BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00003936
         (2053 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310063.1| predicted protein [Populus trichocarpa] gi|2...   373   e-100
ref|XP_002306375.1| predicted protein [Populus trichocarpa] gi|2...   367   5e-99
ref|XP_002530980.1| conserved hypothetical protein [Ricinus comm...   366   1e-98
ref|XP_001767294.1| RNA helicase [Physcomitrella patens subsp. p...   176   3e-41
ref|XP_002332671.1| hypothetical protein POPTRDRAFT_789212 [Popu...   171   5e-40

>ref|XP_002310063.1| predicted protein [Populus trichocarpa] gi|222852966|gb|EEE90513.1|
            predicted protein [Populus trichocarpa]
          Length = 687

 Score =  373 bits (957), Expect = e-100
 Identities = 206/420 (49%), Positives = 268/420 (63%), Gaps = 33/420 (7%)
 Frame = -2

Query: 1341 TPTYEIPENIVGL------PGVLKKPLSPSTYKDYFASLLYAEDYYVEKWSNFSLSNVTL 1180
            +P Y IP++I  L      PGVL KPLS STYKDYFA+LLYAED+Y+EKWS F L N+TL
Sbjct: 241  SPIYAIPKDIEDLIKRDKVPGVLNKPLSLSTYKDYFAALLYAEDFYIEKWSEFKLENITL 300

Query: 1179 ELHKAAVYEKPNRTKKLINKGKADDTLMVSFQMDSIPARKPFLLSGDFVFVRPSGGTLKP 1000
            +L +A + +K  R +      + DD + V F++DS   R+PFLLS DF F RPSG   +P
Sbjct: 301  KLQRAEIIKKSRRNEYRNETYEKDDKIFVEFEIDSCCERRPFLLSRDFAFARPSGQMTEP 360

Query: 999  FQGILHRVVKNT-LLVEFKDDFHSQHHPNHEYDMTFSFNRVCLKRCHKAIETAATNSSLL 823
             QGI++RV ++T ++VEF  DF  QHH   +YD++FSFNRVCLKR H AIE AA++    
Sbjct: 361  CQGIIYRVERSTRVVVEFGKDFLLQHHSTRKYDVSFSFNRVCLKRAHHAIE-AASDPLFK 419

Query: 822  KFLFPDNVT--TFSYSSSLIDLHQSLIEKEAFAILHVCYLKGAPPYLIEGPPSVTS-EKQ 652
             FLFPD V+   F  S+ L   +  L   ++ A+  +   +G PPY++EGP  +    + 
Sbjct: 420  SFLFPDGVSKKIFPISTPLHFCNHKLDVYQSSAVREILSFQGPPPYIVEGPLCLNKFSEL 479

Query: 651  SKTGKLIQGMVLQIIRSSPRARVLLCAPLNNTCDVLMRSLKREIPNSDIFRANAAF---- 484
            S+TG +IQ  VLQI +SS + R+L+CAP+N TCD+LM+SL  +IP SD+FRANAAF    
Sbjct: 480  SRTGLVIQEAVLQIYQSSSKLRILICAPINRTCDLLMQSLNNDIPKSDMFRANAAFREID 539

Query: 483  -------------------PSLKDLKNFKVIISAFASSFRLNTEGITAGHFSHIFMVDAS 361
                               PSL++L+ F+VI+S F SSFRL  EGI AGHFSHIF+VDAS
Sbjct: 540  GVPIDILPSCAYKGECFTCPSLQELRKFRVILSTFVSSFRLRNEGIAAGHFSHIFLVDAS 599

Query: 360  SATEPETMVTLANLXXXXXXXXXXXXKRNFSRWVRSDIGRRHGLQKSYFQRLFEM*PYSS 181
            SATEPE MV LANL              N S WVRS+I R++GL  SYF+RL    PY S
Sbjct: 600  SATEPEAMVPLANLASEETAVIVTGAPGNHSGWVRSNIARKNGLMTSYFERLRHSKPYRS 659


>ref|XP_002306375.1| predicted protein [Populus trichocarpa] gi|222855824|gb|EEE93371.1|
            predicted protein [Populus trichocarpa]
          Length = 773

 Score =  367 bits (943), Expect = 5e-99
 Identities = 201/419 (47%), Positives = 270/419 (64%), Gaps = 34/419 (8%)
 Frame = -2

Query: 1341 TPTYEIPENIVGL------PGVLKKPLSPSTYKDYFASLLYAEDYYVEKWSNFSLSNVTL 1180
            +P Y +P++I  L      P VL + LSPSTYKDYFA+LLYAED+Y+EKWS F L N+ L
Sbjct: 323  SPIYAVPKDIEDLIKRDIVPEVLNEMLSPSTYKDYFAALLYAEDFYIEKWSKFKLKNIAL 382

Query: 1179 ELHKAAVYEKPNRTKKLINKGKADDTLMVSFQMDSIPARKPFLLSGDFVFVRPSGGTLKP 1000
            +L  AA+ +K  R +      + D+   V F++DS   ++PFLLS DF F RPSG   +P
Sbjct: 383  KLKDAAIIKKRGRNEYFGESHEKDNKTFVEFEIDSCREKRPFLLSRDFAFARPSGQKTEP 442

Query: 999  FQGILHRVVKNTL-LVEFKDDFHSQHHPNHEYDMTFSFNRVCLKRCHKAIETAATNSSLL 823
            +QG+++RVV++T+ LVEF +DF  QHH   EYD++FSFNRVCLKR H+AIE AA++ S  
Sbjct: 443  YQGVIYRVVRSTIVLVEFGEDFLLQHHSTREYDVSFSFNRVCLKRAHQAIE-AASDPSFK 501

Query: 822  KFLFPDNV--TTFSYSSSLIDLHQSLIEKEAFAILHVCYLKGAPPYLIEGP--PSVTSEK 655
             FLFP+ V   +   S+ L  ++  L   +  A+  +   +G PPYL+EGP      S++
Sbjct: 502  NFLFPNFVHRKSIPTSTPLHFINHKLDAYQRSAVHEILSFRGPPPYLVEGPLCSKEYSKQ 561

Query: 654  QSKTGKLIQGMVLQIIRSSPRARVLLCAPLNNTCDVLMRSLKREIPNSDIFRANAAF--- 484
             S+ G ++Q  VLQI +SS + R+L+CAP+N TCDVLM+SLK +IP SD+FRANAAF   
Sbjct: 562  LSRIGLVVQEAVLQIYQSSSKHRILICAPINRTCDVLMQSLKIDIPESDMFRANAAFREI 621

Query: 483  --------------------PSLKDLKNFKVIISAFASSFRLNTEGITAGHFSHIFMVDA 364
                                PS+++L+ F+VI+S F SSFRL+ EGI AGHFSHIF+V+A
Sbjct: 622  DGVPIDILTSCVYKRDCFTCPSIRELRKFRVILSTFVSSFRLHNEGIVAGHFSHIFLVNA 681

Query: 363  SSATEPETMVTLANLXXXXXXXXXXXXKRNFSRWVRSDIGRRHGLQKSYFQRLFEM*PY 187
            SSATEPE MV LANL              N S WVRS+I R +GL  SYF+RL +  PY
Sbjct: 682  SSATEPEAMVALANLASENTAVIVTGAPGNHSGWVRSNIARENGLMTSYFERLRDSKPY 740


>ref|XP_002530980.1| conserved hypothetical protein [Ricinus communis]
            gi|223529456|gb|EEF31415.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 710

 Score =  366 bits (940), Expect = 1e-98
 Identities = 211/431 (48%), Positives = 274/431 (63%), Gaps = 44/431 (10%)
 Frame = -2

Query: 1341 TPTYEIPENIVGL------PGVLKKPLSPSTYKDYFASLLYAEDYYVEKWSNFSLSNVTL 1180
            TP Y IP++I  L      P VLKKPLS STYKDYFA+LLYAEDYY+EKWS F L  +T+
Sbjct: 272  TPIYMIPKDIESLIKSDKVPEVLKKPLSLSTYKDYFAALLYAEDYYIEKWSKFKLVGITI 331

Query: 1179 ELHKAAVYEKPNRTKKLINKGKADDT---LMVSFQMDSIPARKPFLLSGDFVFVRPSGGT 1009
            +L + A+        K I  GK  +T    +V+F++DS   ++PFLLS DFVF RPSG T
Sbjct: 332  KLQETAI-------SKQIYFGKDYETDVKHLVAFEIDSSHEKRPFLLSRDFVFARPSGST 384

Query: 1008 LKPFQGILHRVVKNT-LLVEFKDDFHSQHHPNHEYDMTFSFNRVCLKRCHKAIETAATNS 832
             +PFQGI++RV ++T +LVEF +DFH+QH    +YD++FSFNRVCL+R H+AIE AA++ 
Sbjct: 385  TEPFQGIIYRVQRSTTVLVEFGEDFHAQHCSFQKYDVSFSFNRVCLRRAHQAIE-AASDP 443

Query: 831  SLLKFLFPD-NVTTFSYSSSLIDLHQSLIEKEAFAILHVCYLKGAPPYLIEGPPSVT--- 664
            S   F+FP   +   S SS  ++    L      A+  +  +  +PPYL+EGPP V    
Sbjct: 444  SFENFIFPSWGLRRLSSSSPNLNYINKLDANLNAAVHRIITIMESPPYLLEGPPCVAKVE 503

Query: 663  -------SEKQSKTGKLIQGMVLQIIRSSPRARVLLCAPLNNTCDVLMRSLKREIPNSDI 505
                   S++ S TG +IQ  V +I RSS + R+L+CAP+N TCDVLMRSLK EIP S++
Sbjct: 504  VKRKECNSKQLSSTGLIIQQAVFRIYRSSQKYRILICAPINRTCDVLMRSLK-EIPESEM 562

Query: 504  FRANAAF-----------------------PSLKDLKNFKVIISAFASSFRLNTEGITAG 394
            FRANAAF                       P L++L+ FK+I+S + SSF+L+ EGI AG
Sbjct: 563  FRANAAFREIDGVPTDILASSLYKGDCFACPKLQELRKFKIILSTYVSSFQLHNEGIAAG 622

Query: 393  HFSHIFMVDASSATEPETMVTLANLXXXXXXXXXXXXKRNFSRWVRSDIGRRHGLQKSYF 214
            HFSHIFMVDASSATEPE MV LAN              RN S WVRSD+ R++GL KSYF
Sbjct: 623  HFSHIFMVDASSATEPEAMVALANFANEKTTVIVTGAPRNHSGWVRSDLARKNGLMKSYF 682

Query: 213  QRLFEM*PYSS 181
            +RL E  PY +
Sbjct: 683  ERLCERTPYKN 693


>ref|XP_001767294.1| RNA helicase [Physcomitrella patens subsp. patens]
            gi|162681549|gb|EDQ67975.1| RNA helicase [Physcomitrella
            patens subsp. patens]
          Length = 885

 Score =  176 bits (445), Expect = 3e-41
 Identities = 125/442 (28%), Positives = 204/442 (46%), Gaps = 33/442 (7%)
 Frame = -2

Query: 1332 YEIPENIVG-------LPGVLKKPLSPSTYKDYFASLLYAEDYYVE-KWSNFSLSNVTLE 1177
            Y IP N+         LP V  + L    Y +YF++L++AE+  +E     + + NVT+ 
Sbjct: 224  YPIPPNVKEAILTKETLP-VFSEGLRKENYFEYFSTLMFAEELQMEVDIRAYDMQNVTM- 281

Query: 1176 LHKAAVYEKPNRTKKLINKGKADDTLMVSFQMDSIPARKPFLLSGDFVFVRPSGGTLKPF 997
                                K   TL+   ++  +  ++P ++  D ++ RPSG T   F
Sbjct: 282  -------------------WKVSHTLL-GLRVPGLAEKRPSVIYRDKIYARPSGTTATEF 321

Query: 996  QGILHRVVKNTLLVEFKDDFHSQHHPNHEYDMTFSFNRVCLKRCHKAIETAATNSSLLKF 817
            QG +H+V  N + + F D F+     N  YD+ FSF RV ++R H+ I+  A  + L  F
Sbjct: 322  QGYVHKVQANEVHLRFGDAFNKGFISNSRYDIRFSFGRVNIRRAHQGIQ--AAKALLDSF 379

Query: 816  LFPDNVTTFSYSSS--LIDLHQSLIEKEAFAILHVCYLKGAPPYLIEGPPSVTSEKQSKT 643
            LFP  V      SS  L   +++   ++  A+  +   +G+PPYLI GPP        KT
Sbjct: 380  LFPTTVVPSRTESSKKLTPFNRAANAEQMSAVQEILKKRGSPPYLIYGPPGT-----GKT 434

Query: 642  GKLIQGMVLQIIRSSPRARVLLCAPLNNTCDVLMRSLKREIPNSDIFRANA--------- 490
              +++ M LQ+ R+ P AR+L CAP N   D+L+  L   +   D+ R NA         
Sbjct: 435  VTVVEAM-LQVKRAHPNARILACAPSNLASDLLLERLIGSVEKRDMLRLNAYTRPVDDVP 493

Query: 489  --------------AFPSLKDLKNFKVIISAFASSFRLNTEGITAGHFSHIFMVDASSAT 352
                            P L  L+ ++++++ + S+  L+ + +  GHF+HIF+ +A   T
Sbjct: 494  SHIIPFCSIENDFFCTPGLASLEKYRIVVTTYWSAAMLDAQEVHPGHFTHIFLDEAGQGT 553

Query: 351  EPETMVTLANLXXXXXXXXXXXXKRNFSRWVRSDIGRRHGLQKSYFQRLFEM*PYSSNIY 172
            EPETMV++ NL             +     +RS +  ++GL KSY +RL  +  Y     
Sbjct: 554  EPETMVSIGNLANKNTVVVLAGDHQQLGPLIRSPVALKYGLDKSYLERLSSLTSY----- 608

Query: 171  QAY*EFWYGTLKSTGNGHVNIF 106
                      L S+GNG   ++
Sbjct: 609  ----------LPSSGNGQSLVY 620


>ref|XP_002332671.1| hypothetical protein POPTRDRAFT_789212 [Populus trichocarpa]
            gi|222836465|gb|EEE74872.1| hypothetical protein
            POPTRDRAFT_789212 [Populus trichocarpa]
          Length = 894

 Score =  171 bits (434), Expect = 5e-40
 Identities = 122/422 (28%), Positives = 201/422 (47%), Gaps = 36/422 (8%)
 Frame = -2

Query: 1338 PTYEIPENIVGL------PGVLKKPLSPSTYKDYFASLLYAEDYYVEK-WSNFSLSNVTL 1180
            P Y+IP++I  L      P V+   L+   Y  YF +LL  E+  +E+   +  +  VT+
Sbjct: 213  PRYDIPKDIRALIERKQIPDVIMGGLTIDNYASYFKTLLIMEEIQLEEDMRSHDMECVTM 272

Query: 1179 ELHKAAVYEKPNRTKKLINKGKADDTLMVSFQMDSIPARKPFLLSGDFVFVR--PSGGTL 1006
                               KG       +S  +  +  R+P L+ GD +FV+   +  T 
Sbjct: 273  R-----------------RKGN-----YLSLVVPGLAERRPSLVQGDDIFVKLADADDTT 310

Query: 1005 KPFQGILHRVVKNTLLVEFKDDFHSQHHPNHEYDMTFSFNRVCLKRCHKAIETAATNSSL 826
             P+QG ++RV  + + ++F  +FHS H+  H Y++ F +NRV ++R ++AI+ A    + 
Sbjct: 311  TPYQGYIYRVEADEVYLKFYQEFHSCHNDGHLYNVHFKYNRVSMRRLYQAIDAAKDLETE 370

Query: 825  LKFLFPDNVTTFSYSSSLIDLHQSLIEKEAFAILHVCYLKGAPPYLIEGPPSVTSEKQSK 646
            + F    + +    +S+L+ +  SL E++  ++  +   KG PPY+I GPP        K
Sbjct: 371  MLFPSETSGSRLIETSTLVPISCSLNEEQICSVEMILGCKGGPPYVIYGPPGT-----GK 425

Query: 645  TGKLIQGMVLQIIRSSPRARVLLCAPLNNTCDVLMRSLKRE----IPNSDIFRANA---- 490
            T  +I+  +LQ+ ++   AR+L+CAP N+  D L+  L  E    I   +IFR NA    
Sbjct: 426  TMTIIEA-ILQLYQNRKHARILVCAPSNSAADHLLEKLLSEEAVHIQEKEIFRLNATSRP 484

Query: 489  -------------------AFPSLKDLKNFKVIISAFASSFRLNTEGITAGHFSHIFMVD 367
                                 P L  L  +++IIS + S+  LN EG+  G FSHIF+ +
Sbjct: 485  FDDIKPDLIRFCLFDEHIFTCPPLGALTRYRIIISTYMSASLLNAEGVKRGQFSHIFLDE 544

Query: 366  ASSATEPETMVTLANLXXXXXXXXXXXXKRNFSRWVRSDIGRRHGLQKSYFQRLFEM*PY 187
            A  A+EPE+M++++N                    + S     +GL KSY +RLFE   Y
Sbjct: 545  AGQASEPESMISVSNFCNRDTVVVLAGDPMQLGPVIFSRDAESYGLGKSYLERLFECESY 604

Query: 186  SS 181
             S
Sbjct: 605  DS 606