BLASTX nr result

ID: Cimicifuga21_contig00003884 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00003884
         (477 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270842.1| PREDICTED: uncharacterized protein LOC100261...   100   2e-19
emb|CAN81100.1| hypothetical protein VITISV_017742 [Vitis vinifera]    99   5e-19
ref|NP_189339.1| uncharacterized protein [Arabidopsis thaliana] ...    89   3e-16
ref|XP_002877012.1| hypothetical protein ARALYDRAFT_322830 [Arab...    89   3e-16
ref|XP_002298636.1| predicted protein [Populus trichocarpa] gi|2...    85   7e-15

>ref|XP_002270842.1| PREDICTED: uncharacterized protein LOC100261671 [Vitis vinifera]
          Length = 140

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 53/93 (56%), Positives = 59/93 (63%)
 Frame = -1

Query: 471 SLLFFPWFTRNLPLIFT*ILSSIAMTDWAPILVGVVLFILLSPGLLFQLPGHSRHVDFGG 292
           SL++F      L  I   +     M DWAP+LVGVVLF+LLSPGLLFQLPGH RHVDFGG
Sbjct: 48  SLIYFTLICIFLLAIGVHMCDIFEMADWAPVLVGVVLFVLLSPGLLFQLPGHYRHVDFGG 107

Query: 291 MKTNGKSXXXXXXXXXXXXXXXIMAIRLHIYTG 193
           MKTNGKS               IMA+ LHIYTG
Sbjct: 108 MKTNGKSIAVHTLIFVAIFAVLIMALHLHIYTG 140


>emb|CAN81100.1| hypothetical protein VITISV_017742 [Vitis vinifera]
          Length = 69

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 48/69 (69%), Positives = 51/69 (73%)
 Frame = -1

Query: 399 MTDWAPILVGVVLFILLSPGLLFQLPGHSRHVDFGGMKTNGKSXXXXXXXXXXXXXXXIM 220
           M DWAP+LVGVVLF+LLSPGLLFQLPGH RHVDFGGMKTNGKS               IM
Sbjct: 1   MADWAPVLVGVVLFVLLSPGLLFQLPGHYRHVDFGGMKTNGKSIAVHTLIFVAIFAVLIM 60

Query: 219 AIRLHIYTG 193
           A+ LHIYTG
Sbjct: 61  ALHLHIYTG 69


>ref|NP_189339.1| uncharacterized protein [Arabidopsis thaliana]
           gi|332643737|gb|AEE77258.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 142

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 43/74 (58%), Positives = 53/74 (71%)
 Frame = -1

Query: 414 LSSIAMTDWAPILVGVVLFILLSPGLLFQLPGHSRHVDFGGMKTNGKSXXXXXXXXXXXX 235
           L S +M DWAP+LVGVVLF++LSPGLLF LPG++R VDFGG+KTNGK+            
Sbjct: 69  LFSTSMADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIY 128

Query: 234 XXXIMAIRLHIYTG 193
              I+A+ LHIYTG
Sbjct: 129 TILILALNLHIYTG 142



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 33/91 (36%), Positives = 49/91 (53%)
 Frame = -1

Query: 399 MTDWAPILVGVVLFILLSPGLLFQLPGHSRHVDFGGMKTNGKSXXXXXXXXXXXXXXXIM 220
           M DW P+ V V LF+LL+PGLL Q+PG  R V+FG  +T+G S               ++
Sbjct: 1   MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 219 AIRLHIYTG*NIKPTPFSVL*DVRVSLPLFI 127
           A+++HI    N+  T  +    V V + LF+
Sbjct: 61  ALQIHIC---NLFSTSMADWAPVLVGVVLFV 88


>ref|XP_002877012.1| hypothetical protein ARALYDRAFT_322830 [Arabidopsis lyrata subsp.
           lyrata] gi|297322850|gb|EFH53271.1| hypothetical protein
           ARALYDRAFT_322830 [Arabidopsis lyrata subsp. lyrata]
          Length = 142

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 43/74 (58%), Positives = 53/74 (71%)
 Frame = -1

Query: 414 LSSIAMTDWAPILVGVVLFILLSPGLLFQLPGHSRHVDFGGMKTNGKSXXXXXXXXXXXX 235
           L S +M DWAP+LVGVVLF++LSPGLLF LPG++R VDFGG+KTNGK+            
Sbjct: 69  LFSTSMADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIY 128

Query: 234 XXXIMAIRLHIYTG 193
              I+A+ LHIYTG
Sbjct: 129 SILILALNLHIYTG 142



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 33/91 (36%), Positives = 49/91 (53%)
 Frame = -1

Query: 399 MTDWAPILVGVVLFILLSPGLLFQLPGHSRHVDFGGMKTNGKSXXXXXXXXXXXXXXXIM 220
           M DW P+ V V LF+LL+PGLL Q+PG  R V+FG  +T+G S               ++
Sbjct: 1   MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 219 AIRLHIYTG*NIKPTPFSVL*DVRVSLPLFI 127
           A+++HI    N+  T  +    V V + LF+
Sbjct: 61  ALQIHIC---NLFSTSMADWAPVLVGVVLFV 88


>ref|XP_002298636.1| predicted protein [Populus trichocarpa] gi|222845894|gb|EEE83441.1|
           predicted protein [Populus trichocarpa]
          Length = 69

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 37/69 (53%), Positives = 49/69 (71%)
 Frame = -1

Query: 399 MTDWAPILVGVVLFILLSPGLLFQLPGHSRHVDFGGMKTNGKSXXXXXXXXXXXXXXXIM 220
           M DW P+++GVVLF+LL PGLLFQLPG+++HVDFG +KTNGK+               I+
Sbjct: 1   MADWGPVVIGVVLFVLLQPGLLFQLPGNNKHVDFGSLKTNGKAIAVHTLIFFTAYAILIL 60

Query: 219 AIRLHIYTG 193
           A+ +HIYTG
Sbjct: 61  AVHVHIYTG 69


Top