BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00003699
         (1623 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272755.1| PREDICTED: pentatricopeptide repeat-containi...   631   e-178
ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containi...   587   e-165
ref|XP_002516677.1| pentatricopeptide repeat-containing protein,...   587   e-165
ref|XP_004146221.1| PREDICTED: pentatricopeptide repeat-containi...   584   e-164
ref|XP_003602247.1| Pentatricopeptide repeat-containing protein ...   579   e-163

>ref|XP_002272755.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
            [Vitis vinifera]
          Length = 672

 Score =  631 bits (1627), Expect = e-178
 Identities = 330/524 (62%), Positives = 395/524 (75%), Gaps = 2/524 (0%)
 Frame = -2

Query: 1580 MSLSKLTFLTHLKTLAKXXXXXXXXXXXXXFLSLRFLS-ATTEEVAAEXXXXXXXXRIEP 1404
            M+LSK +F T LKTL K              LSLR LS  T EE AAE        RIEP
Sbjct: 1    MALSKASFFTQLKTLTKPHLHHPPPPPL---LSLRHLSFVTPEEAAAERRRRKRRLRIEP 57

Query: 1403 PLNSLXXXXXXXXXXXXPDIPIVNPNAPKVPEHAQALTGKRLDLHNRILTLIRENDLDEA 1224
            PL+SL               P  NPNAPK+PE   AL+G RL+LHNRIL LIR NDLDEA
Sbjct: 58   PLSSLRHQQAQPRQNPN---PNHNPNAPKLPEPVSALSGNRLNLHNRILGLIRVNDLDEA 114

Query: 1223 SLLTRHSIYSNCKPTIFTCNAVMAALLRQSRYSDLLTLHRFITQANVTANVVTHNLVINV 1044
            +LLTRHSIYSNC+PTIFT N+V+AALLRQSRYSDLL+LHRFITQA V ANVVTHNL+IN 
Sbjct: 115  ALLTRHSIYSNCRPTIFTVNSVLAALLRQSRYSDLLSLHRFITQAGVAANVVTHNLLINA 174

Query: 1043 YCDCRKTDTALEHYKQLINNAAFDPSPTTYRILTKGLVDNSKVDSALELKDDMLEKGLAA 864
            Y DCRKTDTALEHYKQLIN+A F+PSPTTYRIL KG+VDN KV+ ALELK++ML KG AA
Sbjct: 175  YLDCRKTDTALEHYKQLINDAPFNPSPTTYRILIKGIVDNGKVERALELKEEMLGKGFAA 234

Query: 863  DPVVYNNLMLGLVKKGDSDXXXXXXXXXXXXLGFVTDGVVYGNLMKAYFQKGMEKEAMEY 684
            DPVVY+ LMLG V+  ++D            LG V DGVV G+LMK YF +GMEKEAM+ 
Sbjct: 235  DPVVYSYLMLGHVRNLNADGVFELYEELKEKLGDVDDGVVVGSLMKGYFLRGMEKEAMQC 294

Query: 683  YADAVGENSSIRMGAAAYNSVLQALSKYGKFDEALKLFDRIMGEHNPPMKLTVNLGSFNV 504
            YA+AVGE S IRM A A+NSVL ALSK GKFDEA+ LF+R+M E+NPP +L++NLGSFNV
Sbjct: 295  YAEAVGEGSKIRMSAVAFNSVLDALSKNGKFDEAMLLFERMMAEYNPPRRLSMNLGSFNV 354

Query: 503  MAEGFCEQGRFKEAVEVFRKMGEKRCSPDTLSVNHLIEQLCANGMVADAEELFHEMGN-G 327
            M +GFC  GRFK+A+EVFRKMGEKRCS DTLS N+LIEQLC NGM+A+AEEL+ EM N G
Sbjct: 355  MVDGFCTAGRFKDAIEVFRKMGEKRCSADTLSYNNLIEQLCNNGMLAEAEELYGEMANKG 414

Query: 326  ANPDEYTYILLVDACFAQNRADDAACYFGKMVESGLKPNLNAYNKVVDGLIKAGKIDEAN 147
             NPDE+TY+LL+D CF +NR DD A YF KMVE+GL+PNL  Y+K+VDGL+K GKIDEA 
Sbjct: 415  VNPDEFTYVLLMDTCFKENRTDDGAGYFRKMVETGLRPNLAVYSKLVDGLVKVGKIDEAK 474

Query: 146  GVFSQMIERLKLEATDYEIMLRALCEASKLDDVLKLVGGMVEDE 15
              +  M+++LK++   Y+ +++AL E  K DDVLK++G M++D+
Sbjct: 475  SFYDLMVKKLKMDEASYKFLMKALFEVGKHDDVLKMIGDMLDDD 518


>ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
            [Glycine max]
          Length = 631

 Score =  587 bits (1514), Expect = e-165
 Identities = 302/527 (57%), Positives = 386/527 (73%), Gaps = 3/527 (0%)
 Frame = -2

Query: 1580 MSLSKLTFLTHLKTLAKXXXXXXXXXXXXXFLSLRFLS-ATTEEVAAEXXXXXXXXRIEP 1404
            M+LSK TFLTHL+TL+               +S+R LS ++ EE AAE        R+EP
Sbjct: 1    MALSKATFLTHLRTLSNSHRRPSSC------VSIRLLSFSSPEEAAAERRRRKRQLRMEP 54

Query: 1403 PLNSLXXXXXXXXXXXXPDIPIVNPNAPKVPEHAQALTGKRLDLHNRILTLIRENDLDEA 1224
            PL++L            P    +NPN PK+PEH  ALTG RL+LHNRILTLIRENDLDEA
Sbjct: 55   PLSALNRTQTAPKPLQSPYY--LNPNNPKLPEHVSALTGNRLNLHNRILTLIRENDLDEA 112

Query: 1223 SLLTRHSIYSNCKPTIFTCNAVMAALLRQSRYSDLLTLHRFITQANVTANVVTHNLVINV 1044
            +L TRHSIYSNC+PTIFT NAV+AALLRQSRYSDLL+LHRFITQA V  N++THNLV   
Sbjct: 113  ALYTRHSIYSNCRPTIFTINAVLAALLRQSRYSDLLSLHRFITQAGVVPNIITHNLVFQT 172

Query: 1043 YCDCRKTDTALEHYKQLINNAAFDPSPTTYRILTKGLVDNSKVDSALELKDDMLEKGLAA 864
            Y DCRK DTALEHYKQ +N+A  +PSPTTYR+L KGL+DNSK++ A+++K +M  KG A 
Sbjct: 173  YLDCRKPDTALEHYKQFLNDAPMNPSPTTYRVLIKGLIDNSKLERAMDIKTEMDSKGFAP 232

Query: 863  DPVVYNNLMLGLVKKGDSD-XXXXXXXXXXXXLGFVTDGVVYGNLMKAYFQKGMEKEAME 687
            DP+VY+ LMLG  +  D D              G V DG+V+G LMK YF KGMEKEAME
Sbjct: 233  DPLVYHYLMLGHARVSDGDAILRLYEELRERLGGVVQDGIVFGCLMKGYFVKGMEKEAME 292

Query: 686  YYADAVGENSSIRMGAAAYNSVLQALSKYGKFDEALKLFDRIMGEHNPPMKLTVNLGSFN 507
             Y +A+G+    +M A  YNSVL ALSK G+FDEAL+LFDR+M EH P  +L+VNLGSFN
Sbjct: 293  CYEEALGKK---KMSAVGYNSVLDALSKNGRFDEALRLFDRMMKEHEPLKRLSVNLGSFN 349

Query: 506  VMAEGFCEQGRFKEAVEVFRKMGEKRCSPDTLSVNHLIEQLCANGMVADAEELFHEM-GN 330
            V+ +G+C++GRF+EA+EVFRKMGE RCSPDTLS N+LI++LC NG + +AEE++ EM G 
Sbjct: 350  VIVDGYCDEGRFEEAMEVFRKMGEYRCSPDTLSFNNLIDRLCDNGRIVEAEEVYGEMEGK 409

Query: 329  GANPDEYTYILLVDACFAQNRADDAACYFGKMVESGLKPNLNAYNKVVDGLIKAGKIDEA 150
            G +PDE+TY LL+DACF +NRADDAA YF KMV+SGL+PNL  YN++V GL+K GKIDEA
Sbjct: 410  GVSPDEFTYGLLMDACFRENRADDAAAYFRKMVDSGLRPNLAVYNRLVGGLVKVGKIDEA 469

Query: 149  NGVFSQMIERLKLEATDYEIMLRALCEASKLDDVLKLVGGMVEDEKV 9
             G F  M+++LK++ T Y+ +++ L +  +LD++LK+V  +++D  V
Sbjct: 470  KGFFELMVKKLKMDVTSYQFIMKVLSDEGRLDEMLKIVDTLLDDNGV 516


>ref|XP_002516677.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223544172|gb|EEF45696.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 660

 Score =  587 bits (1512), Expect = e-165
 Identities = 304/536 (56%), Positives = 384/536 (71%), Gaps = 10/536 (1%)
 Frame = -2

Query: 1580 MSLSKLTFLTHLKTLAKXXXXXXXXXXXXXF-----LSLRFLS-ATTEEVAAEXXXXXXX 1419
            M+LSKL+FLTHLK +A                    +SLRFLS ++ EE AAE       
Sbjct: 1    MALSKLSFLTHLKYIATHCHRHRHHHHHHHLPPPSIISLRFLSYSSAEEAAAERRRRKRR 60

Query: 1418 XRIEPPLNSLXXXXXXXXXXXXPDIPIVNPNAPKVPEHAQALTGKRLDLHNRILTLIREN 1239
             RIEPPL+SL            P  PI NPN+PK+PE    L+GKR DLHNRILTLIREN
Sbjct: 61   LRIEPPLSSLHRTQQQQQKQQIPK-PIQNPNSPKLPEPISELSGKRHDLHNRILTLIREN 119

Query: 1238 DLDEASLLTRHSIYSNCKPTIFTCNAVMAALLRQSRYSDLLTLHRFITQANVTANVVTHN 1059
            DLDEA+L TRHS+YSNC+PTI+T NAV+ A LRQS+YSDLL+LHRFI QA +  N++THN
Sbjct: 120  DLDEAALFTRHSVYSNCRPTIYTVNAVLNAQLRQSKYSDLLSLHRFIIQAGIAPNIITHN 179

Query: 1058 LVINVYCDCRKTDTALEHYKQLINNAAFDPSPTTYRILTKGLVDNSKVDSALELKDDML- 882
            L+   Y DCRK DTALEHYKQLIN+A F+PSPTTYRIL KGLVDN KVD ALELKD+++ 
Sbjct: 180  LIFQTYLDCRKPDTALEHYKQLINDAPFNPSPTTYRILIKGLVDNGKVDKALELKDEIIG 239

Query: 881  EKGLAADPVVYNNLMLGLVKKGDSD--XXXXXXXXXXXXLGFVTDGVVYGNLMKAYFQKG 708
             +G   DP+VY+ LM+G V+  DS+               G + DGVVYG+LMK YF KG
Sbjct: 240  VRGFTPDPLVYHYLMVGCVRNLDSEGVFRLFDELKEKMGGGVIEDGVVYGDLMKGYFMKG 299

Query: 707  MEKEAMEYYADAVGENSSIRMGAAAYNSVLQALSKYGKFDEALKLFDRIMGEHNPPMKLT 528
            ME EAME Y +AVGENS +RM A AYNSVL AL K GKFD ALKLFDR++ +HNPP  L 
Sbjct: 300  MENEAMECYEEAVGENSKVRMNAVAYNSVLDALCKNGKFDVALKLFDRMLQQHNPPRYLA 359

Query: 527  VNLGSFNVMAEGFCEQGRFKEAVEVFRKMGEKRCSPDTLSVNHLIEQLCANGMVADAEEL 348
            VNLGSFNV+ +G+C QGRF++A++VFRKMG+ RCSPD LS N+LI+QLC NGM+ +AE+L
Sbjct: 360  VNLGSFNVIVDGYCAQGRFEDAIDVFRKMGDYRCSPDVLSYNNLIDQLCKNGMLVEAEDL 419

Query: 347  FHEM-GNGANPDEYTYILLVDACFAQNRADDAACYFGKMVESGLKPNLNAYNKVVDGLIK 171
            + EM G G  PDEYTY LL+D C  ++R DD A YF KMV++GL+PNL  YN++VD L+K
Sbjct: 420  YGEMDGKGVKPDEYTYGLLMDTCLEKDRVDDGAGYFRKMVDTGLRPNLAVYNRLVDKLVK 479

Query: 170  AGKIDEANGVFSQMIERLKLEATDYEIMLRALCEASKLDDVLKLVGGMVEDEKVGL 3
              KIDEA   +  M+++LK++   Y+ M+ AL +  ++D+++K+V GM++DE + L
Sbjct: 480  LKKIDEAKSFYYLMVKKLKMDNASYKFMMEALADNDQMDELIKMVDGMLDDEAIEL 535


>ref|XP_004146221.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
            [Cucumis sativus] gi|449511036|ref|XP_004163845.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At3g49240-like [Cucumis sativus]
          Length = 624

 Score =  584 bits (1505), Expect = e-164
 Identities = 302/528 (57%), Positives = 381/528 (72%), Gaps = 4/528 (0%)
 Frame = -2

Query: 1580 MSLSKLTFLTHLKTLA-KXXXXXXXXXXXXXFLSLRFLS-ATTEEVAAEXXXXXXXXRIE 1407
            M+LSK  F THLKTL                 ++LRFLS A+ EE  AE        RIE
Sbjct: 1    MALSKPAFFTHLKTLTGSHHLLQRQALAPFPIVTLRFLSFASAEEADAERRRRKRRLRIE 60

Query: 1406 PPLNSLXXXXXXXXXXXXPDIPIVNPNAPKVPEHAQALTGKRLDLHNRILTLIRENDLDE 1227
            PPL+S                   NPNAPK+PEH  AL+G RL+LHNRILTLIRENDL+E
Sbjct: 61   PPLSSSSAARPLTQPPRSQTPQ--NPNAPKIPEHISALSGNRLNLHNRILTLIRENDLEE 118

Query: 1226 ASLLTRHSIYSNCKPTIFTCNAVMAALLRQSRYSDLLTLHRFITQANVTANVVTHNLVIN 1047
            A+L TRHSIYSNC+PTIFT NAV+ A LRQS+Y+DLL+LHRFITQA V  N++THNL+  
Sbjct: 119  AALFTRHSIYSNCRPTIFTVNAVLNAQLRQSKYADLLSLHRFITQAGVVPNIITHNLIFQ 178

Query: 1046 VYCDCRKTDTALEHYKQLINNAAFDPSPTTYRILTKGLVDNSKVDSALELKDDMLEKGLA 867
             Y DCRK DTA+EHYKQLIN+A F+PSPTTYRIL KGLVDN+K++ A+ELKD+M+EKG A
Sbjct: 179  TYLDCRKPDTAMEHYKQLINDAPFNPSPTTYRILIKGLVDNNKLERAMELKDEMIEKGFA 238

Query: 866  ADPVVYNNLMLGLVKKGDSDXXXXXXXXXXXXLG-FVTDGVVYGNLMKAYFQKGMEKEAM 690
             DP++Y+ LM G V+  D D            LG  V DGVVYGNLMK YF K ME+EAM
Sbjct: 239  PDPLIYHYLMGGCVRSLDPDGVFKLFEELKEKLGATVEDGVVYGNLMKGYFMKEMEEEAM 298

Query: 689  EYYADAVGENSSIRMGAAAYNSVLQALSKYGKFDEALKLFDRIMGEHNPPMKLTVNLGSF 510
            + Y + VG+NS ++M A AYNSVL AL + GKF EAL LFDR+  EH PP  L VNLGSF
Sbjct: 299  KCYEETVGDNSVVKMSAIAYNSVLDALCRNGKFGEALTLFDRMTKEHRPPRHLAVNLGSF 358

Query: 509  NVMAEGFCEQGRFKEAVEVFRKMGEKRCSPDTLSVNHLIEQLCANGMVADAEELFHEMGN 330
            NVM +G+C +GRFKEA+EVF KMG+ RC PDTLS N+LIEQLC NGM+A+AE L+  M +
Sbjct: 359  NVMVDGYCIEGRFKEAIEVFEKMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEMLYGTMDD 418

Query: 329  -GANPDEYTYILLVDACFAQNRADDAACYFGKMVESGLKPNLNAYNKVVDGLIKAGKIDE 153
             G NPDE+TY LL+D+CF +NRADDAA YF KMV+SGL+PN+  YN +VD L+K GKID+
Sbjct: 419  KGVNPDEFTYGLLMDSCFKKNRADDAAAYFRKMVDSGLRPNIAVYNILVDELVKLGKIDD 478

Query: 152  ANGVFSQMIERLKLEATDYEIMLRALCEASKLDDVLKLVGGMVEDEKV 9
            A   F  M+++LK++A+ Y+ +++AL E+ K+D++L +V  +++D+ +
Sbjct: 479  AKSFFDLMVKKLKMDASSYQFIMKALSESGKMDEILNVVDTLLDDDGI 526


>ref|XP_003602247.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355491295|gb|AES72498.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 704

 Score =  579 bits (1492), Expect = e-163
 Identities = 304/530 (57%), Positives = 373/530 (70%), Gaps = 6/530 (1%)
 Frame = -2

Query: 1580 MSLSKLTFLTHLKTLAKXXXXXXXXXXXXXFLSLRFLS-ATTEEVAAEXXXXXXXXRIEP 1404
            M+LSK TFLTHLKTLA               L  RFLS A+ EE AAE        RIEP
Sbjct: 1    MALSKATFLTHLKTLAHPHLRIRPPYS----LCPRFLSFASPEEAAAERRRRKRQLRIEP 56

Query: 1403 PLNSLXXXXXXXXXXXXPDIP---IVNPNAPKVPEHAQALTGKRLDLHNRILTLIRENDL 1233
            PL++L                    +NP  PK+PEHA ALTG R++LHN ILTLIR+NDL
Sbjct: 57   PLSALNRNQQQSPNPNPKSQSPPYYLNPTDPKLPEHASALTGNRVNLHNTILTLIRQNDL 116

Query: 1232 DEASLLTRHSIYSNCKPTIFTCNAVMAALLRQSRYSDLLTLHRFITQANVTANVVTHNLV 1053
            DEA+L TRHSIYSNC+PTIFT NAV+ AL RQSRYSDLL+LHRFITQA V  N++T+NL+
Sbjct: 117  DEAALYTRHSIYSNCRPTIFTINAVLFALFRQSRYSDLLSLHRFITQAGVVPNIITYNLI 176

Query: 1052 INVYCDCRKTDTALEHYKQLINNAAFDPSPTTYRILTKGLVDNSKVDSALELKDDMLEKG 873
               Y DCRK DTALE++KQ I +A F+PSPTT+RIL KGLVDN+++D A+++KD M   G
Sbjct: 177  FQTYLDCRKPDTALENFKQFIKDAPFNPSPTTFRILIKGLVDNNRLDRAMDIKDQMNASG 236

Query: 872  LAADPVVYNNLMLGLVKKGDSD-XXXXXXXXXXXXLGFVTDGVVYGNLMKAYFQKGMEKE 696
             A DP+VY+ LMLG  +  D D              G V DGVV G LMK YF KGMEKE
Sbjct: 237  FAPDPLVYHYLMLGHARSSDGDGVLRVYEELKEKLGGVVEDGVVLGCLMKGYFLKGMEKE 296

Query: 695  AMEYYADAVGENSSIRMGAAAYNSVLQALSKYGKFDEALKLFDRIMGEHNPPMKLTVNLG 516
            AME Y +   E    +M   AYNSVL AL+K GKFDEA++LFDR++ EHNPP KL VNLG
Sbjct: 297  AMECYQEVFVEGK--KMSDIAYNSVLDALAKNGKFDEAMRLFDRMIKEHNPPAKLAVNLG 354

Query: 515  SFNVMAEGFCEQGRFKEAVEVFRKMGEKRCSPDTLSVNHLIEQLCANGMVADAEELFHEM 336
            SFNVM +G+C +G+FKEA+EVFR MGE RC PDTLS N+LIEQLC NGM+ +AEE++ EM
Sbjct: 355  SFNVMVDGYCAEGKFKEAIEVFRSMGESRCKPDTLSFNNLIEQLCNNGMILEAEEVYGEM 414

Query: 335  -GNGANPDEYTYILLVDACFAQNRADDAACYFGKMVESGLKPNLNAYNKVVDGLIKAGKI 159
             G G NPDEYTY LL+D CF +NR DDAA YF KMVESGL+PNL  YN++VDGL+K GKI
Sbjct: 415  EGKGVNPDEYTYGLLMDTCFKENRPDDAASYFKKMVESGLRPNLAVYNRLVDGLVKVGKI 474

Query: 158  DEANGVFSQMIERLKLEATDYEIMLRALCEASKLDDVLKLVGGMVEDEKV 9
            D+A   F  M+++LK++   Y+ M++ L EA +LDDVL++V  +++D  V
Sbjct: 475  DDAKFFFDLMVKKLKMDVASYQFMMKVLSEAGRLDDVLQIVNMLLDDNGV 524