXXXXXXXXXXXXXXXXLESETIS--IEKYVKSRLPG 411
           QIS K  TLSFSR    +  +                      ET +  ++K VKSRLPG
Sbjct: 20  QISQKPNTLSFSRSKSLSLSLSPYSNSNKQPFTLRVTATVASPETTTTDLKKLVKSRLPG 79

Query: 410 GFAAQTIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYIRVPLVTLGYE 231
           GFAAQ I GTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQY++VPLVTLGYE
Sbjct: 80  GFAAQPIHGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYE 139

Query: 230 STYDVFVKAHGGGLSGQAQAISLGIARALLKVSENHRVPLRKEGLLTRDSRVVERKKVGL 51
           S+YDVFVKAHGGGLSGQAQAISLG+ARALLKVS+NHR+PL++EGLLTRDSR+VERKKVGL
Sbjct: 140 SSYDVFVKAHGGGLSGQAQAISLGVARALLKVSQNHRIPLKREGLLTRDSRIVERKKVGL 199

Query: 50  KKARKAPQFSKR 15
           KKARKAPQFSKR
Sbjct: 200 KKARKAPQFSKR 211


>ref|XP_002889003.1| hypothetical protein ARALYDRAFT_476636 [Arabidopsis lyrata subsp.
           lyrata] gi|297334844|gb|EFH65262.1| hypothetical protein
           ARALYDRAFT_476636 [Arabidopsis lyrata subsp. lyrata]
          Length = 208

 Score =  269 bits (687), Expect = 4e-70
 Identities = 137/190 (72%), Positives = 152/190 (80%)
 Frame = -2

Query: 584 QISPKTQTLSFSRPTKPTKLIKXXXXXXXXXXXXXXXXXXLESETISIEKYVKSRLPGGF 405
           Q+S +  T+SF R      L                     E E I ++KYVKSRLPGGF
Sbjct: 19  QVSQRPNTISFPRANSVFALPAKSDRRSSLSITATVAAPPEEEEIIELKKYVKSRLPGGF 78

Query: 404 AAQTIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYIRVPLVTLGYEST 225
           AAQ IIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQY++VPLVTLGYE++
Sbjct: 79  AAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYENS 138

Query: 224 YDVFVKAHGGGLSGQAQAISLGIARALLKVSENHRVPLRKEGLLTRDSRVVERKKVGLKK 45
           YD+FVKAHGGGLSGQAQAI+LG+ARALLKVS +HR PL+KEGLLTRD+RVVERKK GLKK
Sbjct: 139 YDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLLTRDARVVERKKAGLKK 198

Query: 44  ARKAPQFSKR 15
           ARKAPQFSKR
Sbjct: 199 ARKAPQFSKR 208


>ref|XP_002510328.1| ribosomal protein S9, putative [Ricinus communis]
           gi|223551029|gb|EEF52515.1| ribosomal protein S9,
           putative [Ricinus communis]
          Length = 200

 Score =  269 bits (687), Expect = 4e-70
 Identities = 143/195 (73%), Positives = 157/195 (80%), Gaps = 5/195 (2%)
 Frame = -2

Query: 584 QISPKTQTLSFSRP-----TKPTKLIKXXXXXXXXXXXXXXXXXXLESETISIEKYVKSR 420
           QIS K  TLSFS+      +KP+ L                     E +T  ++K VKSR
Sbjct: 20  QISQKPNTLSFSKSLSLCNSKPSPL--------------RVSATVAEPQTADLKKLVKSR 65

Query: 419 LPGGFAAQTIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYIRVPLVTL 240
           LPGGFAAQ I GTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQY++VPLVTL
Sbjct: 66  LPGGFAAQPIFGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTL 125

Query: 239 GYESTYDVFVKAHGGGLSGQAQAISLGIARALLKVSENHRVPLRKEGLLTRDSRVVERKK 60
           GYE++YDVFVKAHGGGLSGQAQAISLG+ARALLKVS++HR PL+KEGLLTRDSRVVERKK
Sbjct: 126 GYENSYDVFVKAHGGGLSGQAQAISLGVARALLKVSDSHRPPLKKEGLLTRDSRVVERKK 185

Query: 59  VGLKKARKAPQFSKR 15
           VGLKKARKAPQFSKR
Sbjct: 186 VGLKKARKAPQFSKR 200


>sp|P82278.1|RR9_SPIOL RecName: Full=30S ribosomal protein S9, chloroplastic; Flags:
           Precursor gi|188036210|pdb|3BBN|I Chain I, Homology
           Model For The Spinach Chloroplast 30s Subunit Fitted To
           9.4a Cryo-Em Map Of The 70s Chlororibosome.
           gi|7578887|gb|AAF64170.1|AF242547_1 plastid ribosomal
           protein S9 precursor, partial [Spinacia oleracea]
          Length = 197

 Score =  268 bits (686), Expect = 6e-70
 Identities = 137/189 (72%), Positives = 152/189 (80%)
 Frame = -2

Query: 581 ISPKTQTLSFSRPTKPTKLIKXXXXXXXXXXXXXXXXXXLESETISIEKYVKSRLPGGFA 402
           ++PK QTL  +R TKP  L                      +ET  +EK+VKSRLPGGFA
Sbjct: 10  LTPKPQTLPMAR-TKPFSLSNPAVVKPLVITATSATAPVEVAETADLEKFVKSRLPGGFA 68

Query: 401 AQTIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYIRVPLVTLGYESTY 222
           AQT+IGTGRRKCAIARVVLQEGTGK IINYRDAKEYLQGNPLWLQY++ PL TLGYE+ Y
Sbjct: 69  AQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNY 128

Query: 221 DVFVKAHGGGLSGQAQAISLGIARALLKVSENHRVPLRKEGLLTRDSRVVERKKVGLKKA 42
           DVFVKAHGGGLSGQAQAISLG+ARALLKVS +HR PL++EGLLTRDSR+VERKK GLKKA
Sbjct: 129 DVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEGLLTRDSRIVERKKPGLKKA 188

Query: 41  RKAPQFSKR 15
           RKAPQFSKR
Sbjct: 189 RKAPQFSKR 197