BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00003778
         (496 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004140601.1| PREDICTED: F-box protein At3g07870-like [Cuc...    98   8e-19
ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi...    97   1e-18
ref|XP_002532277.1| conserved hypothetical protein [Ricinus comm...    92   3e-17
ref|XP_002882554.1| F-box family protein [Arabidopsis lyrata sub...    90   2e-16
ref|NP_566322.1| F-box protein [Arabidopsis thaliana] gi|7526578...    89   5e-16

>ref|XP_004140601.1| PREDICTED: F-box protein At3g07870-like [Cucumis sativus]
           gi|449519392|ref|XP_004166719.1| PREDICTED: F-box
           protein At3g07870-like [Cucumis sativus]
          Length = 375

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
 Frame = +3

Query: 18  VPKYNVNASCNGLLCLSSFSGNNNASILISNPFTRETVQLRWPKVPFEYGNGTCGLGYHP 197
           +P+Y+V  SCNG LCLS    N N  + I NPFTR+ ++L   K  F   +   G+G+HP
Sbjct: 89  MPEYDVVGSCNGFLCLSDSLYNEN--LFIYNPFTRDYLELPKSK-DFSNPDVVYGIGFHP 145

Query: 198 RTKEYKVLAFLYLKG----SNDCHKVMAKVHTLGSSSWRSKGEVPSTIMGQPFNVLVNGA 365
           +TK  K+L  +Y KG        H    +V TLG+S+WRS G +   +        +NG 
Sbjct: 146 QTKRLKILKIVYSKGFRRIQRRFHHSEVQVFTLGTSNWRSIGRIFHHLAQGQSPAAINGR 205

Query: 366 LHWLAHYPKYSKNVVITSFDIGDEEFRVLPIP 461
           LHW++   ++     I SFD+  EEF  +P P
Sbjct: 206 LHWVSLPRRHYVGRTIVSFDLASEEFIDIPKP 237


>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
           gi|147785390|emb|CAN68678.1| hypothetical protein
           VITISV_041941 [Vitis vinifera]
          Length = 409

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 10/158 (6%)
 Frame = +3

Query: 18  VPKYNVNASCNGLLCLSSFSGNNNASILISNPFTRETVQLRWPK-VPFEYGNGTCGLGYH 194
           +P++ V  SCNGLLCL+     +  ++ + NPFTR+  QL  PK + +       G GYH
Sbjct: 119 MPEFEVVGSCNGLLCLADSLFKD--AVYVHNPFTRDFKQL--PKSLQYPDQEVVFGFGYH 174

Query: 195 PRTKEYKVLAFLYLKGSND---------CHKVMAKVHTLGSSSWRSKGEVPSTIMGQPFN 347
           P T+ YKV+  +Y +             C +   +V TLGS +WRS G+V   +   P  
Sbjct: 175 PMTEVYKVVKVVYYRNGYGGFSRFRRITCSQSEVQVLTLGSPTWRSLGKVSYQLDRWPSE 234

Query: 348 VLVNGALHWLAHYPKYSKNVVITSFDIGDEEFRVLPIP 461
            LVNG LHW+    +Y    ++ SFD+ DE+FR +P P
Sbjct: 235 ALVNGRLHWVTRPRRYVTRFIV-SFDLADEQFREIPKP 271


>ref|XP_002532277.1| conserved hypothetical protein [Ricinus communis]
           gi|223528011|gb|EEF30092.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 410

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 13/161 (8%)
 Frame = +3

Query: 18  VPKYNVNASCNGLLCLSSFSGNNNASILISNPFTRETVQLRWPKVPFEYGNGTCGLGYHP 197
           +PK+ V  SCNGLL L         +  I NPFT + ++L  P           G G+H 
Sbjct: 114 IPKFLVIGSCNGLLYL--LDSLQQRANYIYNPFTSDYLELPEPGQVLNQHRVATGFGFHS 171

Query: 198 RTKEYKVLAFLYLKGSND-----------CHKVMAKVHTLGSSS--WRSKGEVPSTIMGQ 338
            TKEYKV+  +Y + + +             +   +V T+G+ S  WRSKGE    ++G 
Sbjct: 172 TTKEYKVVRVVYYRNNKEEGTNFQKRRYSLPRSEVQVLTVGNGSLTWRSKGETSYQLLGN 231

Query: 339 PFNVLVNGALHWLAHYPKYSKNVVITSFDIGDEEFRVLPIP 461
           P +V+VNG LHWL+   +      + SFD+ DE+FR +P P
Sbjct: 232 PSHVVVNGRLHWLSCRYRNQSLRRLISFDLADEQFREVPCP 272


>ref|XP_002882554.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297328394|gb|EFH58813.1| F-box family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 415

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 19/167 (11%)
 Frame = +3

Query: 18  VPKYNVNASCNGLLCLSSFSGNNNASILISNPFTRETVQLRWPKVPFEYGNGTCGLGYHP 197
           +P+++V  SCNGLLCLS    N+  S+ + NPFT  +++L      +       G G+H 
Sbjct: 112 MPEFDVVGSCNGLLCLSDSLYND--SLYLYNPFTTNSLELPECSNKYHDQELVFGFGFHE 169

Query: 198 RTKEYKVLAFLYLKGSNDCHKVM-------------AKVHTLGSS------SWRSKGEVP 320
            TK+YKVL  +Y +GS+  +  +              ++ TL S       SWRS G+ P
Sbjct: 170 MTKDYKVLKIVYFRGSSSSNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAP 229

Query: 321 STIMGQPFNVLVNGALHWLAHYPKYSKNVVITSFDIGDEEFRVLPIP 461
              M +    LVNG LH++    ++  +    SFD+ DEEF+ +P P
Sbjct: 230 YKFMKRSSEALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKP 276


>ref|NP_566322.1| F-box protein [Arabidopsis thaliana]
           gi|75265789|sp|Q9SFC7.1|FB135_ARATH RecName: Full=F-box
           protein At3g07870 gi|6648199|gb|AAF21197.1|AC013483_21
           unknown protein [Arabidopsis thaliana]
           gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21
           [Arabidopsis thaliana] gi|109134141|gb|ABG25068.1|
           At3g07870 [Arabidopsis thaliana]
           gi|332641092|gb|AEE74613.1| F-box protein [Arabidopsis
           thaliana]
          Length = 417

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 19/167 (11%)
 Frame = +3

Query: 18  VPKYNVNASCNGLLCLSSFSGNNNASILISNPFTRETVQLRWPKVPFEYGNGTCGLGYHP 197
           +P+++V  SCNGLLCLS    N+  S+ + NPFT  +++L      +       G G+H 
Sbjct: 114 MPEFDVVGSCNGLLCLSDSLYND--SLYLYNPFTTNSLELPECSNKYHDQELVFGFGFHE 171

Query: 198 RTKEYKVLAFLYLKGSNDCHKVM-------------AKVHTLGSS------SWRSKGEVP 320
            TKEYKVL  +Y +GS+  +  +              ++ TL S       SWRS G+ P
Sbjct: 172 MTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAP 231

Query: 321 STIMGQPFNVLVNGALHWLAHYPKYSKNVVITSFDIGDEEFRVLPIP 461
              + +    LVNG LH++    ++  +    SFD+ DEEF+ +P P
Sbjct: 232 YKFVKRSSEALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKP 278