BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00003802
         (1200 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF30317.1|AC018907_17 hypothetical protein [Arabidopsis thal...   166   8e-39
ref|NP_566277.2| F-box/kelch-repeat protein [Arabidopsis thalian...   166   8e-39
ref|XP_002882457.1| F-box family protein [Arabidopsis lyrata sub...   164   5e-38
ref|XP_003610528.1| F-box family protein [Medicago truncatula] g...   161   3e-37
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...   156   1e-35

>gb|AAF30317.1|AC018907_17 hypothetical protein [Arabidopsis thaliana]
            gi|21536665|gb|AAM60997.1| unknown [Arabidopsis thaliana]
          Length = 416

 Score =  166 bits (421), Expect = 8e-39
 Identities = 135/397 (34%), Positives = 200/397 (50%), Gaps = 45/397 (11%)
 Frame = +2

Query: 35   LPDEVIVEILARLPAKSLVRFRCVRKLWYNLISDSDFIKTHLNRAIERD---SLNLFLIS 205
            LP E+I EIL RLPAKS+ RFRCV KL+  L SD  F K HL+  +  +   SL+  LI 
Sbjct: 25   LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 84

Query: 206  KSDGWRWLKGMGFNRLVSKFNSTPSLFNKHNYCVEGDSFDKAVEIINPLGTSLFDPR--- 376
             S     L  + FN +        ++  +HNY ++ D    +  I N +G  L+D R   
Sbjct: 85   SSHN---LYSLDFNSIGDGIRDLAAV--EHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVM 139

Query: 377  --------------ILGSCHGLVCFGHGEN-ICLLNPSTGEYKLI--KFTKKL------D 487
                          I+GS +GLVC   GE  + L NP+TG+ K +   F  K       +
Sbjct: 140  LKLNAKSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDN 199

Query: 488  LGIYGFGYDPTDEDYKLVEVAYCSE----ITVYSLHDTSCS--TSLNNPYDCFSTKEGVY 649
               YGFG+D   +DYKLV++   SE     +VYSL   S     +LN  ++  S   GV+
Sbjct: 200  FQTYGFGFDGLTDDYKLVKLVATSEDILDASVYSLKADSWRRICNLNYEHNDGSYTSGVH 259

Query: 650  LNGALHWL-GSVKYKSTVCISFDIGDKIVQEVPLPDNTDG----YESITLGVLGGQLCIS 814
             NGA+HW+    ++   V ++FDI  +  +E+P+PD  +     + +  +G L G+LC+ 
Sbjct: 260  FNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVV 319

Query: 815  RDSAEC--EIWVMRSYGVSDSWSKLFSIRVRYSSPELWPLCFAKNG-EVILKDGKTLVSY 985
                +   +IWVM  YG + SWS+   IR+      + PLC  KN  EV+L+    LV Y
Sbjct: 320  NSCYDVHDDIWVMSEYGEAKSWSR---IRINLLYRSMKPLCSTKNDEEVLLELDGDLVLY 376

Query: 986  DPKQKTARNLEIHGI--VDWTKINSIVTHVGSLVRPD 1090
            + +   + NL I G+   D  + N   T+V SL+ P+
Sbjct: 377  NFETNASSNLGICGVKLSDGFEAN---TYVESLISPN 410


>ref|NP_566277.2| F-box/kelch-repeat protein [Arabidopsis thaliana]
            gi|75151183|sp|Q8GXC7.1|FBK50_ARATH RecName:
            Full=F-box/kelch-repeat protein At3g06240
            gi|26451648|dbj|BAC42921.1| unknown protein [Arabidopsis
            thaliana] gi|29824145|gb|AAP04033.1| putative F-box
            protein family [Arabidopsis thaliana]
            gi|332640843|gb|AEE74364.1| F-box/kelch-repeat protein
            [Arabidopsis thaliana]
          Length = 427

 Score =  166 bits (421), Expect = 8e-39
 Identities = 135/397 (34%), Positives = 200/397 (50%), Gaps = 45/397 (11%)
 Frame = +2

Query: 35   LPDEVIVEILARLPAKSLVRFRCVRKLWYNLISDSDFIKTHLNRAIERD---SLNLFLIS 205
            LP E+I EIL RLPAKS+ RFRCV KL+  L SD  F K HL+  +  +   SL+  LI 
Sbjct: 36   LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 95

Query: 206  KSDGWRWLKGMGFNRLVSKFNSTPSLFNKHNYCVEGDSFDKAVEIINPLGTSLFDPR--- 376
             S     L  + FN +        ++  +HNY ++ D    +  I N +G  L+D R   
Sbjct: 96   SSHN---LYSLDFNSIGDGIRDLAAV--EHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVM 150

Query: 377  --------------ILGSCHGLVCFGHGEN-ICLLNPSTGEYKLI--KFTKKL------D 487
                          I+GS +GLVC   GE  + L NP+TG+ K +   F  K       +
Sbjct: 151  LKLNAKSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDN 210

Query: 488  LGIYGFGYDPTDEDYKLVEVAYCSE----ITVYSLHDTSCS--TSLNNPYDCFSTKEGVY 649
               YGFG+D   +DYKLV++   SE     +VYSL   S     +LN  ++  S   GV+
Sbjct: 211  FQTYGFGFDGLTDDYKLVKLVATSEDILDASVYSLKADSWRRICNLNYEHNDGSYTSGVH 270

Query: 650  LNGALHWL-GSVKYKSTVCISFDIGDKIVQEVPLPDNTDG----YESITLGVLGGQLCIS 814
             NGA+HW+    ++   V ++FDI  +  +E+P+PD  +     + +  +G L G+LC+ 
Sbjct: 271  FNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVV 330

Query: 815  RDSAEC--EIWVMRSYGVSDSWSKLFSIRVRYSSPELWPLCFAKNG-EVILKDGKTLVSY 985
                +   +IWVM  YG + SWS+   IR+      + PLC  KN  EV+L+    LV Y
Sbjct: 331  NSCYDVHDDIWVMSEYGEAKSWSR---IRINLLYRSMKPLCSTKNDEEVLLELDGDLVLY 387

Query: 986  DPKQKTARNLEIHGI--VDWTKINSIVTHVGSLVRPD 1090
            + +   + NL I G+   D  + N   T+V SL+ P+
Sbjct: 388  NFETNASSNLGICGVKLSDGFEAN---TYVESLISPN 421


>ref|XP_002882457.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
            gi|297328297|gb|EFH58716.1| F-box family protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 427

 Score =  164 bits (414), Expect = 5e-38
 Identities = 137/396 (34%), Positives = 200/396 (50%), Gaps = 44/396 (11%)
 Frame = +2

Query: 35   LPDEVIVEILARLPAKSLVRFRCVRKLWYNLISDSDFIKTHLNRAIERDSL--------- 187
            LP E+I EIL RLPAKS+ RFRCV KL+Y+L SD  F K HL+  +  D++         
Sbjct: 36   LPPEIITEILLRLPAKSIGRFRCVSKLFYSLSSDPGFAKNHLDLILRNDAVKSLHRKLIV 95

Query: 188  ---NLFLI---SKSDGWRWLKGMGFNRLVSKFNSTPSLFNK--HNYCVEGDSFDKAVEI- 340
               NL+ +   S  DG R L  +  N         PS+F++   NY  E    D+ V + 
Sbjct: 96   SSHNLYSLDFNSIRDGIRDLAAVELN---YPLKDDPSIFSEMIRNYVREHLYDDRRVMLK 152

Query: 341  INPLGTSLFDPRILGSCHGLVCFGHGEN-ICLLNPSTGEYKLIKFT---KKLDLG----- 493
            +N          I+GS +GLVC   GE  + L NP+TG+ K +  T   K ++ G     
Sbjct: 153  LNAKSYRRNWVEIVGSSNGLVCISPGEGAVILYNPTTGDSKRLPETLRPKSVEYGRDNFQ 212

Query: 494  IYGFGYDPTDEDYKLVEVAYCS----EITVYSLHDTSCSTSLNNPY---DCFSTKEGVYL 652
             YGFG+D   +DYK+V++   S    + +VYSL   S     N  Y   D F T  GV+ 
Sbjct: 213  TYGFGFDDLTDDYKVVKLVATSDDILDASVYSLKADSWRRICNLNYEHNDGFYT-SGVHF 271

Query: 653  NGALHWL-GSVKYKSTVCISFDIGDKIVQEVPLP----DNTDGYESITLGVLGGQLCISR 817
            NGA+HW+   + +   V ++FDI  +  +E+PLP    D    + +  +G L G+LC+  
Sbjct: 272  NGAIHWVFAEISHGQRVVVAFDIQTEEFREMPLPVEAEDCHHRFSNFVVGSLNGRLCVVN 331

Query: 818  DSAEC--EIWVMRSYGVSDSWSKLFSIRVRYSSPELWPLCFA-KNGEVILKDGKTLVSYD 988
               E   +IWVM  YG   SWS+   IR+      + PLC   K+ EV+L+    +V Y+
Sbjct: 332  SCYEVHDDIWVMSEYGEVKSWSR---IRINLLYRSMKPLCSTKKDEEVLLELDGDMVLYN 388

Query: 989  PKQKTARNLEIHGI--VDWTKINSIVTHVGSLVRPD 1090
             +   + NL I G+   D  + N   T+V SL+ P+
Sbjct: 389  FETNASSNLGIRGVKLSDGFEAN---TYVESLISPN 421


>ref|XP_003610528.1| F-box family protein [Medicago truncatula]
            gi|355511583|gb|AES92725.1| F-box family protein
            [Medicago truncatula]
          Length = 392

 Score =  161 bits (408), Expect = 3e-37
 Identities = 125/393 (31%), Positives = 192/393 (48%), Gaps = 39/393 (9%)
 Frame = +2

Query: 26   MACLPDEVIVEILARLPAKSLVRFRCVRKLWYNLISDSDFIKTHLNRAIERDSLNLFLIS 205
            MA LP EV  EIL+R+PAK L+R R   K W NLI  +DFI  HL+++  RDS+      
Sbjct: 1    MADLPTEVTTEILSRVPAKPLLRLRSTCKWWRNLIDSTDFIFLHLSKS--RDSV------ 52

Query: 206  KSDGWRWLKGMGFNRLVSKFNSTPSLFNKHNYCVEGD--SFDKAVEIINPLGTSLFDPRI 379
                                     +  +H+   E D  S D+  E+ +PL       ++
Sbjct: 53   ------------------------IILRQHSRLYELDLNSMDRVKELDHPLMCYSNRIKV 88

Query: 380  LGSCHGLVCFGH-GENICLLNPSTGEYKLIK--------------FTKKLDLGIYGFGYD 514
            LGSC+GL+C  +  ++I   NP+  ++++I                T  L   +YGFGYD
Sbjct: 89   LGSCNGLLCICNIADDIAFWNPTIRKHRIIPSEPLIRKETNENNTITTLLAAHVYGFGYD 148

Query: 515  PTDEDYKLVEVAYC---------SEITVYSLHDTSCSTSLNNPYD-CFSTKEGVYLNGAL 664
               +DYKLV ++Y          S + +Y++      T  + PY  C +   GV+++GAL
Sbjct: 149  SATDDYKLVSISYFVDLHNRSFDSHVKIYTMRTDVWKTLPSMPYALCCARTMGVFVSGAL 208

Query: 665  HWLGSVKYKST---VCISFDIGDKIVQEVPLPDNTDGYESITLGVLGGQLCI--SRDSAE 829
            HW+ +   +     + ++FD+  ++ +EV LP   DG   + + +L G LCI  +R S  
Sbjct: 209  HWVVTRDLEPESRDLIVAFDLRFEVFREVALPGTVDGKFDMDVALLRGMLCIIENRGSDG 268

Query: 830  CEIWVMRSYGVSDSWSKLFSI---RVRYSSPELWPLCFAKNGEVIL--KDGKTLVSYDPK 994
             ++WVMR YG  DSW K+F++   R       L PL +++NG+ +L  +D K L  Y+  
Sbjct: 269  FDVWVMREYGSHDSWCKMFTVGQPRDVKLMKSLKPLGYSRNGDKVLFEQDSKKLCWYNLA 328

Query: 995  QKTARNLEIHGIVDWTKINSI--VTHVGSLVRP 1087
             K    + I GI      NSI     VGSLV+P
Sbjct: 329  SKDVSWVRISGIP-----NSIEGTVCVGSLVKP 356


>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 389

 Score =  156 bits (394), Expect = 1e-35
 Identities = 122/366 (33%), Positives = 174/366 (47%), Gaps = 31/366 (8%)
 Frame = +2

Query: 26   MACLPDEVIVEILARLPAKSLVRFRCVRKLWYNLISDSDFIKTHLNRAIERDSLNLFLIS 205
            M+ LP E+I EIL RL AK L+  RCV K W  LI    FI  HLN +IE    NL +I 
Sbjct: 1    MSNLPLEMIAEILCRLTAKKLLCCRCVSKRWRTLIDSPTFIYLHLNHSIE-SPCNLSIIL 59

Query: 206  KSDGWRWLKGMGFNRLVSKFNSTPSLFNKHNYCVEGDSFDKAVEIINPLGTSLFDPRILG 385
            KS                             Y +  D  D    + +PL       +ILG
Sbjct: 60   KS--------------------------SELYSLSFDLLDNIQPLDHPLMCYNHGVKILG 93

Query: 386  SCHGLVCFGH-GENICLLNPSTGEYKLIKFTK----------KLDLGIYGFGYDPTDEDY 532
            SC+GL+C  +  ++I L NPS   ++++ +               + ++GFGYD +++DY
Sbjct: 94   SCNGLLCICNIVDDIALWNPSIRAHRVVPYLPVELKRYFGMCSCRVSVFGFGYDLSNDDY 153

Query: 533  KLVEVA---------YCSEITVYSLHDTSCSTSLNNPY-DCFSTKEGVYLNGALHWLGSV 682
            KLV +A         + SE+ V+SL   S     + PY   +  + G+Y NGALHWL S 
Sbjct: 154  KLVRIAQFGGVDRKSFESEVKVFSLRKNSWRRIADMPYCVLYPGENGIYANGALHWLVSQ 213

Query: 683  KYKSTVC---ISFDIGDKIVQEVPLPDNTDGYESITLGVLGG--QLCISRDSAECEIWVM 847
               STV    ++ D+G +    VP P+  D   ++ +GVL G   L     S   ++WVM
Sbjct: 214  DPDSTVADTIVALDLGVEDYHVVPKPEFVDMNCNMGVGVLQGCLSLLAYARSERVDVWVM 273

Query: 848  RSYGVSDSWSKLFSI---RVRYSSPELWPLCFAKNGEVIL--KDGKTLVSYDPKQKTARN 1012
              Y V +SWSKLFS+    V      L PL ++K+G  +L   D   L  YD K+K   N
Sbjct: 274  EEYMVKESWSKLFSVARLEVIGILRSLKPLAYSKSGNEVLIEHDNVNLFWYDLKRKEVVN 333

Query: 1013 LEIHGI 1030
            + I G+
Sbjct: 334  VWIQGV 339