BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00003854
         (707 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrh...   244   2e-62
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   242   5e-62
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   242   5e-62
gb|ABG29322.1| DNA-directed RNA polymerase II 135 kDa polypeptid...   241   1e-61
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              239   4e-61

>gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrhinum majus]
          Length = 821

 Score =  244 bits (622), Expect = 2e-62
 Identities = 112/133 (84%), Positives = 123/133 (92%)
 Frame = +3

Query: 3    LTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLYERLFTL 182
            LTHMAEDK+KFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHGAAANL+ERLFTL
Sbjct: 689  LTHMAEDKIKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 748

Query: 183  SDLSQMHICSKCSNISNVIQRPVPGGSKIRGPYCRFCQSAEDIVKVNVPYGAKLLCQELF 362
            SD SQMH+C KC N++NVIQR V GG KIRGPYCRFC S ED+V++NVPYGAKLLCQELF
Sbjct: 749  SDSSQMHVCRKCQNMANVIQRSVFGGRKIRGPYCRFCDSVEDVVRLNVPYGAKLLCQELF 808

Query: 363  SMGISVKFGTEAC 401
            SMGIS+KF TE C
Sbjct: 809  SMGISLKFDTELC 821


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score =  242 bits (618), Expect = 5e-62
 Identities = 112/133 (84%), Positives = 122/133 (91%)
 Frame = +3

Query: 3    LTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLYERLFTL 182
            L HMAEDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHGA+ANL+ERLFTL
Sbjct: 1071 LIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTL 1130

Query: 183  SDLSQMHICSKCSNISNVIQRPVPGGSKIRGPYCRFCQSAEDIVKVNVPYGAKLLCQELF 362
            SD SQMHIC KC N++NVIQR VPGG KIRGPYCR C+S ++IVKVNVPYGAKLLCQELF
Sbjct: 1131 SDSSQMHICQKCKNVANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNVPYGAKLLCQELF 1190

Query: 363  SMGISVKFGTEAC 401
            SMGIS+KF T  C
Sbjct: 1191 SMGISLKFETRLC 1203


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score =  242 bits (618), Expect = 5e-62
 Identities = 113/131 (86%), Positives = 124/131 (94%)
 Frame = +3

Query: 3    LTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLYERLFTL 182
            LTHM+EDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHGAAANL+ERLFTL
Sbjct: 887  LTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 946

Query: 183  SDLSQMHICSKCSNISNVIQRPVPGGSKIRGPYCRFCQSAEDIVKVNVPYGAKLLCQELF 362
            SD SQMHIC KC+NI+NVIQR VPGG KIRGPYCRFC+S E+IV+VNVPYGAKLL QELF
Sbjct: 947  SDSSQMHICRKCNNIANVIQRAVPGGRKIRGPYCRFCESVEEIVRVNVPYGAKLLAQELF 1006

Query: 363  SMGISVKFGTE 395
            SMGI++KF TE
Sbjct: 1007 SMGITMKFDTE 1017


>gb|ABG29322.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
           [Solanum bulbocastanum]
          Length = 304

 Score =  241 bits (615), Expect = 1e-61
 Identities = 114/133 (85%), Positives = 123/133 (92%)
 Frame = +3

Query: 3   LTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLYERLFTL 182
           L HMAEDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHGAAANL+ERLFTL
Sbjct: 173 LIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 232

Query: 183 SDLSQMHICSKCSNISNVIQRPVPGGSKIRGPYCRFCQSAEDIVKVNVPYGAKLLCQELF 362
           SD SQMHIC KC N++NVIQR  PGG KIRGP+CRFC+S EDIVKV+VPYGAKLLCQELF
Sbjct: 233 SDSSQMHICGKCKNMANVIQRSAPGG-KIRGPFCRFCESVEDIVKVDVPYGAKLLCQELF 291

Query: 363 SMGISVKFGTEAC 401
           SMGIS+KF TE C
Sbjct: 292 SMGISLKFDTEIC 304


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  239 bits (610), Expect = 4e-61
 Identities = 110/133 (82%), Positives = 123/133 (92%)
 Frame = +3

Query: 3    LTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLYERLFTL 182
            L HMAEDKVKFRNTGPVHPLTRQPV+DRKRFGG+KFGEMERDCL+AHGAAANL+ERLFTL
Sbjct: 1088 LIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1147

Query: 183  SDLSQMHICSKCSNISNVIQRPVPGGSKIRGPYCRFCQSAEDIVKVNVPYGAKLLCQELF 362
            SD + MHIC +C NISNVIQR V GG K+RGPYCR+C+S+E+IVKVNVPYGAKLLCQELF
Sbjct: 1148 SDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELF 1207

Query: 363  SMGISVKFGTEAC 401
            SMGIS+KF T+ C
Sbjct: 1208 SMGISLKFETQLC 1220