BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00003938
         (1211 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003565610.1| PREDICTED: putative F-box/LRR-repeat protein...   144   3e-32
ref|XP_003565630.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g...   142   2e-31
ref|NP_001141820.1| uncharacterized LOC100273961 [Zea mays] gi|1...   136   1e-29
ref|XP_003565629.1| PREDICTED: F-box protein At4g09920-like [Bra...   132   2e-28
ref|NP_001159080.1| F-box domain containing protein [Zea mays] g...   127   4e-27

>ref|XP_003565610.1| PREDICTED: putative F-box/LRR-repeat protein At5g54820-like
            [Brachypodium distachyon]
          Length = 522

 Score =  144 bits (364), Expect = 3e-32
 Identities = 122/365 (33%), Positives = 175/365 (47%), Gaps = 40/365 (10%)
 Frame = -1

Query: 977  EKTRDRISELPDGILDFILSLVPIKYAVRTSTLSGRWRNLWKSQWSYATDLDFGE-EFAK 801
            ++  DR+S LPD +L  IL+ +P K+AVRTS LS RW  LW    + +  LDF + +F +
Sbjct: 7    DEEEDRLSGLPDDVLHSILARLPFKHAVRTSALSRRWPRLWLHALAASPVLDFTDPDFVR 66

Query: 800  VQTQEQFVDTVNRYLFLHKGNKIDRFRLYFHPGDEYKSDVEKWIKFATLRGVEQL-VLIF 624
              ++ QFV TVNR L       +   R+ F P   ++ DV  WI  A   G  ++ V + 
Sbjct: 67   GHSRAQFVATVNRCLSARGAAPLRALRVAFSPFGAFERDVVGWISAALGSGATEVDVDLR 126

Query: 623  CRGSENYYTLE-ELEDDKG------KYELPDILF-SCASLIHLSSSHTKLN---PSLEFT 477
             +G      +E + EDD G      + EL   LF S +SL  LS S   L    P     
Sbjct: 127  AQGRRRSGGIEADAEDDGGGTFRRTEVELRGDLFCSPSSLSRLSLSRFSLRHVPPGA--A 184

Query: 476  GFSLLQTLRLNQVSITDETLESLLAKCPLLSNLYIRLCFSLCSIKISGQNLRCLTLLGNS 297
            G + L +L L+ V +TD+ L   ++ CP+L  L +R C  L +++I+G  LR L ++   
Sbjct: 185  GLAGLTSLSLSHVDVTDDALRDAVSGCPVLEFLSLRSCDLLSNVRIAGGRLRGLEVVRCQ 244

Query: 296  GYEIDIFAPNLKSFHFHGDLFYEYSFRNVSALEDVFISSDGCEFTE-------------L 156
              ++ + AP L+SF FHGDL Y    R   +    FI S G   T              L
Sbjct: 245  VRQLQVAAPALESFAFHGDLMY---LREDDSKPLEFIGSKGNNVTPPPSEATPELRDAYL 301

Query: 155  EH-------------DYIHILSSVSHIKILTMCIGPPMHVARAEEFIPEDLP-ITLPNLQ 18
             H              Y   L+ V+H KILT+C    +H+     F    +P I  PNLQ
Sbjct: 302  SHVDFSGEDEVFDGFAYTEFLNKVAHAKILTICSVALLHIEEERFF---SMPTIDTPNLQ 358

Query: 17   ELQIL 3
            ELQ+L
Sbjct: 359  ELQVL 363


>ref|XP_003565630.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Brachypodium
            distachyon]
          Length = 520

 Score =  142 bits (357), Expect = 2e-31
 Identities = 116/357 (32%), Positives = 172/357 (48%), Gaps = 32/357 (8%)
 Frame = -1

Query: 977  EKTRDRISELPDGILDFILSLVPIKYAVRTSTLSGRWRNLWKSQWSYATDLDFGEE-FAK 801
            E  +DR+S LPD +L  I+  VP K AVRT+ LS RW  LW    + +  LDF +  F +
Sbjct: 7    EDPQDRLSGLPDDVLHSIIGRVPFKQAVRTNALSRRWPRLWLHALAASGVLDFTDRGFVR 66

Query: 800  VQTQEQFVDTVNRYLFLHKGN-KIDRFRLYFHPGDEYKSDVEKWIKFATLRGVEQLVLIF 624
             Q++   V TVNR L +  G   ID  R+   P   ++ DV  WI  A  RG  ++ +  
Sbjct: 67   SQSRAHIVATVNRCLRVRGGGAPIDVLRVSLCPFGAFERDVVGWIAAALRRGAREVDVNL 126

Query: 623  CRGSENYYTLEELEDDKGKYELPDILFSC-ASLIHLSSSHTKL-NPSLEFTGFSLLQTLR 450
             +G           + + + ELP  LF   +SL  LS     L N      G + L +L 
Sbjct: 127  TQGRVELGA--AFVNCRTELELPGDLFCAESSLARLSLGRCSLSNVPPGAPGLAGLTSLS 184

Query: 449  LNQVSITDETLESLLAKCPLLSNLYIRLCFSLCSIKISGQNLRCLTLLGNSGY-EIDIFA 273
            L  V ITD+ +   +A C LL  L +R C  L  ++I+G+NLR L ++G     ++ + A
Sbjct: 185  LTHVDITDDAVRDTVACCRLLEFLSLRNCHLLKFVRIAGENLRGLEVVGCLDVRQLQVAA 244

Query: 272  PNLKSFHFHGDLFYEYSFRNVSALE------------------------DVFISSDGCEF 165
            P L+SF FHGD+ Y + +R   +LE                        D ++S  G   
Sbjct: 245  PALESFAFHGDILY-FKYREDESLEFEPVEFIGKGNNTQTPSEATPLLRDAYLSHIGFGV 303

Query: 164  TE---LEHDYIHILSSVSHIKILTMCIGPPMHVARAEEFIPEDLPITLPNLQELQIL 3
             +    E  + +++  V+H KILT+C    +H+     F   +L I  PNLQELQ+L
Sbjct: 304  YDDPLHEFAFSNLMEKVAHAKILTICSVGLLHIEETCNFY--ELMIDTPNLQELQLL 358


>ref|NP_001141820.1| uncharacterized LOC100273961 [Zea mays] gi|194706054|gb|ACF87111.1|
            unknown [Zea mays] gi|414876881|tpg|DAA54012.1| TPA:
            F-box domain containing protein [Zea mays]
          Length = 528

 Score =  136 bits (342), Expect = 1e-29
 Identities = 113/366 (30%), Positives = 180/366 (49%), Gaps = 32/366 (8%)
 Frame = -1

Query: 1004 IREAMREMTEKTRDRISELPDGILDFILSLVPIKYAVRTSTLSGRWRNLWKSQWSYATDL 825
            I+    E+ E+  DR+S LPD IL  IL  +P+K+A RTS LS RW   W    + +  L
Sbjct: 9    IKRGDMEVQEQREDRLSRLPDDILHSILRGIPLKHAARTSALSRRWARTWLRALASSRVL 68

Query: 824  DFGE-EFAKVQTQEQFVDTVNRYLFLHK--GNKIDRFRLYF-----HPGD--EYKSDVEK 675
            DF + +FA+ Q   +   TV+R L LH   G  +D FRL        PG    ++ DV  
Sbjct: 69   DFTDRDFARGQAPARAAATVSRCLQLHAEYGAPLDVFRLAVTAPAPAPGSTGAFERDVVG 128

Query: 674  WIKFATLRGVEQLVLIFCRGSENYYTLEELEDDKGKY-ELP-DILFSCASLIHLSSSHTK 501
            W+  A  RG  ++ +             +  D+   + ELP D+  +  SL  L+    +
Sbjct: 129  WVVSAVARGAREVEVDLRPPPPPLAAKADAGDESAAFVELPGDLFVATNSLARLALGGFR 188

Query: 500  LN--PSLEFTGFSLLQTLRLNQVSITDETLESLLAKCPLLSNLYIRLCFSLCSIKISGQN 327
            L   P+    G   L++L L+   +TDE +  +++ C  L  L ++ C  L S++I G+ 
Sbjct: 189  LRAVPAGLAEG---LRSLSLSHADVTDEAVRDIVSSCRALEVLSLQGCNLLRSVRIDGET 245

Query: 326  LRCLTLLGNSGY-EIDIFAPNLKSFHFHGDLFYEYS------------FRNVSALEDVFI 186
            LR L ++   G  E+ + AP+L+SF FHGD  Y  S              +  AL D ++
Sbjct: 246  LRSLEIVRCLGVRELRVNAPSLESFAFHGDNVYSTSDDDDDDLSSAVDLGSTPALRDAYL 305

Query: 185  SSDGCE-----FTELEHDYIHILSSVSHIKILTMCIGPPMHVARAEEFIPEDLPITLPNL 21
            S  G +     + E E+ Y + LS V+H ++LT+C    +H+     + P  + I + ++
Sbjct: 306  SHIGFDDAKNAYDEREYAYSNFLSCVAHARVLTLCSVGLLHLWAQLSYDPL-VEIDMTSV 364

Query: 20   QELQIL 3
            QELQ+L
Sbjct: 365  QELQLL 370


>ref|XP_003565629.1| PREDICTED: F-box protein At4g09920-like [Brachypodium distachyon]
          Length = 496

 Score =  132 bits (331), Expect = 2e-28
 Identities = 113/353 (32%), Positives = 168/353 (47%), Gaps = 28/353 (7%)
 Frame = -1

Query: 977  EKTRDRISELPDGILDFILSLVPIKYAVRTSTLSGRWRNLWKSQWSYATDLDFGEE-FAK 801
            E+ +DR+S LPD +L  I+  VP K AVRT+ LS RW  LW    + +  LDF +  F +
Sbjct: 7    EEPQDRLSGLPDDVLHSIIGRVPFKQAVRTNALSRRWPRLWLHALAASGVLDFTDRGFVR 66

Query: 800  VQTQEQFVDTVNRYLFLHKGN-KIDRFRLYFHPGDEYKSDVEKWIKFATLRGVEQLVLIF 624
             Q++   V TVNR L +  G   ID  R+   P   ++ DV  WI  A  RG  ++ +  
Sbjct: 67   SQSRAHIVATVNRCLRVRGGGAPIDVLRVSLCPFGAFERDVVGWIAAALRRGAREVDVNL 126

Query: 623  CRGSENYYTLEELEDDKGKYELPDILFSC-ASLIHLSSSHTKL-NPSLEFTGFSLLQTLR 450
             +G           + + + ELP  LF   +SL  LS     L N      G + L +L 
Sbjct: 127  TQGRVELGA--AFVNCRTELELPGDLFCAESSLARLSLGRCSLSNVPPGAPGLAGLTSLS 184

Query: 449  LNQVSITDETLESLLAKCPLLSNLYIRLCFSLCSIKISGQNLRCLTLLGNSGY-EIDIFA 273
            L  V ITD+ +   +A C LL  L +R C  L  ++I+G+ LR L ++G     ++ + A
Sbjct: 185  LTHVDITDDAVRDTVACCRLLEFLSLRNCHVLKFVRIAGEKLRGLEVVGCLDVRQLQVAA 244

Query: 272  PNLKSFHFHGDL--FYE---YSFRNVS---------------ALEDVFISSDGCEFTE-- 159
            P L+SF FHGD+  F E   + F  V                 L D ++S  G    +  
Sbjct: 245  PALESFAFHGDILCFGEDDGFEFEPVEFIGKGNTRTPSEATPELRDAYLSHIGFGVYDDP 304

Query: 158  -LEHDYIHILSSVSHIKILTMCIGPPMHVARAEEFIPEDLPITLPNLQELQIL 3
              E  + +++  V+H KILT+C    +H+     FI   +      LQELQ+L
Sbjct: 305  LHEFAFSNLMEKVAHAKILTICSVGLLHIEEERGFIEHMMDPPNLQLQELQLL 357


>ref|NP_001159080.1| F-box domain containing protein [Zea mays]
            gi|195653587|gb|ACG46261.1| F-box domain containing
            protein [Zea mays]
          Length = 517

 Score =  127 bits (320), Expect = 4e-27
 Identities = 111/359 (30%), Positives = 176/359 (49%), Gaps = 34/359 (9%)
 Frame = -1

Query: 977  EKTRDRISELPDGILDFILSLVPIKYAVRTSTLSGRWRNLWKSQWSYATDLDFGE-EFAK 801
            E+  DR+S LPD IL  IL  +P+K+A RTS LS RW   W    + +  LDF + +FA+
Sbjct: 2    EQREDRLSRLPDDILHSILRGLPLKHAARTSALSRRWARTWLRALASSRVLDFTDHDFAR 61

Query: 800  VQTQEQFVDTVNRYLFLHK--GNKIDRFRLYF-----HPGD--EYKSDVEKWIKFATLRG 648
             Q   +   TV+R L LH   G  +D FRL        PG    ++ DV  W+  A  RG
Sbjct: 62   GQAPARAAATVSRCLQLHAEYGAPLDVFRLAVTAPAPAPGSTGAFERDVVGWVASAVARG 121

Query: 647  VEQLVLIF--CRGSENYYTLEELEDDKGKY-ELP-DILFSCASLIHLSSSHTKLN--PSL 486
              ++ +               +  D+   + ELP D+  + +SL  L+    +L   P+ 
Sbjct: 122  AREVEVDLRPLPPPPPLAAKADAGDESAAFVELPGDLFVATSSLARLALGGFRLRAVPAG 181

Query: 485  EFTGFSLLQTLRLNQVSITDETLESLLAKCPLLSNLYIRLCFSLCSIKISGQNLRCLTLL 306
               G   L++L L    +TDE +  +++ C  L  L ++ C  L SI+I G+ LR L ++
Sbjct: 182  LAEG---LRSLSLGHADVTDEAVRDIVSSCRALEVLSLQGCNLLRSIRIDGETLRSLEIV 238

Query: 305  GNSGY-EIDIFAPNLKSFHFHGDLFYEYS------------FRNVSALEDVFISSDGCE- 168
               G  E+ + AP+L+SF FHGD  Y  S              +  AL D ++S  G + 
Sbjct: 239  RCLGVRELRVNAPSLESFAFHGDNVYSTSDDDDEDLSSAVDLGSTPALRDAYLSHIGFDD 298

Query: 167  ----FTELEHDYIHILSSVSHIKILTMCIGPPMHVARAEEFIPEDLPITLPNLQELQIL 3
                + E E+ Y + LS V++ ++LT+C    +H+     + P  + I + ++QELQ+L
Sbjct: 299  AKNAYDEREYAYSNFLSCVAYARVLTLCSVGLLHLWAQLSYDPL-VEIDMTSVQELQLL 356