BLASTX nr result
ID: Cimicifuga21_contig00003839
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00003839
(1448 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI27138.3| unnamed protein product [Vitis vinifera] 172 1e-69
ref|XP_003556575.1| PREDICTED: sacsin-like [Glycine max] 160 1e-65
ref|XP_003533689.1| PREDICTED: sacsin-like [Glycine max] 158 3e-65
ref|XP_002872036.1| zinc finger family protein [Arabidopsis lyra... 162 9e-65
ref|NP_197702.1| C3HC4-type RING finger domain-containing protei... 163 1e-64
>emb|CBI27138.3| unnamed protein product [Vitis vinifera]
Length = 3960
Score = 172 bits (437), Expect(2) = 1e-69
Identities = 80/91 (87%), Positives = 85/91 (93%)
Frame = -2
Query: 1375 VGFNSVYHLTDLPSFVSGKYVVLFDPQGIYLPNVSASNPGKRIEYVSSSAFSLYKDQFFP 1196
VGFNSVYHLTDLPSFVSGKYVVLFDPQG+YLPNVS +NPGKRIEYVSSSA SLYKDQF P
Sbjct: 122 VGFNSVYHLTDLPSFVSGKYVVLFDPQGVYLPNVSTANPGKRIEYVSSSAISLYKDQFLP 181
Query: 1195 YCAFGCDMTKPFTGTLFRFPLRSKDQAAVSK 1103
YCAFGCDM PF+GTLFRFPLR+ DQAA+SK
Sbjct: 182 YCAFGCDMKHPFSGTLFRFPLRNADQAAISK 212
Score = 118 bits (296), Expect(2) = 1e-69
Identities = 54/88 (61%), Positives = 72/88 (81%)
Frame = -3
Query: 1104 KLSRQAYSEDDISSMFAHLFEEGVFTLLFLKNILSVEIYVWNSGEPSPDKLHSCLVNSQN 925
KLSRQAY EDDISSMF L+EEGVF LLFLK++LS+E+Y W++GEP P K++SC V+S N
Sbjct: 212 KLSRQAYLEDDISSMFVQLYEEGVFALLFLKSVLSIEMYTWDAGEPDPRKIYSCTVSSAN 271
Query: 924 EDTVWHRQALPRLANSFNPANNEIDSFN 841
+DTV HRQAL RL+ + + +E+D+F+
Sbjct: 272 DDTVLHRQALLRLSKTISSLKSEMDAFS 299
Score = 93.2 bits (230), Expect(2) = 3e-20
Identities = 43/84 (51%), Positives = 55/84 (65%)
Frame = -2
Query: 1345 DLPSFVSGKYVVLFDPQGIYLPNVSASNPGKRIEYVSSSAFSLYKDQFFPYCAFGCDMTK 1166
D+P+FVSG+ +V+FDP LP +S S+PG RI YV + DQF P+ FGCD+
Sbjct: 998 DIPTFVSGENIVMFDPHACNLPGISPSHPGLRIRYVGRRILEQFPDQFSPFLHFGCDLQN 1057
Query: 1165 PFTGTLFRFPLRSKDQAAVSKALK 1094
PF GTLFRFPLRS A+ S+ K
Sbjct: 1058 PFPGTLFRFPLRSASVASRSQIKK 1081
Score = 32.7 bits (73), Expect(2) = 3e-20
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = -3
Query: 1104 KLSRQAYSEDDISSMFAHLFEEGVFTLLFLKNILSVEIYVWNSGEPSPDKLHSCLVNSQN 925
++ ++ Y+ +D+ S+FA E LLF++N+ ++ I+V +H ++ Q+
Sbjct: 1078 QIKKEGYAPEDVMSLFASFSEVVSEALLFVRNVKTISIFVKEETGCEMQLIHRIVMTEQS 1137
>ref|XP_003556575.1| PREDICTED: sacsin-like [Glycine max]
Length = 4756
Score = 160 bits (405), Expect(2) = 1e-65
Identities = 74/91 (81%), Positives = 81/91 (89%)
Frame = -2
Query: 1375 VGFNSVYHLTDLPSFVSGKYVVLFDPQGIYLPNVSASNPGKRIEYVSSSAFSLYKDQFFP 1196
VGFNSVYHLTDLPSFVS KYVVLFDPQG+YLP VSA+NPGKRI++ SSAFS Y+DQF P
Sbjct: 115 VGFNSVYHLTDLPSFVSHKYVVLFDPQGVYLPRVSAANPGKRIDFTGSSAFSFYRDQFSP 174
Query: 1195 YCAFGCDMTKPFTGTLFRFPLRSKDQAAVSK 1103
YCAFGCDM PF+GTLFRFPLR+ DQAA SK
Sbjct: 175 YCAFGCDMQSPFSGTLFRFPLRNADQAAKSK 205
Score = 117 bits (293), Expect(2) = 1e-65
Identities = 55/87 (63%), Positives = 70/87 (80%)
Frame = -3
Query: 1104 KLSRQAYSEDDISSMFAHLFEEGVFTLLFLKNILSVEIYVWNSGEPSPDKLHSCLVNSQN 925
KLSRQAYS +DISSMF LFEEGV TLLFLK++L +E+Y+W++GEP P K+HSC V+S
Sbjct: 205 KLSRQAYSPEDISSMFVQLFEEGVLTLLFLKSVLCIEMYLWDAGEPEPKKIHSCSVSSVT 264
Query: 924 EDTVWHRQALPRLANSFNPANNEIDSF 844
+DTVWHRQ+L RL+ S N E+D+F
Sbjct: 265 DDTVWHRQSLLRLSKSLNTI-AEVDAF 290
Score = 104 bits (260), Expect(2) = 3e-24
Identities = 49/94 (52%), Positives = 62/94 (65%)
Frame = -2
Query: 1375 VGFNSVYHLTDLPSFVSGKYVVLFDPQGIYLPNVSASNPGKRIEYVSSSAFSLYKDQFFP 1196
+GFN VYH TD+P FVSG+ VV+FDP LP +S S+PG RI++V + DQF P
Sbjct: 1482 LGFNCVYHFTDIPMFVSGENVVMFDPHASNLPGISPSHPGLRIKFVGQQILEQFPDQFSP 1541
Query: 1195 YCAFGCDMTKPFTGTLFRFPLRSKDQAAVSKALK 1094
FGCD+ PF GTLFRFPLR+ A+ S+ K
Sbjct: 1542 LLHFGCDLQHPFPGTLFRFPLRTAGLASRSQIKK 1575
Score = 35.0 bits (79), Expect(2) = 3e-24
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = -3
Query: 1104 KLSRQAYSEDDISSMFAHLFEEGVFTLLFLKNILSVEIYV 985
++ ++AY+ +D+ S+ A E TLLFL+N+ S+ I+V
Sbjct: 1572 QIKKEAYTPEDVRSLLAAFSEVVSETLLFLRNVKSISIFV 1611
>ref|XP_003533689.1| PREDICTED: sacsin-like [Glycine max]
Length = 4760
Score = 158 bits (400), Expect(2) = 3e-65
Identities = 73/91 (80%), Positives = 80/91 (87%)
Frame = -2
Query: 1375 VGFNSVYHLTDLPSFVSGKYVVLFDPQGIYLPNVSASNPGKRIEYVSSSAFSLYKDQFFP 1196
VGFNSVYHLTDLPSFVSGKYVVLFDPQG+YLP VSA+NPGKRI++ SSA S Y+DQF P
Sbjct: 115 VGFNSVYHLTDLPSFVSGKYVVLFDPQGVYLPRVSAANPGKRIDFTGSSALSFYRDQFSP 174
Query: 1195 YCAFGCDMTKPFTGTLFRFPLRSKDQAAVSK 1103
YCAFGCDM PF+GTLFRFPLR+ QAA SK
Sbjct: 175 YCAFGCDMQSPFSGTLFRFPLRNAYQAATSK 205
Score = 118 bits (295), Expect(2) = 3e-65
Identities = 55/87 (63%), Positives = 70/87 (80%)
Frame = -3
Query: 1104 KLSRQAYSEDDISSMFAHLFEEGVFTLLFLKNILSVEIYVWNSGEPSPDKLHSCLVNSQN 925
KLSRQAYS +DISSMF L+EEGV TLLFLK++L +E+Y+W++GEP P K+HSC V+S
Sbjct: 205 KLSRQAYSPEDISSMFVQLYEEGVLTLLFLKSVLCIEMYLWDAGEPEPKKIHSCSVSSVT 264
Query: 924 EDTVWHRQALPRLANSFNPANNEIDSF 844
+DTVWHRQAL RL+ S N E+D+F
Sbjct: 265 DDTVWHRQALLRLSKSLN-TTAEVDAF 290
Score = 104 bits (259), Expect(2) = 7e-25
Identities = 49/94 (52%), Positives = 62/94 (65%)
Frame = -2
Query: 1375 VGFNSVYHLTDLPSFVSGKYVVLFDPQGIYLPNVSASNPGKRIEYVSSSAFSLYKDQFFP 1196
+GFN VYH TD+P FVSG+ VV+FDP LP +S S+PG RI++V + DQF P
Sbjct: 1483 LGFNCVYHFTDIPMFVSGENVVMFDPHASNLPGISPSHPGLRIKFVGRQILEQFPDQFSP 1542
Query: 1195 YCAFGCDMTKPFTGTLFRFPLRSKDQAAVSKALK 1094
FGCD+ PF GTLFRFPLR+ A+ S+ K
Sbjct: 1543 LLHFGCDLQHPFPGTLFRFPLRTAGVASRSQIKK 1576
Score = 37.4 bits (85), Expect(2) = 7e-25
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = -3
Query: 1104 KLSRQAYSEDDISSMFAHLFEEGVFTLLFLKNILSVEIYV 985
++ ++AY+ +D+ S+FA E TLLFL+N+ S+ I+V
Sbjct: 1573 QIKKEAYTPEDVRSLFAAFSEVVSETLLFLRNVKSISIFV 1612
>ref|XP_002872036.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317873|gb|EFH48295.1| zinc finger family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 4711
Score = 162 bits (411), Expect(2) = 9e-65
Identities = 75/98 (76%), Positives = 84/98 (85%)
Frame = -2
Query: 1375 VGFNSVYHLTDLPSFVSGKYVVLFDPQGIYLPNVSASNPGKRIEYVSSSAFSLYKDQFFP 1196
VGFNSVYHLTD+PSFVSGKYVVLFDPQG YLPN+SA+NPGKRI+YV SSA S YKDQF P
Sbjct: 111 VGFNSVYHLTDIPSFVSGKYVVLFDPQGAYLPNISAANPGKRIDYVGSSALSQYKDQFLP 170
Query: 1195 YCAFGCDMTKPFTGTLFRFPLRSKDQAAVSKALKASIF 1082
YCAFGCDM PF GTLFRFPLR+ +QAA S+ + + F
Sbjct: 171 YCAFGCDMRSPFHGTLFRFPLRNPEQAASSRLSRQAYF 208
Score = 112 bits (280), Expect(2) = 9e-65
Identities = 52/87 (59%), Positives = 68/87 (78%)
Frame = -3
Query: 1104 KLSRQAYSEDDISSMFAHLFEEGVFTLLFLKNILSVEIYVWNSGEPSPDKLHSCLVNSQN 925
+LSRQAY EDDIS MF LFEEGVF+LLFLK +LS+E+Y W+ G+P P KL+SC V+S +
Sbjct: 201 RLSRQAYFEDDISLMFDQLFEEGVFSLLFLKCVLSIEMYTWDDGDPEPKKLYSCSVSSPD 260
Query: 924 EDTVWHRQALPRLANSFNPANNEIDSF 844
DTVWHRQA+ RL+ + + E+D+F
Sbjct: 261 NDTVWHRQAVLRLSKTSISGDREMDAF 287
Score = 100 bits (249), Expect(2) = 5e-21
Identities = 45/94 (47%), Positives = 61/94 (64%)
Frame = -2
Query: 1375 VGFNSVYHLTDLPSFVSGKYVVLFDPQGIYLPNVSASNPGKRIEYVSSSAFSLYKDQFFP 1196
+GFN VYH TD+P FVSG+ +V+FDP +LP +S ++PG RI++ + + DQF P
Sbjct: 1483 LGFNCVYHFTDIPGFVSGENIVMFDPHANHLPGISPTHPGLRIKFAGRNILDQFPDQFAP 1542
Query: 1195 YCAFGCDMTKPFTGTLFRFPLRSKDQAAVSKALK 1094
+ FGCD+ F GTLFRFPLR+ A S K
Sbjct: 1543 FLHFGCDLEHTFPGTLFRFPLRNASVAPRSHIKK 1576
Score = 28.1 bits (61), Expect(2) = 5e-21
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -3
Query: 1101 LSRQAYSEDDISSMFAHLFEEGVFTLLFLKNILSVEIYVWNSGEPSPDKLHS-CLVNSQN 925
+ ++ Y+ +D+ S+F L+FL+N+ +V I+ LH C ++
Sbjct: 1574 IKKETYASEDVLSLFTSFSGVVSEALVFLRNVKTVSIFTKEGAGHEMQLLHRVCKDHNVG 1633
Query: 924 EDT 916
+DT
Sbjct: 1634 QDT 1636
>ref|NP_197702.1| C3HC4-type RING finger domain-containing protein [Arabidopsis
thaliana] gi|9759369|dbj|BAB09828.1| unnamed protein
product [Arabidopsis thaliana]
gi|332005740|gb|AED93123.1| C3HC4-type RING finger
domain-containing protein [Arabidopsis thaliana]
Length = 4706
Score = 163 bits (413), Expect(2) = 1e-64
Identities = 75/98 (76%), Positives = 84/98 (85%)
Frame = -2
Query: 1375 VGFNSVYHLTDLPSFVSGKYVVLFDPQGIYLPNVSASNPGKRIEYVSSSAFSLYKDQFFP 1196
VGFNSVYHLTD+PSFVSGKYVVLFDPQG YLPN+SA+NPGKRI+YV SSA S YKDQF P
Sbjct: 111 VGFNSVYHLTDIPSFVSGKYVVLFDPQGAYLPNISAANPGKRIDYVGSSALSQYKDQFLP 170
Query: 1195 YCAFGCDMTKPFTGTLFRFPLRSKDQAAVSKALKASIF 1082
YCAFGCDM PF GTLFRFPLR+ +QAA S+ + + F
Sbjct: 171 YCAFGCDMRSPFNGTLFRFPLRNTEQAASSRLSRQAYF 208
Score = 111 bits (277), Expect(2) = 1e-64
Identities = 52/87 (59%), Positives = 67/87 (77%)
Frame = -3
Query: 1104 KLSRQAYSEDDISSMFAHLFEEGVFTLLFLKNILSVEIYVWNSGEPSPDKLHSCLVNSQN 925
+LSRQAY EDDIS MF LFEEGVF+LLFLK +LS+E+Y W+ G+ P KL+SC V+S N
Sbjct: 201 RLSRQAYFEDDISLMFDQLFEEGVFSLLFLKCVLSIEMYTWDDGDSEPKKLYSCSVSSPN 260
Query: 924 EDTVWHRQALPRLANSFNPANNEIDSF 844
DTVWHRQA+ RL+ + + E+D+F
Sbjct: 261 NDTVWHRQAVLRLSKTSISGDREMDAF 287
Score = 99.4 bits (246), Expect(2) = 1e-20
Identities = 45/94 (47%), Positives = 60/94 (63%)
Frame = -2
Query: 1375 VGFNSVYHLTDLPSFVSGKYVVLFDPQGIYLPNVSASNPGKRIEYVSSSAFSLYKDQFFP 1196
+GFN VYH TD+P FVSG+ +V+FDP +LP +S ++PG RI++ + DQF P
Sbjct: 1483 LGFNCVYHFTDIPGFVSGENIVMFDPHANHLPGISPTHPGLRIKFAGRYILDQFPDQFAP 1542
Query: 1195 YCAFGCDMTKPFTGTLFRFPLRSKDQAAVSKALK 1094
+ FGCD+ F GTLFRFPLR+ A S K
Sbjct: 1543 FLHFGCDLEHTFPGTLFRFPLRNASVAPRSHIKK 1576
Score = 28.1 bits (61), Expect(2) = 1e-20
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -3
Query: 1101 LSRQAYSEDDISSMFAHLFEEGVFTLLFLKNILSVEIYVWNSGEPSPDKLHS-CLVNSQN 925
+ ++ Y+ +D+ S+F L+FL+N+ +V I+ LH C ++
Sbjct: 1574 IKKETYAPEDVLSLFTSFSGVVSEALIFLRNVKTVSIFTKEGAGHEMQLLHRVCKDHNVG 1633
Query: 924 EDT 916
+DT
Sbjct: 1634 QDT 1636