BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00003623
         (1261 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vi...   502   e-140
ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus ...   473   e-131
ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase A-lik...   470   e-130
ref|XP_004161929.1| PREDICTED: tRNA pseudouridine synthase A-lik...   461   e-127
ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycin...   461   e-127

>ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera]
            gi|297739525|emb|CBI29707.3| unnamed protein product
            [Vitis vinifera]
          Length = 380

 Score =  502 bits (1293), Expect = e-140
 Identities = 253/363 (69%), Positives = 290/363 (79%), Gaps = 10/363 (2%)
 Frame = +1

Query: 148  KRSIDSHIEPPLHKPSKIPKTLN-TXXXXXXXXNQKLMSQNPKIQRYLLAIEYIGTRFSG 324
            K  ++   E P  +PSKI +T + +          K M+QNP++QRYL+A+EYIGTRFSG
Sbjct: 19   KHLLNRRSESP-QRPSKIARTDDLSDGEQQDSVASKTMTQNPRVQRYLVAVEYIGTRFSG 77

Query: 325  SQKQPNCRTVVGVLEEAFHKFVGQPVSVTISSRTDAGVHALSNVCHVDVERISKRKPGEV 504
            SQ+Q NCRTV G L+EAFHKF+GQPVS+  SSRTDAGVHALSNVCHVDVERISKRKPGEV
Sbjct: 78   SQQQLNCRTVAGALQEAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEV 137

Query: 505  LPAHEPGVVRRAVNHFLQKNEGDITVIDVRCVPPDFHSRFKARERTYFYRLLSGPEPLST 684
            LP HEP VVRRAVNHFLQKNEGD+ VIDVRCVPPDFH+R+KARERTYFYRLLSGPEPLS+
Sbjct: 138  LPPHEPAVVRRAVNHFLQKNEGDVMVIDVRCVPPDFHARYKARERTYFYRLLSGPEPLSS 197

Query: 685  FEKDRAWHVQEELDLVSMQKACRVLVGSHDFSSFRAAGCQANSPIRTLDELNVTEVVSTP 864
            FEKDRAWHV E+LDL++MQKACRVLVG HDFSSFRAAGCQA SPIRTLDEL V+EV+ TP
Sbjct: 198  FEKDRAWHVPEDLDLLAMQKACRVLVGCHDFSSFRAAGCQAKSPIRTLDELCVSEVLPTP 257

Query: 865  YFPSIVERVKPISPSSSETELSVKNSIPNSYIA---------EGSSSTFGQQRNHRCFVI 1017
            YFPSI ER +      +    S    +P+S             G+   FG +R HRCF++
Sbjct: 258  YFPSITERAQNNFTEENPLACSNNAEVPDSPSTANHDRLDGFNGAGQGFGVRRRHRCFLV 317

Query: 1018 TARARSFLYHQVRLLVGVLKCVGTGNLSTDDVERILNAKTVTAASPMSPAYGLYLGNVGY 1197
            TARARSFLYHQVRLLVGV+KCVGTG+L+  DVERILNAKTVTAASPM+PA GLYLGNV Y
Sbjct: 318  TARARSFLYHQVRLLVGVIKCVGTGDLTVSDVERILNAKTVTAASPMAPACGLYLGNVNY 377

Query: 1198 ELP 1206
            +LP
Sbjct: 378  DLP 380


>ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223534233|gb|EEF35948.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 372

 Score =  473 bits (1217), Expect = e-131
 Identities = 247/370 (66%), Positives = 288/370 (77%), Gaps = 17/370 (4%)
 Frame = +1

Query: 148  KRSIDSHIEPPLHKPSKIPKTLNTXXXXXXXXNQ--------KLMSQNPKIQRYLLAIEY 303
            K S+D+      ++PSKI KT +          +        + MS NPK+QRYL+A+EY
Sbjct: 6    KHSLDTESR---NRPSKILKTQDFVDDNEEGEEELQESSFVAESMSSNPKLQRYLIAVEY 62

Query: 304  IGTRFSGSQKQPNCRTVVGVLEEAFHKFVGQPVSVTISSRTDAGVHALSNVCHVDVERIS 483
            IGT+F+GSQKQ N RTVVGVLEEAF KF+GQ VSV++SSRTDAGVHALSNVCHVD+ERIS
Sbjct: 63   IGTKFAGSQKQLNGRTVVGVLEEAFCKFIGQQVSVSLSSRTDAGVHALSNVCHVDIERIS 122

Query: 484  KRKPGEVLPAHEPGVVRRAVNHFLQKNEGDITVIDVRCVPPDFHSRFKARERTYFYRLLS 663
            KRKPGEVLP HEP VVRRAVNHFLQKNEGDI V DVRCVP DFH+RFKA+ERTYFYR LS
Sbjct: 123  KRKPGEVLPPHEPAVVRRAVNHFLQKNEGDIMVTDVRCVPSDFHARFKAQERTYFYRFLS 182

Query: 664  GPEPLSTFEKDRAWHVQEELDLVSMQKACRVLVGSHDFSSFRAAGCQANSPIRTLDELNV 843
            GPEPLSTFEKDRAWHV E+LD+V+MQ+AC+VLVG HDFSSFRA+GCQA SPIRTL E++V
Sbjct: 183  GPEPLSTFEKDRAWHVLEDLDIVAMQEACKVLVGHHDFSSFRASGCQAKSPIRTLAEISV 242

Query: 844  TEVVSTPYFPSIVERVKPISPSSSETELSVKNSIP-----NSYIAEGSSST----FGQQR 996
            +EV ST YFPSI ER +      +      K  +P     N+ +AE S       FG +R
Sbjct: 243  SEVASTLYFPSITEREQNCENGENSCCKKFKTDLPMGSHSNTNVAESSFGETDLGFGIRR 302

Query: 997  NHRCFVITARARSFLYHQVRLLVGVLKCVGTGNLSTDDVERILNAKTVTAASPMSPAYGL 1176
             HRCFV+TARARSFLYHQVRLLVGVLK VG G+L+T DVERIL+AK+VTAASPM+PA GL
Sbjct: 303  RHRCFVVTARARSFLYHQVRLLVGVLKSVGIGDLTTSDVERILSAKSVTAASPMAPARGL 362

Query: 1177 YLGNVGYELP 1206
            YLG+V Y+LP
Sbjct: 363  YLGHVKYDLP 372


>ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase A-like [Glycine max]
          Length = 369

 Score =  470 bits (1210), Expect = e-130
 Identities = 243/351 (69%), Positives = 280/351 (79%), Gaps = 11/351 (3%)
 Frame = +1

Query: 187  KPSKIPKTLNTXXXXXXXXNQKLMSQNPK--IQRYLLAIEYIGTRFSGSQKQPNCRTVVG 360
            +PSKI K +           ++ MSQNP+  IQRYL+AIEYIGT FSGSQKQ N RTVVG
Sbjct: 18   RPSKISK-IEYPSDSDIDEEEEGMSQNPRNGIQRYLVAIEYIGTLFSGSQKQLNVRTVVG 76

Query: 361  VLEEAFHKFVGQPVSVTISSRTDAGVHALSNVCHVDVERISKRKPGEVLPAHEPGVVRRA 540
             LEEAF KFVGQPVSV+ SSRTDAGVHALSNVCHVD++RISKR+PGEVLP HEP VV RA
Sbjct: 77   ALEEAFSKFVGQPVSVSCSSRTDAGVHALSNVCHVDIQRISKRRPGEVLPPHEPAVVGRA 136

Query: 541  VNHFLQKNEGDITVIDVRCVPPDFHSRFKARERTYFYRLLSGPEPLSTFEKDRAWHVQEE 720
            VNHFLQK++ D+ VIDVRCVP DFH+RFKA+ERTYFYRLLSGPEPLSTFEKDRAWHV EE
Sbjct: 137  VNHFLQKHDSDLMVIDVRCVPSDFHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPEE 196

Query: 721  LDLVSMQKACRVLVGSHDFSSFRAAGCQANSPIRTLDELNVTEVVSTPYFPSIVERVKPI 900
            L L +MQ+ACRVLVG HDFSSFRAAGCQA SPIRTLDEL+V EV+ +PYFPS+++R +  
Sbjct: 197  LSLPAMQEACRVLVGCHDFSSFRAAGCQAKSPIRTLDELSVNEVIESPYFPSLMDREQHN 256

Query: 901  SPS--------SSETEL-SVKNSIPNSYIAEGSSSTFGQQRNHRCFVITARARSFLYHQV 1053
              S        ++ET++  + N   +  I     + FG++R HRC V+TARARSFLYHQV
Sbjct: 257  KVSGDLRSCSNNTETDIPPISNPSIDKVITSSQDAGFGKRRRHRCLVVTARARSFLYHQV 316

Query: 1054 RLLVGVLKCVGTGNLSTDDVERILNAKTVTAASPMSPAYGLYLGNVGYELP 1206
            RLLVGVLK  GTGNL+  DVERILNAKTVTAASPM+PA GLYLG V Y+LP
Sbjct: 317  RLLVGVLKAAGTGNLTIPDVERILNAKTVTAASPMAPACGLYLGEVKYDLP 367


>ref|XP_004161929.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 352

 Score =  461 bits (1187), Expect = e-127
 Identities = 236/353 (66%), Positives = 276/353 (78%)
 Frame = +1

Query: 148  KRSIDSHIEPPLHKPSKIPKTLNTXXXXXXXXNQKLMSQNPKIQRYLLAIEYIGTRFSGS 327
            K  ++  I+    +P KI KT +           + M+  P IQRYL+A+EYIGTRF GS
Sbjct: 6    KHGLELSIDSSSQRPLKIGKTTDELFHGDEE-EAETMNPKPGIQRYLVAVEYIGTRFYGS 64

Query: 328  QKQPNCRTVVGVLEEAFHKFVGQPVSVTISSRTDAGVHALSNVCHVDVERISKRKPGEVL 507
            Q+QPNCRTVVG LEEAF KF+GQPVSV  SSRTDAGVHALSNVCHVDVERISKRKPGEVL
Sbjct: 65   QQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 124

Query: 508  PAHEPGVVRRAVNHFLQKNEGDITVIDVRCVPPDFHSRFKARERTYFYRLLSGPEPLSTF 687
            P HEPGVV +AVNHFLQK+EGD+TV+DVR VP DFH+R+KA+ERTYFYRL+SGPE LS+F
Sbjct: 125  PPHEPGVVHKAVNHFLQKHEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPEALSSF 184

Query: 688  EKDRAWHVQEELDLVSMQKACRVLVGSHDFSSFRAAGCQANSPIRTLDELNVTEVVSTPY 867
            EKDRAWHV E L++ +MQ+AC+VLVG HDFSSFRAAGCQANSPIRTLDELNV EV STPY
Sbjct: 185  EKDRAWHVPETLNIGAMQEACKVLVGHHDFSSFRAAGCQANSPIRTLDELNVCEVASTPY 244

Query: 868  FPSIVERVKPISPSSSETELSVKNSIPNSYIAEGSSSTFGQQRNHRCFVITARARSFLYH 1047
            FP+ +ER +      SE E      +P S   E     FG +R HRCFV+TARARSFLYH
Sbjct: 245  FPTSMERKQRQGKEESEIE------VPCSETCEVG---FGIRRRHRCFVVTARARSFLYH 295

Query: 1048 QVRLLVGVLKCVGTGNLSTDDVERILNAKTVTAASPMSPAYGLYLGNVGYELP 1206
            QVRL+VGVLK VG+G+L+  DV RIL AK V++A PM+PA GLYLG+V Y+LP
Sbjct: 296  QVRLMVGVLKAVGSGDLTVGDVGRILEAKNVSSARPMAPACGLYLGHVKYDLP 348


>ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycine max]
            gi|255637177|gb|ACU18919.1| unknown [Glycine max]
          Length = 370

 Score =  461 bits (1186), Expect = e-127
 Identities = 239/353 (67%), Positives = 280/353 (79%), Gaps = 11/353 (3%)
 Frame = +1

Query: 181  LHKPSKIPKTLNTXXXXXXXXNQKLMSQNPK--IQRYLLAIEYIGTRFSGSQKQPNCRTV 354
            +++PSKI  ++           ++ M +NP+  IQRYL+AIEYIGTRFSGSQKQ N RTV
Sbjct: 18   INRPSKI--SIIEYPIDSDIDEEEEMIKNPRNGIQRYLVAIEYIGTRFSGSQKQLNVRTV 75

Query: 355  VGVLEEAFHKFVGQPVSVTISSRTDAGVHALSNVCHVDVERISKRKPGEVLPAHEPGVVR 534
            VGVLEEAF KFVGQPVSV+ SSRT AGVHALSNVCHVD++RISKR+PGEVL  HEP VV 
Sbjct: 76   VGVLEEAFSKFVGQPVSVSCSSRTVAGVHALSNVCHVDIQRISKRRPGEVLTPHEPAVVG 135

Query: 535  RAVNHFLQKNEGDITVIDVRCVPPDFHSRFKARERTYFYRLLSGPEPLSTFEKDRAWHVQ 714
            RAVNHFLQK + D+ VIDVRCVP DFH+RFKA+ER YFYRLLSGPEPLSTFEKDRAWHV 
Sbjct: 136  RAVNHFLQKQDSDLMVIDVRCVPSDFHARFKAQERIYFYRLLSGPEPLSTFEKDRAWHVP 195

Query: 715  EELDLVSMQKACRVLVGSHDFSSFRAAGCQANSPIRTLDELNVTEVVSTPYFPSIVERVK 894
            EEL L +MQ+ACRVLVG HDFSSFRAAGCQA SPIRTLDEL+V EV+ +PYFPS+++R +
Sbjct: 196  EELSLPAMQEACRVLVGFHDFSSFRAAGCQAKSPIRTLDELSVNEVIESPYFPSLMDREQ 255

Query: 895  --------PISPSSSETEL-SVKNSIPNSYIAEGSSSTFGQQRNHRCFVITARARSFLYH 1047
                       P++SET++    N   +  +A      FG++R HRC V+TARAR+FLYH
Sbjct: 256  HNKVSGDLRSCPNNSETDIPPTSNPSIDKVMASSQDVGFGKRRRHRCLVVTARARAFLYH 315

Query: 1048 QVRLLVGVLKCVGTGNLSTDDVERILNAKTVTAASPMSPAYGLYLGNVGYELP 1206
            QVRLLVGVLK VGTGNL+  DVERILNA+TVTAASPM+PA GLYLG V Y+LP
Sbjct: 316  QVRLLVGVLKAVGTGNLTIPDVERILNARTVTAASPMAPACGLYLGEVKYDLP 368