BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00003603
         (1282 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282652.1| PREDICTED: ATP-dependent Clp protease proteo...   406   e-111
ref|XP_003534318.1| PREDICTED: ATP-dependent Clp protease proteo...   402   e-109
ref|XP_003517082.1| PREDICTED: ATP-dependent Clp protease proteo...   395   e-107
gb|AFK33568.1| unknown [Lotus japonicus]                              394   e-107
ref|XP_002519881.1| ATP-dependent Clp protease proteolytic subun...   387   e-105

>ref|XP_002282652.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
            chloroplastic [Vitis vinifera]
          Length = 291

 Score =  406 bits (1044), Expect = e-111
 Identities = 209/275 (76%), Positives = 240/275 (87%)
 Frame = -3

Query: 1121 RSASCYFSPSIQAAHISSPPTTSHGFHTKSLNNIQTLTLGFEHQPPSYSQSPPNAARGSD 942
            + +S    P I A+  SSP   +   +TK+L+++  L L         SQ+P   ARG++
Sbjct: 25   KPSSFSLRPLISASLSSSPSLKA--LNTKTLDSVLALPLAHG------SQTPGMGARGAE 76

Query: 941  TDPMGLLLRERIIFLGNQIDDFVADAIISQLLLLDAQDPTKDIRLFINSPGGSLSATMAI 762
             D MGLLL+ERI+FLGN +DDFVADAIISQLLLLDAQDPTKDIRLFINSPGGSLSATMAI
Sbjct: 77   ADAMGLLLKERIVFLGNNVDDFVADAIISQLLLLDAQDPTKDIRLFINSPGGSLSATMAI 136

Query: 761  YDVVQLVRADISTIALGIAASTASIILGGGTRGKRLAMPNTRIMLHQPLGGASGQAIDVE 582
            YD+VQLVRAD+ST+ALGI+ASTASIILGGGT+GKR AMPNTRIM+HQPLGGASGQAIDVE
Sbjct: 137  YDIVQLVRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAIDVE 196

Query: 581  IQAKEIMHNKNNVTKIISGFTGRSFEQVQKDIDRDRYMSPMEAVEYGIIDGVIDRDSIIP 402
            IQA+EIMHNK+NVTKII+GF+GRSFEQV+KDIDRDRYMSP+EAVEYGIID VIDRDSIIP
Sbjct: 197  IQAQEIMHNKSNVTKIIAGFSGRSFEQVEKDIDRDRYMSPIEAVEYGIIDAVIDRDSIIP 256

Query: 401  LMPVPDKVKSRLNYEEINKDPKKFLTPDIPDDEIY 297
            L+PVP+KVKSRLNYEEI+KDP+KFLTPDIPDDEIY
Sbjct: 257  LVPVPEKVKSRLNYEEISKDPRKFLTPDIPDDEIY 291


>ref|XP_003534318.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
            chloroplastic-like [Glycine max]
          Length = 306

 Score =  402 bits (1032), Expect = e-109
 Identities = 207/271 (76%), Positives = 235/271 (86%)
 Frame = -3

Query: 1109 CYFSPSIQAAHISSPPTTSHGFHTKSLNNIQTLTLGFEHQPPSYSQSPPNAARGSDTDPM 930
            C F+P+      S  P+ +  F ++S N     +L FE   P   Q+P  AARG++ D M
Sbjct: 48   CVFTPA------SPIPSKNPNFGSQSRN---PTSLTFELSSP---QTPSTAARGAEGDVM 95

Query: 929  GLLLRERIIFLGNQIDDFVADAIISQLLLLDAQDPTKDIRLFINSPGGSLSATMAIYDVV 750
            GLLLRERI+FLG+ IDDFVADAI+SQ+LLLDAQDPTKDIRLFINS GGSLSATMAIYD V
Sbjct: 96   GLLLRERIVFLGSSIDDFVADAIMSQMLLLDAQDPTKDIRLFINSTGGSLSATMAIYDAV 155

Query: 749  QLVRADISTIALGIAASTASIILGGGTRGKRLAMPNTRIMLHQPLGGASGQAIDVEIQAK 570
            QLVRAD+ST+ALGIAASTAS+ILGGGT+GKR AMPNTRIM+HQPLGGASGQAIDVEIQAK
Sbjct: 156  QLVRADVSTVALGIAASTASVILGGGTKGKRFAMPNTRIMIHQPLGGASGQAIDVEIQAK 215

Query: 569  EIMHNKNNVTKIISGFTGRSFEQVQKDIDRDRYMSPMEAVEYGIIDGVIDRDSIIPLMPV 390
            E+MHNKNN+T+IIS FTGRSFEQVQKDIDRD+YMSP+EAVEYGIIDGVIDRDSIIPLMPV
Sbjct: 216  EVMHNKNNITRIISSFTGRSFEQVQKDIDRDKYMSPIEAVEYGIIDGVIDRDSIIPLMPV 275

Query: 389  PDKVKSRLNYEEINKDPKKFLTPDIPDDEIY 297
            P++VKS LNYEEI+KDP+KFLTPDIPDDEIY
Sbjct: 276  PERVKSTLNYEEISKDPRKFLTPDIPDDEIY 306


>ref|XP_003517082.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
            chloroplastic-like [Glycine max]
          Length = 306

 Score =  395 bits (1015), Expect = e-107
 Identities = 199/237 (83%), Positives = 219/237 (92%)
 Frame = -3

Query: 1007 LGFEHQPPSYSQSPPNAARGSDTDPMGLLLRERIIFLGNQIDDFVADAIISQLLLLDAQD 828
            L FE   P   Q+P  AARG++ D MGLLLRERI+FLG+ IDDFVADAI+SQLLLLDA D
Sbjct: 73   LTFELSAP---QTPSTAARGAEGDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDALD 129

Query: 827  PTKDIRLFINSPGGSLSATMAIYDVVQLVRADISTIALGIAASTASIILGGGTRGKRLAM 648
            PTKDIRLFINS GGSLSATMAIYD VQLVRAD+ST+ALGIAASTAS+ILGGGT+GKR AM
Sbjct: 130  PTKDIRLFINSTGGSLSATMAIYDAVQLVRADVSTVALGIAASTASVILGGGTKGKRFAM 189

Query: 647  PNTRIMLHQPLGGASGQAIDVEIQAKEIMHNKNNVTKIISGFTGRSFEQVQKDIDRDRYM 468
            PNTRIM+HQPLGGASGQAIDVEIQAKE+MHNKNN+T+IIS FTGRSFEQVQKDIDRD+YM
Sbjct: 190  PNTRIMVHQPLGGASGQAIDVEIQAKEVMHNKNNITRIISSFTGRSFEQVQKDIDRDKYM 249

Query: 467  SPMEAVEYGIIDGVIDRDSIIPLMPVPDKVKSRLNYEEINKDPKKFLTPDIPDDEIY 297
            SP+EAVEYGIIDGVIDRDSIIPLMPVP++VKS LNYEEI+KDP+KFLTPDIPDDEIY
Sbjct: 250  SPIEAVEYGIIDGVIDRDSIIPLMPVPERVKSTLNYEEISKDPRKFLTPDIPDDEIY 306


>gb|AFK33568.1| unknown [Lotus japonicus]
          Length = 308

 Score =  394 bits (1011), Expect = e-107
 Identities = 210/297 (70%), Positives = 237/297 (79%), Gaps = 23/297 (7%)
 Frame = -3

Query: 1118 SASCYFSPSIQAAHISSPPTTSHG-----------------FHTKSLNNIQTLTLGFEHQ 990
            S+S  FSPS      S PPT+S                     T S N+ +      E  
Sbjct: 12   SSSLPFSPSRIRTLFSKPPTSSFNPKPSSPSPCHRTTPLKCILTASPNHSKNANFEPESL 71

Query: 989  PP------SYSQSPPNAARGSDTDPMGLLLRERIIFLGNQIDDFVADAIISQLLLLDAQD 828
             P      S  Q+P  A RG++TD M LLLRERI+FLG+ IDDFVADAI+SQLLLLDAQD
Sbjct: 72   KPRITFQMSSPQTPATAIRGAETDAMWLLLRERIVFLGSGIDDFVADAIMSQLLLLDAQD 131

Query: 827  PTKDIRLFINSPGGSLSATMAIYDVVQLVRADISTIALGIAASTASIILGGGTRGKRLAM 648
            P+KDI+LFINSPGGSLSATMAIYD VQLVRAD+STIALGIAASTASIILGGGT+GKR AM
Sbjct: 132  PSKDIKLFINSPGGSLSATMAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAM 191

Query: 647  PNTRIMLHQPLGGASGQAIDVEIQAKEIMHNKNNVTKIISGFTGRSFEQVQKDIDRDRYM 468
            PNTRIM+HQPLGGASGQAIDVEIQAKE+MHNKNNVT+IISGFTGR+FEQVQKDIDRDRYM
Sbjct: 192  PNTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYM 251

Query: 467  SPMEAVEYGIIDGVIDRDSIIPLMPVPDKVKSRLNYEEINKDPKKFLTPDIPDDEIY 297
            SP+EAVEYGIIDGVID++SIIPL PVP++V+S LNYEEI+KDP+KFLTP+IPDDEIY
Sbjct: 252  SPIEAVEYGIIDGVIDKESIIPLEPVPERVRSTLNYEEISKDPRKFLTPEIPDDEIY 308


>ref|XP_002519881.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
            communis] gi|223540927|gb|EEF42485.1| ATP-dependent Clp
            protease proteolytic subunit, putative [Ricinus communis]
          Length = 294

 Score =  387 bits (995), Expect = e-105
 Identities = 200/269 (74%), Positives = 229/269 (85%), Gaps = 2/269 (0%)
 Frame = -3

Query: 1097 PSIQAAHISSPPTTSHG--FHTKSLNNIQTLTLGFEHQPPSYSQSPPNAARGSDTDPMGL 924
            PS+ + +  SP ++ H   F + S+ +  TLT  F     +  Q+P  A RG+++D MGL
Sbjct: 31   PSLVSFNFKSPISSPHNKNFPSFSIQSSGTLTPQF-----TAPQTPATAMRGAESDAMGL 85

Query: 923  LLRERIIFLGNQIDDFVADAIISQLLLLDAQDPTKDIRLFINSPGGSLSATMAIYDVVQL 744
            LLRERI+FLGN IDDFVADA ISQLLLLDAQDPTKDIRLFIN PGGSLSATMAIYDVVQL
Sbjct: 86   LLRERIVFLGNNIDDFVADATISQLLLLDAQDPTKDIRLFINCPGGSLSATMAIYDVVQL 145

Query: 743  VRADISTIALGIAASTASIILGGGTRGKRLAMPNTRIMLHQPLGGASGQAIDVEIQAKEI 564
            VRAD+ST+ALGI+ASTASIILGGGT+GKR AMPNTRIM+HQPLGGASGQAIDVEIQA+EI
Sbjct: 146  VRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMVHQPLGGASGQAIDVEIQAREI 205

Query: 563  MHNKNNVTKIISGFTGRSFEQVQKDIDRDRYMSPMEAVEYGIIDGVIDRDSIIPLMPVPD 384
            MHNKNNV +IISGFTGR+ EQV KDIDRDRYMSP+EAVEYGIIDGVID DSIIPL PVP+
Sbjct: 206  MHNKNNVVRIISGFTGRTVEQVLKDIDRDRYMSPIEAVEYGIIDGVIDGDSIIPLAPVPE 265

Query: 383  KVKSRLNYEEINKDPKKFLTPDIPDDEIY 297
            +VK  L+YEE+ KDP KFLTPD+PDDEI+
Sbjct: 266  RVKPTLSYEEMRKDPMKFLTPDVPDDEIF 294