BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00003896
         (2172 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278933.2| PREDICTED: zinc finger protein NUTCRACKER-li...   479   e-132
emb|CAN79105.1| hypothetical protein VITISV_006257 [Vitis vinifera]   470   e-130
ref|XP_002280155.2| PREDICTED: zinc finger protein NUTCRACKER is...   469   e-129
ref|XP_003529728.1| PREDICTED: zinc finger protein NUTCRACKER-li...   423   e-115
ref|XP_002527396.1| nucleic acid binding protein, putative [Rici...   411   e-112

>ref|XP_002278933.2| PREDICTED: zinc finger protein NUTCRACKER-like [Vitis vinifera]
          Length = 509

 Score =  479 bits (1232), Expect = e-132
 Identities = 279/525 (53%), Positives = 326/525 (62%), Gaps = 32/525 (6%)
 Frame = -3

Query: 1675 VLDENMSNLTCTSDEPLASSGSRSFASPHQTQTSAVKRKRNLPGNPDPDAEVIALSPKTL 1496
            ++DENMSNLT  S E  ASS +++ A        A K+KR+LPGNPDP+AEV+ALSPKTL
Sbjct: 6    MVDENMSNLTSASGEASASSANQAPA--------AAKKKRSLPGNPDPNAEVVALSPKTL 57

Query: 1495 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEVSCVHHEPS 1316
             ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRT+KEVRKKVYVCPE +CVHH+PS
Sbjct: 58   QATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYVCPEPTCVHHDPS 117

Query: 1315 RALGDLTGIKKHFSRKHGXXXXXXXXXXXKYAVQSDWKAHSKTCGTREYKCDCGTLFSRR 1136
            RALGDLTGIKKHFSRKHG           +YAVQSDWKAHSK CGTREY+CDCGTLFSRR
Sbjct: 118  RALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRR 177

Query: 1135 DSFITHRAFCDALAEESARAINTNPLISSQSGTSTQHMNVQQQIQFNMHDFPA-NPVKIE 959
            DSFITHRAFCDALAEESARAI  NPL+SSQ G+S+ H+N+Q Q+  + H   A   +K E
Sbjct: 178  DSFITHRAFCDALAEESARAITGNPLLSSQPGSSSSHLNLQPQL--HSHGLQAVLSLKRE 235

Query: 958  QQQHQ--YVRSEVPQWL-------ASSQPTLGDFSSSMLCARLEHEFSQSQQASSTHENS 806
            Q+QH    ++ ++P WL       A   P   D SSS+  A L+H           HEN 
Sbjct: 236  QEQHHSFNLKPDIPPWLACPPVLEAGPGPPSIDLSSSLFSASLDHPLIY-------HENP 288

Query: 805  NLNPTPSFPTYHPSTSPHMSATALLQKAAQMGATISKPA---MLTRPQHAHMSA----XX 647
              NP  + P++H + SPHMSATALLQ+AAQMG T+SKP+    + RP  AHMSA      
Sbjct: 289  --NPNSTLPSFHHTASPHMSATALLQQAAQMGVTMSKPSPSPPMLRPHQAHMSAANAGFS 346

Query: 646  XXXXXXXXXXXXXXXXXXXXXXXGFMHSLTAFGNKSTTPASGFM---------GQLSAPX 494
                                   GF+H L +FG+K+    SGFM         G  +   
Sbjct: 347  STAVATSTAGSDLGLSSRDEMASGFIHGLASFGSKAAV-TSGFMEHVATGAGAGAAAPSL 405

Query: 493  XXXXXXXXXXXXXXXXXXXXXXXXGMLNSKSDRNLSKKQKT------FEXXXXXXXXXXX 332
                                    GMLN K + NL +  KT      F            
Sbjct: 406  FHDMMSSLSSASGFGGPSFEEAFNGMLNPKRENNLQEITKTAMTKSHFSRSDHEGGGGND 465

Query: 331  GLTRDFLSLGAFPHRDYLNIPGLDQCMGSSIPYEQQNQNQKPWQG 197
            GLTRDFL L AF HRD+LNIPGLDQ M S+ PYEQQNQNQ PWQG
Sbjct: 466  GLTRDFLGLRAFSHRDFLNIPGLDQ-MNSASPYEQQNQNQTPWQG 509


>emb|CAN79105.1| hypothetical protein VITISV_006257 [Vitis vinifera]
          Length = 532

 Score =  470 bits (1209), Expect = e-130
 Identities = 288/544 (52%), Positives = 325/544 (59%), Gaps = 56/544 (10%)
 Frame = -3

Query: 1660 MSNLTCTSDEPLASSGSRS-----------FASPHQTQTS-----AVKRKRNLPGNPDPD 1529
            MSNLT  S E   SSG+R+           FA P+Q Q       +VK+KRNLPGNPDPD
Sbjct: 1    MSNLTSASGEASVSSGNRAETAPMYPQQQYFAPPNQAQAQVQAQPSVKKKRNLPGNPDPD 60

Query: 1528 AEVIALSPKTLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVC 1349
            AEVIALSPKTLMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVC
Sbjct: 61   AEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVC 120

Query: 1348 PEVSCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXKYAVQSDWKAHSKTCGTREY 1169
            PE SCVHH+PSRALGDLTGIKKHF RKHG           +YAVQSDWKAHSKTCGTREY
Sbjct: 121  PEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREY 180

Query: 1168 KCDCGTLFSRRDSFITHRAFCDALAEESARAINTNP-LISSQS----GTSTQH----MNV 1016
            +CDCGTLFSRRDSFITHRAFCDALAEESARAI  NP L+SSQ+     +ST H    M++
Sbjct: 181  RCDCGTLFSRRDSFITHRAFCDALAEESARAITGNPVLLSSQAAAGPSSSTPHSHSQMSL 240

Query: 1015 QQQIQFNM-HDFPANPVKIEQQQHQYVRSEVPQWLASSQPTLGDFSSSMLCARLEHEFSQ 839
            QQQ QFN  HDF A  +K EQQ        VP WL+S        SSS+   RL+H+F+Q
Sbjct: 241  QQQQQFNSNHDFHAFQMKKEQQSFSIRSEVVPPWLSS--------SSSLFPTRLDHDFTQ 292

Query: 838  SQQASSTHENSNLNPTPS----FPTYHPSTSPHMSATALLQKAAQMGATISK-------- 695
            + Q  + H+  N NP PS     P YHP+ SPHMSATALLQKAAQMGAT+SK        
Sbjct: 293  TTQDLALHDIQNPNPNPSLGPTLPPYHPTLSPHMSATALLQKAAQMGATMSKTTGGSGAS 352

Query: 694  PAMLTRPQHAHMSAXXXXXXXXXXXXXXXXXXXXXXXXXGFMHSLTAFGNK--------- 542
            P  + RP  AH+SA                         GF+  L  FGNK         
Sbjct: 353  PPAMIRPHQAHVSA---DHSCNNTTGFGLNLSSREEMGGGFVQGLAPFGNKAAAVPSAAA 409

Query: 541  STTPASGFMGQLSAP--XXXXXXXXXXXXXXXXXXXXXXXXXGMLNSKSDRN-----LSK 383
            +   A+G  G   +P                           GMLNS+ + N     L  
Sbjct: 410  AAAAATGPGGGAPSPSLLLQDMMTSLSSATGFDSSSFEDAFGGMLNSRKNGNNLHQTLPS 469

Query: 382  KQ--KTFEXXXXXXXXXXXGLTRDFLSLGAFPHRDYLNIPGLDQCMGSSIPYEQQNQNQK 209
            K    T             GLTRDFL L A  H D L+I GL  CM +S P++ QNQ QK
Sbjct: 470  KSTTTTATTHHSSGGAGNDGLTRDFLGLRALSHSDILSIAGLGTCMNTS-PHDHQNQTQK 528

Query: 208  PWQG 197
            PWQG
Sbjct: 529  PWQG 532


>ref|XP_002280155.2| PREDICTED: zinc finger protein NUTCRACKER isoform 2 [Vitis vinifera]
          Length = 509

 Score =  469 bits (1208), Expect = e-129
 Identities = 284/528 (53%), Positives = 321/528 (60%), Gaps = 40/528 (7%)
 Frame = -3

Query: 1660 MSNLTCTSDEPLASSGSRSFASPHQTQTSAVKRKRNLPGNPDPDAEVIALSPKTLMATNR 1481
            MSNLT  S E   SSG+R+       +T +VK+KRNLPGNPDPDAEVIALSPKTLMATNR
Sbjct: 1    MSNLTSASGEASVSSGNRA-------ETPSVKKKRNLPGNPDPDAEVIALSPKTLMATNR 53

Query: 1480 FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEVSCVHHEPSRALGD 1301
            F+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPE SCVHH+PSRALGD
Sbjct: 54   FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEASCVHHDPSRALGD 113

Query: 1300 LTGIKKHFSRKHGXXXXXXXXXXXKYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFIT 1121
            LTGIKKHF RKHG           +YAVQSDWKAHSKTCGTREY+CDCGTLFSRRDSFIT
Sbjct: 114  LTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFIT 173

Query: 1120 HRAFCDALAEESARAINTNP-LISSQS----GTSTQH----MNVQQQIQFNM-HDFPANP 971
            HRAFCDALAEESARAI  NP L+SSQ+     +ST H    M++QQQ QFN  HDF A  
Sbjct: 174  HRAFCDALAEESARAITGNPVLLSSQAAAGPSSSTPHSHSQMSLQQQQQFNSNHDFHAFQ 233

Query: 970  VKIEQQQHQYVRSEVPQWLASSQPTLGDFSSSMLCARLEHEFSQSQQASSTHENSNLNPT 791
            +K EQQ        VP WL+S        SSS+   RL+H+F+Q+ Q  + H+  N NP 
Sbjct: 234  MKKEQQSFSIRSEVVPPWLSS--------SSSLFPTRLDHDFTQTTQDLALHDIQNPNPN 285

Query: 790  PS----FPTYHPSTSPHMSATALLQKAAQMGATISK--------PAMLTRPQHAHMSAXX 647
            PS     P YHP+ SPHMSATALLQKAAQMGAT+SK        P  + RP  AH+SA  
Sbjct: 286  PSLGPTLPPYHPTLSPHMSATALLQKAAQMGATMSKTTGGSGASPPAMIRPHQAHVSA-- 343

Query: 646  XXXXXXXXXXXXXXXXXXXXXXXGFMHSLTAFGNK---------STTPASGFMGQLSAP- 497
                                   GF+  L  FGNK         +   A+G  G   +P 
Sbjct: 344  -DHSCNNTTGFGLNLSSREEMGGGFVQGLAPFGNKAAAVPSAAAAAAAATGPGGGAPSPS 402

Query: 496  -XXXXXXXXXXXXXXXXXXXXXXXXXGMLNSKSDRN-----LSKKQ--KTFEXXXXXXXX 341
                                      GMLNS+ + N     L  K    T          
Sbjct: 403  LLLQDMMTSLSSATGFDSSSFEDAFGGMLNSRKNGNNLHQTLPSKSTTTTATTHHSSGGA 462

Query: 340  XXXGLTRDFLSLGAFPHRDYLNIPGLDQCMGSSIPYEQQNQNQKPWQG 197
               GLTRDFL L A  H D L+I GL  CM +S P++ QNQ QKPWQG
Sbjct: 463  GNDGLTRDFLGLRALSHSDILSIAGLGTCMNTS-PHDHQNQTQKPWQG 509


>ref|XP_003529728.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]
          Length = 498

 Score =  423 bits (1087), Expect = e-115
 Identities = 256/512 (50%), Positives = 291/512 (56%), Gaps = 15/512 (2%)
 Frame = -3

Query: 1687 QQHSVLDENMSNLTCTSDEPLASSGSR-----SFASPHQTQTSAVKRKRNLPGNPDPDAE 1523
            QQ  +++ENMSNLT  S E  ASSG+R     S+ +P  TQ    K+KRNLPGNPDPDAE
Sbjct: 13   QQQQIVEENMSNLTSASGEASASSGNRTEIGTSYMAPPPTQIQPPKKKRNLPGNPDPDAE 72

Query: 1522 VIALSPKTLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPE 1343
            VIALSPK+L+ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPE
Sbjct: 73   VIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPE 132

Query: 1342 VSCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXKYAVQSDWKAHSKTCGTREYKC 1163
             SCVHH+PSRALGDLTGIKKHF RKHG           KYAVQSDWKAHSKTCGTREY+C
Sbjct: 133  PSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRC 192

Query: 1162 DCGTLFSRRDSFITHRAFCDALAEESARAINTNPLI-SSQSGTSTQHMNVQQQIQFNMHD 986
            DCGTLFSRRDSFITHRAFCDALAEESARAI  NPL+   Q  +S+ HM+   Q QFN  +
Sbjct: 193  DCGTLFSRRDSFITHRAFCDALAEESARAI-ANPLLPPQQQQSSSSHMST-LQTQFNPQN 250

Query: 985  FPANPVKIEQQQHQYVRSEVPQWLASSQPTLGDFSSSMLCARLEHEFSQSQQASSTH-EN 809
              A P+K           E+P WL      + D   S          S S   S  H EN
Sbjct: 251  LHAFPLK----------KEMPPWLGPPATVVVDHHLSS---------SSSIMFSPPHQEN 291

Query: 808  SNLNPTPSFPTYHPSTSPHMSATALLQKAAQMGATISK----PAMLTRPQHAHMS--AXX 647
             N +  P+   Y    +PHMSATALLQKAAQMGAT+S+    PAM     HAH+S     
Sbjct: 292  PNPSLGPTLAAYQTVPNPHMSATALLQKAAQMGATMSRSGSTPAMTGPHHHAHVSHFGLN 351

Query: 646  XXXXXXXXXXXXXXXXXXXXXXXGFMHSLTAFGNKSTTPASGFMGQLSAPXXXXXXXXXX 467
                                    F H L +        A+      SAP          
Sbjct: 352  LSSREDTTTTTPSTTTTNANTATVFSHGLLSSSPLGNKAAAAAAVSSSAPSLLHDVINSF 411

Query: 466  XXXXXXXXXXXXXXXGMLNSK--SDRNLSKKQKTFEXXXXXXXXXXXGLTRDFLSLGAFP 293
                              + K   D NL       +           GLTRDFL L    
Sbjct: 412  SSPSAFEGTPFEDAFIQSSKKLDDDHNLYLHDTFSKTSGAAGNNINEGLTRDFLGLRPLS 471

Query: 292  HRDYLNIPGLDQCMGSSIPYEQQNQNQKPWQG 197
            H D L I G+  C+     ++QQNQ+QKPWQG
Sbjct: 472  HADILTIAGIGNCI-----HDQQNQSQKPWQG 498


>ref|XP_002527396.1| nucleic acid binding protein, putative [Ricinus communis]
            gi|223533206|gb|EEF34962.1| nucleic acid binding protein,
            putative [Ricinus communis]
          Length = 552

 Score =  411 bits (1057), Expect = e-112
 Identities = 270/568 (47%), Positives = 312/568 (54%), Gaps = 64/568 (11%)
 Frame = -3

Query: 1708 MMSNLKIQQHSVLDENMSNLTCTSDEPLASSGSRS---------FASPHQTQTSA-VKRK 1559
            MM  L   Q    +ENMSNLT  S E   SSG+R+         FA P   Q+    K+K
Sbjct: 1    MMKGLIFHQQQQQEENMSNLTSASGEASVSSGNRNETNYPPQQYFAHPPPPQSQPPAKKK 60

Query: 1558 RNLPGNPDPDAEVIALSPKTLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTS 1379
            RNLPGNPDPDAEVIALSPKTLMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRT+
Sbjct: 61   RNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTN 120

Query: 1378 KEV-RKKVYVCPEVSCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXKYAVQSDWK 1202
            KEV RKKVYVCPE SCVHH+PSRALGDLTGIKKHFSRKHG           +YAVQSDWK
Sbjct: 121  KEVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWK 180

Query: 1201 AHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARAIN--TNPLI--SSQS--- 1043
            AHSKTCGTREY+CDCGTLFSRRDSFITHRAFCDALAEESARAI    NPL+  S+QS   
Sbjct: 181  AHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITDAPNPLLIPSNQSAAA 240

Query: 1042 -GTSTQH---MNVQQQIQFNMHDFPANPVKIEQQQHQ---YVRSEVPQWLASSQPTLGDF 884
              ++TQ+   ++   Q+  +  +  A  +K EQQ       +R E+P WLA     LG  
Sbjct: 241  ASSATQNPISLHQVPQLMNSHQNLHAFSLKKEQQTFSTTTALRPELPPWLACPPGVLGSG 300

Query: 883  SS------SMLCARLEHEFSQS------QQASSTHENSNLNPTPSFPTYHPSTSPHMSAT 740
            S             +EH    S      Q   S++ N +L PT       P  SPHMSAT
Sbjct: 301  SGHGPGPPHHQQTPIEHHHLSSSILNFQQDLGSSNPNPSLGPTLPHYQAAPPPSPHMSAT 360

Query: 739  ALLQKAAQMGATISK----PAMLTRP---QHAHMSA---------XXXXXXXXXXXXXXX 608
            ALLQKAAQMGAT+S       ++ RP   QH H  A                        
Sbjct: 361  ALLQKAAQMGATMSSKTTTAGLMMRPHQHQHQHEQAHVTADSTNNNANTTGFVLNLSSRD 420

Query: 607  XXXXXXXXXXGFMHSLTAFG----------NKSTTPASGFMGQLSAPXXXXXXXXXXXXX 458
                       F+HSL A G          N  ++ ASGF G  +A              
Sbjct: 421  QELAASGGGGSFVHSLQAAGANGVLLQEMMNSLSSAASGFEGTATA-------------- 466

Query: 457  XXXXXXXXXXXXGMLNSKSDRNLSKKQKTFEXXXXXXXXXXXGLTRDFLSLGAFPHRDYL 278
                         + NSK D N      +              LTRDFL L AF H D L
Sbjct: 467  TATSFEDAFVSGVLNNSKKDGNF--LDGSLSKATTNGNNGGEDLTRDFLGLRAFSHSDIL 524

Query: 277  NI-PGLDQCMGSSIPYEQQNQNQKPWQG 197
            N+  GL  C+ +S   +QQNQ+QK W+G
Sbjct: 525  NMAAGLGNCVNTSHEQQQQNQSQKTWRG 552