BLASTX nr result
ID: Cimicifuga21_contig00003599
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00003599
(1815 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004138675.1| PREDICTED: pre-mRNA-processing ATP-dependent... 392 e-106
ref|XP_002530895.1| dead box ATP-dependent RNA helicase, putativ... 388 e-105
tpg|DAA59247.1| TPA: ATP-dependent RNA helicase [Zea mays] 359 2e-96
ref|NP_001150848.1| ATP-dependent RNA helicase [Zea mays] gi|195... 357 4e-96
ref|XP_002268926.1| PREDICTED: uncharacterized protein LOC100260... 352 2e-94
>ref|XP_004138675.1| PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase prp5-like
[Cucumis sativus] gi|449517699|ref|XP_004165882.1|
PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase
prp5-like [Cucumis sativus]
Length = 562
Score = 392 bits (1008), Expect = e-106
Identities = 251/567 (44%), Positives = 334/567 (58%), Gaps = 11/567 (1%)
Frame = -1
Query: 1755 MVKGEDAVXXXXXXXXXXXXRADDS-SSKVSARVAAIIASKQRRKNGKRRMCEGMCFSLP 1579
M KG+DA+ R+ SS VSARVA+IIA+K+RR +GKRR C+GMCFSLP
Sbjct: 1 MAKGDDALTRKRNKASRKKLRSKSGDSSAVSARVASIIAAKKRRMSGKRRQCQGMCFSLP 60
Query: 1578 TLEDPFNDKHGQKKSNKTNAQKPADPRTEALVSVTQKDAALRMDVFGRQSGPQKDKSANA 1399
T +DP+ND++G KK K K + S + + LR DV + K+ S
Sbjct: 61 TPDDPYNDRNG-KKDTKVKPSKSSKREFPKEKSTSAPNGTLR-DVCFENARSSKEGSGGT 118
Query: 1398 KYEKFKEVPSFPRKDQRNPIQPLETKNGMLGKGGVSHRQHRRIHGSADGPSKFLTMCLKA 1219
+PS R +R+ P TK KG V Q S PSKFL +CL A
Sbjct: 119 -------LPS-GRVAKRSKTDPERTKEYGNAKGSVQGFQEEDSESSV-APSKFLILCLSA 169
Query: 1218 IQDTLLGKDIFKGNSEHPLLLNKWGAEFLACSLLGTDILETTGACSSAEQIAWMVSXXXX 1039
I++ L I N PL + WG EF C G DIL+T+G S+ E+IAW+VS
Sbjct: 170 IENALYHDSIKSINK--PLFADTWGIEFWKCYSSGKDILDTSGLSSTDEKIAWVVSSAAD 227
Query: 1038 XXXIKEKEGLFVANPFLLILVPSKEKAIQVRTLCKPLKALGIHTVSLHTGASLDHQIQGL 859
KEKEG ++PFLL LVP++EKA Q+R++CKPLKALG+HTVS+H GASL HQIQGL
Sbjct: 228 SIARKEKEGSSFSSPFLLFLVPNQEKATQIRSMCKPLKALGVHTVSIHPGASLGHQIQGL 287
Query: 858 KACEPEFLVSTPERLLELVSAKAVDISGLSFLVVDGLETFAKNGLLDQLKSIKQSILRAS 679
K+CEPEFLVSTPERLLELV+ +A+DISG+S LVVDGLE+ ++ G LD +SI++SI
Sbjct: 288 KSCEPEFLVSTPERLLELVAMQAIDISGVSLLVVDGLESLSRGGYLDMTQSIRKSISSKL 347
Query: 678 LTVVFCDSFGTLSTSVVRTLLDGGPITRMSLTDXXXXXXXXXXXCVHVCDSQ-EKPSKGI 502
T+VF DSF +++LL GGPI R+SL ++ S+ EK SK I
Sbjct: 348 HTIVFSDSFSCAYVPFIQSLL-GGPIRRLSLNTSVACQSACIIQSINFYTSEKEKLSKVI 406
Query: 501 QILNEECEKRLCCDSLKVLFVEETSSKARILGALLIAEGYSISNDAL----EVAYS---- 346
Q L+ ++ LK+LF+ L A L +G+ I AL E+ +
Sbjct: 407 QALDRANGSQIRPQPLKMLFILGKECNVHDLAAALKFKGHDIVAGALCGVPEIKNNLKVD 466
Query: 345 -KEQATVTVTDLEQIEKMTDMEEFEIVVITSFPPEIDDYVQILTGMARQSVNGVLHSCVC 169
K + V TD+EQI + D+ +E + I S P ID YV+ILTGMAR + NGVLHS +
Sbjct: 467 GKLRPVVAKTDIEQINTI-DLGTYESIFILSAFPPIDKYVEILTGMARHTNNGVLHSFIS 525
Query: 168 REDAPVAGALIEILEQCDQNVPEFLRS 88
+E+A VAG+L+EILEQC Q+VP+ +R+
Sbjct: 526 KEEASVAGSLVEILEQCGQDVPKTVRN 552
>ref|XP_002530895.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223529548|gb|EEF31501.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 493
Score = 388 bits (997), Expect = e-105
Identities = 243/568 (42%), Positives = 330/568 (58%), Gaps = 3/568 (0%)
Frame = -1
Query: 1755 MVKGEDAVXXXXXXXXXXXXRADDSSSKVSARVAAIIASKQRRKNGKRRMCEGMCFSLPT 1576
M KG+D V ++SS+ VSARVA+IIA+K+RR +GKRRMC+GMCFSLPT
Sbjct: 1 MAKGDDTVTKKRNKAKRKKLNRENSSN-VSARVASIIAAKKRRLSGKRRMCQGMCFSLPT 59
Query: 1575 LEDPFNDKHGQKKSNKTNAQKPADPRTEALVSVTQKDAALRMDVFGRQSGPQKDKSANAK 1396
L+DPFN++HG RMD+ N K
Sbjct: 60 LDDPFNERHG------------------------------RMDI-------------NVK 76
Query: 1395 YEKFKEVPSFPRKDQRNPIQPLETKNGMLGKGGVSHRQHRRIHGSADGPSKFLTMCLKAI 1216
+K K + R +Q L ++H++ + +DGPSKF +CL AI
Sbjct: 77 DKKKKV-------NTREKVQ--------LNGNDLNHQEQACDY--SDGPSKFFILCLNAI 119
Query: 1215 QDTLLGKDIFKGNSEHPLLLNKWGAEFLACSLLGTDILETTGACSSAEQIAWMVSXXXXX 1036
+ L + + E PLL+N WG EFL +G DILET+G+ + EQIAW+VS
Sbjct: 120 EKALRHDGTYN-DEEKPLLVNPWGLEFLKFCSIGKDILETSGSSCTIEQIAWIVSIAADA 178
Query: 1035 XXIKEKEGLFVANPFLLILVPSKEKAIQVRTLCKPLKALGIHTVSLHTGASLDHQIQGLK 856
KEKEGL ++PFLL LVPS+EKA +VR +CKPLK LG+HTVSLH GASLDHQI+GLK
Sbjct: 179 IARKEKEGLSFSSPFLLFLVPSQEKAAKVRMVCKPLKDLGVHTVSLHAGASLDHQIRGLK 238
Query: 855 ACEPEFLVSTPERLLELVSAKAVDISGLSFLVVDGLETFAKNGLLDQLKSIKQSILRASL 676
+CEPEFLVSTPERL+EL+S KA+DI+G+SFLVVDGL++ ++G L LKSI+QSI
Sbjct: 239 SCEPEFLVSTPERLMELISLKAIDITGVSFLVVDGLDSLYQDGSLGSLKSIRQSISGNPH 298
Query: 675 TVVFCDSFGTLSTSVVRTLLDGGPITRMSLTDXXXXXXXXXXXCVHVCDSQEKPSKGIQI 496
TV F + F ++ L G I R+SL+D + VC S++K
Sbjct: 299 TVAFNNLFNHACVPALQNLFVGS-INRLSLSDSICSQSACIFQTIEVCTSEQKKL----- 352
Query: 495 LNEECEKRLCCDSLKVLFVEETSSKARILGALLIAEGYSISNDA-LEVAY--SKEQATVT 325
+LC LK+LF+ E + KA L +L + GYS+S ++ EV+ ++ + V+
Sbjct: 353 ------SKLCSHRLKLLFIVENNKKAASLVKILKSNGYSVSTESNCEVSNVDTRMKPVVS 406
Query: 324 VTDLEQIEKMTDMEEFEIVVITSFPPEIDDYVQILTGMARQSVNGVLHSCVCREDAPVAG 145
V + E I D+ +EI+++ +F ID+Y+QILT MAR + +G+LHS + EDA +AG
Sbjct: 407 VINAEHI-STADLGVYEIIILPNFVLSIDNYIQILTRMARHTTHGILHSFMTEEDALLAG 465
Query: 144 ALIEILEQCDQNVPEFLRSYQDSKSM*E 61
LIEILEQC Q VPE LR+ SM E
Sbjct: 466 PLIEILEQCGQAVPETLRTLHLRSSMSE 493
>tpg|DAA59247.1| TPA: ATP-dependent RNA helicase [Zea mays]
Length = 525
Score = 359 bits (921), Expect = 2e-96
Identities = 224/566 (39%), Positives = 317/566 (56%), Gaps = 6/566 (1%)
Frame = -1
Query: 1755 MVKGEDAVXXXXXXXXXXXXRADDSSSKVSARVAAIIASKQRRKNGKRRMCEGMCFSLPT 1576
M KG+DA+ R+ +++ VSARVAAIIASK RRK+GKRR CEGMCFSLPT
Sbjct: 1 MAKGDDALARKRNRVRRKRLRSSENA--VSARVAAIIASKHRRKSGKRRACEGMCFSLPT 58
Query: 1575 LEDPFNDKHGQKKSNKTNAQKPADPRTEALVSVTQKDAALRMDVFGRQSGPQKDKSANAK 1396
+DPFN++HG+K +PAD T DAA SG K K AN K
Sbjct: 59 PDDPFNERHGRKHKLD---DEPADD--------TAADAA-------EDSGNPKKKGANTK 100
Query: 1395 YEKFKEVPSFPRKDQRNPIQPLETKNGMLGKGGVSHRQHRRIHGSADGPSKFLTMCLKAI 1216
K + V + + + ++ ET + + G D PSKFL +CL AI
Sbjct: 101 --KQQPVAKYGAEAKSKAVRERETGAEV-------------VRGDFDRPSKFLVVCLNAI 145
Query: 1215 QDTLLGKDIFKGNSEHPLLLNKWGAEFLAC--SLLGTDILETTGACSSAEQIAWMVSXXX 1042
+D + ++ G S H WG E C + +D+L+ +GAC++ Q AW+VS
Sbjct: 146 RDAVAPEE--GGGSIHGA--GDWGVELWRCCSAQAPSDVLDASGACATVAQTAWLVSTAC 201
Query: 1041 XXXXIKEKEGLFVANPFLLILVPSKEKAIQVRTLCKPLKALGIHTVSLHTGASLDHQIQG 862
KE+ G+ V+ PFLL LV S++KA QVR++CKPLK LGIH+VSLH GAS++HQI G
Sbjct: 202 DIVARKERHGMVVSCPFLLYLVSSQDKAAQVRSICKPLKPLGIHSVSLHPGASIEHQISG 261
Query: 861 LKACEPEFLVSTPERLLELVSAKAVDISGLSFLVVDGLETFAKNGLLDQLKSIKQSILRA 682
LK CEPEFL++TPERLLELVS KA+DISG+S LV+DGL+ F + + D++ SI+ +I
Sbjct: 262 LKTCEPEFLIATPERLLELVSLKAIDISGVSMLVIDGLKCFVDHNVSDKIFSIRDAISNN 321
Query: 681 SLTVVFCDSFGTLSTSVVRTLLDGGPITRMSLTDXXXXXXXXXXXCVHVCDSQEKPSKGI 502
+F D ++ + LL G IT++S+ D VH C S+E + +
Sbjct: 322 LQITIFTDPSDKNIATMAKNLL-RGRITKLSINDSVSSRSAFIAQHVHFCPSEELKTTKV 380
Query: 501 QILNEECEKRLCCDSLKVLFVEETSSKARILGALLIAEGYSISND----ALEVAYSKEQA 334
+ + E+ + + KVL V + KAR++ L E ++ +D + + S
Sbjct: 381 KEILEQILQDHPKKTSKVLLVAASDKKARLMSLSLKLENCTVIDDSCGNSFTICSSVGLM 440
Query: 333 TVTVTDLEQIEKMTDMEEFEIVVITSFPPEIDDYVQILTGMARQSVNGVLHSCVCREDAP 154
V V D E + +TD+E FE V++ PP +D+Y++ILTG A + G +HS C DA
Sbjct: 441 NVIVKDRENM-SVTDVEAFETVLVVDLPPSVDEYIEILTGAALHVIGGEVHSIFCNTDAS 499
Query: 153 VAGALIEILEQCDQNVPEFLRSYQDS 76
VA L ++L C Q VPEFL+S + S
Sbjct: 500 VAKPLAQLLADCGQVVPEFLKSLKSS 525
>ref|NP_001150848.1| ATP-dependent RNA helicase [Zea mays] gi|195642358|gb|ACG40647.1|
ATP-dependent RNA helicase [Zea mays]
Length = 525
Score = 357 bits (917), Expect = 4e-96
Identities = 223/566 (39%), Positives = 317/566 (56%), Gaps = 6/566 (1%)
Frame = -1
Query: 1755 MVKGEDAVXXXXXXXXXXXXRADDSSSKVSARVAAIIASKQRRKNGKRRMCEGMCFSLPT 1576
M KG+DA+ R+ +++ VSARVAAIIASK RRK+GKRR CEGMCFSLPT
Sbjct: 1 MAKGDDALARKRNRVRRKRLRSSENA--VSARVAAIIASKHRRKSGKRRACEGMCFSLPT 58
Query: 1575 LEDPFNDKHGQKKSNKTNAQKPADPRTEALVSVTQKDAALRMDVFGRQSGPQKDKSANAK 1396
+DPFN++HG+K +PAD T DAA SG K K AN K
Sbjct: 59 PDDPFNERHGRKHKLD---DEPADD--------TAADAA-------EDSGNPKKKGANTK 100
Query: 1395 YEKFKEVPSFPRKDQRNPIQPLETKNGMLGKGGVSHRQHRRIHGSADGPSKFLTMCLKAI 1216
K + V + + + ++ ET + + G D PSKFL +CL AI
Sbjct: 101 --KQQPVAKYGAEAKSKAVRERETGAEV-------------VRGDFDRPSKFLVVCLNAI 145
Query: 1215 QDTLLGKDIFKGNSEHPLLLNKWGAEFLAC--SLLGTDILETTGACSSAEQIAWMVSXXX 1042
+D + ++ G S H WG E C + +D+L+ +GAC++ Q AW+VS
Sbjct: 146 RDAVAPEE--GGGSIHGA--GDWGVELWRCCSAQAPSDVLDASGACATVAQTAWLVSTAC 201
Query: 1041 XXXXIKEKEGLFVANPFLLILVPSKEKAIQVRTLCKPLKALGIHTVSLHTGASLDHQIQG 862
KE+ G+ V+ PFLL LV S++KA QV+++CKPLK LGIH+VSLH GAS++HQI G
Sbjct: 202 DIVARKERHGMVVSCPFLLYLVSSQDKAAQVQSICKPLKPLGIHSVSLHPGASIEHQISG 261
Query: 861 LKACEPEFLVSTPERLLELVSAKAVDISGLSFLVVDGLETFAKNGLLDQLKSIKQSILRA 682
LK CEPEFL++TPERLLELVS KA+DISG+S LV+DGL+ F + + D++ SI+ +I
Sbjct: 262 LKTCEPEFLIATPERLLELVSLKAIDISGVSMLVIDGLKCFVDHNVSDKIFSIRDAISNN 321
Query: 681 SLTVVFCDSFGTLSTSVVRTLLDGGPITRMSLTDXXXXXXXXXXXCVHVCDSQEKPSKGI 502
+F D ++ + LL G IT++S+ D VH C S+E + +
Sbjct: 322 LQITIFTDPSDKNIATMAKNLL-RGRITKLSINDSVSSRSAFIAQHVHFCPSEELKTTKV 380
Query: 501 QILNEECEKRLCCDSLKVLFVEETSSKARILGALLIAEGYSISND----ALEVAYSKEQA 334
+ + E+ + + KVL V + KAR++ L E ++ +D + + S
Sbjct: 381 KEILEQILQDHPKKTSKVLLVAASDKKARLMSLSLKLENCTVIDDSCGNSFTICSSVGLM 440
Query: 333 TVTVTDLEQIEKMTDMEEFEIVVITSFPPEIDDYVQILTGMARQSVNGVLHSCVCREDAP 154
V V D E + +TD+E FE V++ PP +D+Y++ILTG A + G +HS C DA
Sbjct: 441 NVIVKDRENM-SVTDVEAFETVLVVDLPPSVDEYIEILTGAALHVIGGEVHSIFCNTDAS 499
Query: 153 VAGALIEILEQCDQNVPEFLRSYQDS 76
VA L ++L C Q VPEFL+S + S
Sbjct: 500 VAKPLAQLLADCGQVVPEFLKSLKSS 525
>ref|XP_002268926.1| PREDICTED: uncharacterized protein LOC100260841 isoform 2 [Vitis
vinifera]
Length = 407
Score = 352 bits (902), Expect = 2e-94
Identities = 193/390 (49%), Positives = 245/390 (62%), Gaps = 8/390 (2%)
Frame = -1
Query: 1755 MVKGEDAVXXXXXXXXXXXXRADDSSSKVSARVAAIIASKQRRKNGKRRMCEGMCFSLPT 1576
M KG+DA+ D SSS VSARVAAIIASK+RRK+GKRR+CEGMCFSLPT
Sbjct: 1 MAKGDDAIQRKKNKSNRKKLHKDSSSSAVSARVAAIIASKKRRKSGKRRICEGMCFSLPT 60
Query: 1575 LEDPFNDKHGQKKSNKTNAQKPADPRTEALVSVTQKDAALRMDVFGRQSGPQKDKSANAK 1396
EDPFN++H +K S + +K R + +S + AL +G N
Sbjct: 61 PEDPFNERHEKKDSKRQKTKKLVPSRQDGGLSSNGTNTALT-------NGTLDGNHVNVD 113
Query: 1395 YEKFKEVPSFPRKDQRNPIQPLETKNG--------MLGKGGVSHRQHRRIHGSADGPSKF 1240
+++ K + +Q+ + ++ G + GKG + H Q ++ ++D PSKF
Sbjct: 114 HQELKRHVKNIKNEQKEVLPSIDNVGGKSEKGKIPLPGKGRIVHGQQQQSCENSDCPSKF 173
Query: 1239 LTMCLKAIQDTLLGKDIFKGNSEHPLLLNKWGAEFLACSLLGTDILETTGACSSAEQIAW 1060
L +CLK+IQ L IF + PL +N+WG EF C G +ILET+GACS+ EQIAW
Sbjct: 174 LILCLKSIQSALQQDVIFNFKEDKPLFVNEWGVEFWKCYSSGINILETSGACSTLEQIAW 233
Query: 1059 MVSXXXXXXXIKEKEGLFVANPFLLILVPSKEKAIQVRTLCKPLKALGIHTVSLHTGASL 880
M+S KEKEGLF+ +PFLL LVPS+EKA +VR +CKPLKALGIHTVSLH GASL
Sbjct: 234 MISTAADTIARKEKEGLFLTSPFLLFLVPSQEKAAKVRAVCKPLKALGIHTVSLHPGASL 293
Query: 879 DHQIQGLKACEPEFLVSTPERLLELVSAKAVDISGLSFLVVDGLETFAKNGLLDQLKSIK 700
DHQI GLK+CEPEFLV+TPERLLEL+S KA+DISG+S LVVDGL+T K G LD +KSI+
Sbjct: 294 DHQIHGLKSCEPEFLVATPERLLELISLKAIDISGVSLLVVDGLDTLCKGGYLDMIKSIR 353
Query: 699 QSILRASLTVVFCDSFGTLSTSVVRTLLDG 610
QSI VVF + S V LL G
Sbjct: 354 QSISGNPHAVVFSERSSCTSVPGVEDLLRG 383