BLASTX nr result

ID: Cimicifuga21_contig00003585 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00003585
         (1150 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002298215.1| predicted protein [Populus trichocarpa] gi|2...   421   e-115
ref|XP_002303286.1| predicted protein [Populus trichocarpa] gi|2...   417   e-114
ref|XP_002516060.1| Mitochondrial carnitine/acylcarnitine carrie...   417   e-114
ref|XP_003529624.1| PREDICTED: mitochondrial carnitine/acylcarni...   397   e-108
dbj|BAK05601.1| predicted protein [Hordeum vulgare subsp. vulgare]    395   e-107

>ref|XP_002298215.1| predicted protein [Populus trichocarpa] gi|222845473|gb|EEE83020.1|
           predicted protein [Populus trichocarpa]
          Length = 310

 Score =  421 bits (1083), Expect = e-115
 Identities = 212/304 (69%), Positives = 243/304 (79%), Gaps = 5/304 (1%)
 Frame = -3

Query: 929 MDFWPEFLANSWGREFXXXXXXXXXXVISGYPLDTLRIRLQQPCNTSSASTLLRSIVSSE 750
           MDFWPEFLA+SWGREF          +ISGYPLDTLRIRLQQP N+ SA ++LR +++ E
Sbjct: 1   MDFWPEFLASSWGREFVAGGFGGIAGIISGYPLDTLRIRLQQP-NSGSAFSILRRVMAGE 59

Query: 749 GPLALYRGMTAPLASVTFQNAMVFQVYALLSRAFDSSDTNSEPPSYKSVALGGVGTGALQ 570
           GP ALYRGM APLASVTFQNAMVFQ YA+LSRAFDSS + S+PPSYK V LGGVGTGA+Q
Sbjct: 60  GPAALYRGMGAPLASVTFQNAMVFQTYAILSRAFDSSVSASDPPSYKGVVLGGVGTGAIQ 119

Query: 569 SLLLSPVELVKIRLQLQTVNQQHYS-----KGPLGVAKDIFRREGMRGMYRGLTITVLRD 405
           S++LSPVELVKIRLQLQ V+  +       KGP+ VAK I + EG++G+YRG  ITVLRD
Sbjct: 120 SIMLSPVELVKIRLQLQNVSHANLHGAASYKGPVSVAKSILKTEGIKGIYRGFVITVLRD 179

Query: 404 APAHGVYFWTYEYAREKLHPGCRKSGQESVKTMLXXXXXXXXXSWACCYPLDVVKSRLQA 225
           APAHGVYFWTYEY RE+ HPGCRK+G ES++TML         SW CCYPLDVVK+RLQA
Sbjct: 180 APAHGVYFWTYEYMREQFHPGCRKNGHESLRTMLTAGGLAGVASWLCCYPLDVVKTRLQA 239

Query: 224 QSQASLDHPKPKYNGILDCFRKSVQEEGYCVLWRGLGTAVTRAFLVNGAVFAAYEITLRC 45
           Q+ +S      KY GILDCFR+SV+EEGYCVLWRGLGTAV RAF+VNGAVFAAYEI LRC
Sbjct: 240 QTPSS--SSPLKYKGILDCFRRSVKEEGYCVLWRGLGTAVARAFVVNGAVFAAYEIALRC 297

Query: 44  LFNN 33
           LFNN
Sbjct: 298 LFNN 301


>ref|XP_002303286.1| predicted protein [Populus trichocarpa] gi|222840718|gb|EEE78265.1|
           predicted protein [Populus trichocarpa]
          Length = 308

 Score =  417 bits (1072), Expect = e-114
 Identities = 210/304 (69%), Positives = 242/304 (79%), Gaps = 5/304 (1%)
 Frame = -3

Query: 929 MDFWPEFLANSWGREFXXXXXXXXXXVISGYPLDTLRIRLQQPCNTSSASTLLRSIVSSE 750
           MDFWPEF+A+SWGREF          +ISGYPLDTLRIRLQQ  N+ SA ++LR ++SSE
Sbjct: 1   MDFWPEFIASSWGREFVAGGFGGIAGIISGYPLDTLRIRLQQS-NSGSAFSILRRVMSSE 59

Query: 749 GPLALYRGMTAPLASVTFQNAMVFQVYALLSRAFDSSDTNSEPPSYKSVALGGVGTGALQ 570
           GP ALYRGM APLASVTFQNAMVFQ YA+LSRA DSS + ++PPSYK VALGGVGTGA+Q
Sbjct: 60  GPAALYRGMGAPLASVTFQNAMVFQTYAILSRALDSSASANDPPSYKGVALGGVGTGAIQ 119

Query: 569 SLLLSPVELVKIRLQLQTVNQQHYS-----KGPLGVAKDIFRREGMRGMYRGLTITVLRD 405
           S++LSPVEL+KIRLQLQ  N  +       KGPL VAK I + EG++GMYRG  ITVLRD
Sbjct: 120 SIILSPVELIKIRLQLQNRNHANLQEAASPKGPLSVAKSILKTEGLKGMYRGFVITVLRD 179

Query: 404 APAHGVYFWTYEYAREKLHPGCRKSGQESVKTMLXXXXXXXXXSWACCYPLDVVKSRLQA 225
           APA+GVYFWTYEY RE+ HPGCRK+GQESV+TML         SW CCYPLDVVK+RLQA
Sbjct: 180 APAYGVYFWTYEYMREQFHPGCRKNGQESVRTMLTAGGLAGVASWLCCYPLDVVKTRLQA 239

Query: 224 QSQASLDHPKPKYNGILDCFRKSVQEEGYCVLWRGLGTAVTRAFLVNGAVFAAYEITLRC 45
           QS +S    + KY GILDCF +SV+E+GYCVLWRGLGTAV RAF+VNGAVFA+YE  LRC
Sbjct: 240 QSPSS----QLKYKGILDCFSRSVKEDGYCVLWRGLGTAVARAFVVNGAVFASYETALRC 295

Query: 44  LFNN 33
           LFNN
Sbjct: 296 LFNN 299


>ref|XP_002516060.1| Mitochondrial carnitine/acylcarnitine carrier protein, putative
           [Ricinus communis] gi|223544965|gb|EEF46480.1|
           Mitochondrial carnitine/acylcarnitine carrier protein,
           putative [Ricinus communis]
          Length = 309

 Score =  417 bits (1071), Expect = e-114
 Identities = 208/304 (68%), Positives = 243/304 (79%), Gaps = 5/304 (1%)
 Frame = -3

Query: 929 MDFWPEFLANSWGREFXXXXXXXXXXVISGYPLDTLRIRLQQPCNTSSASTLLRSIVSSE 750
           MDFWPEFLA+SWGREF          +ISGYPLDTLRIR QQ  N+ SA ++LR ++S++
Sbjct: 1   MDFWPEFLASSWGREFVAGGFGGIAGIISGYPLDTLRIRQQQNSNSGSALSILRRVISTD 60

Query: 749 GPLALYRGMTAPLASVTFQNAMVFQVYALLSRAFDSSDTNSEPPSYKSVALGGVGTGALQ 570
           GP ALYRGM APLASVTFQNAMVFQ+YA+LSRAFDSS + ++PPSYK VALGGVGTGALQ
Sbjct: 61  GPGALYRGMGAPLASVTFQNAMVFQIYAILSRAFDSSVSINDPPSYKGVALGGVGTGALQ 120

Query: 569 SLLLSPVELVKIRLQLQTVNQQ-----HYSKGPLGVAKDIFRREGMRGMYRGLTITVLRD 405
           SL+L+PVEL+KIRLQLQ  +Q         KGP+ VAK I R EG+RG+YRG +ITVLRD
Sbjct: 121 SLMLTPVELIKIRLQLQDKSQSKPHQLDCHKGPMSVAKTILRTEGLRGIYRGFSITVLRD 180

Query: 404 APAHGVYFWTYEYAREKLHPGCRKSGQESVKTMLXXXXXXXXXSWACCYPLDVVKSRLQA 225
           AP+HG YFWTYEY RE+LHPGCRKSGQE ++TML         SW CCYPLDV+K+RLQA
Sbjct: 181 APSHGFYFWTYEYMREQLHPGCRKSGQERIRTMLVAGGLAGVASWVCCYPLDVLKTRLQA 240

Query: 224 QSQASLDHPKPKYNGILDCFRKSVQEEGYCVLWRGLGTAVTRAFLVNGAVFAAYEITLRC 45
           Q+ +S      KYNGILDCF++S+ EEGY VLWRGLGTAV RAF+VNGAVF+AYEI LRC
Sbjct: 241 QTPSS----PQKYNGILDCFQRSITEEGYRVLWRGLGTAVARAFVVNGAVFSAYEIALRC 296

Query: 44  LFNN 33
           LFNN
Sbjct: 297 LFNN 300


>ref|XP_003529624.1| PREDICTED: mitochondrial carnitine/acylcarnitine carrier protein
           CACL-like [Glycine max]
          Length = 303

 Score =  397 bits (1021), Expect = e-108
 Identities = 202/300 (67%), Positives = 236/300 (78%), Gaps = 1/300 (0%)
 Frame = -3

Query: 929 MDFWPEFLANSWGREFXXXXXXXXXXVISGYPLDTLRIRLQQPCNTSSASTLLRSIVSSE 750
           MDFWPEFLA+S GREF          +ISGYPLDTLRIRLQ   N  SA T+LR +VS E
Sbjct: 1   MDFWPEFLASSSGREFVAGGFGGIAGIISGYPLDTLRIRLQNSKN-GSAFTILRQMVSRE 59

Query: 749 GPLALYRGMTAPLASVTFQNAMVFQVYALLSRAFDSSDTNSEPPSYKSVALGGVGTGALQ 570
           GP +LYRGM APLASVTFQNAMVFQ YA+LSRAFDSS +  +PPSYK VALGG GTGA+Q
Sbjct: 60  GPASLYRGMGAPLASVTFQNAMVFQTYAVLSRAFDSSVSAKDPPSYKGVALGGTGTGAIQ 119

Query: 569 SLLLSPVELVKIRLQLQTVNQQ-HYSKGPLGVAKDIFRREGMRGMYRGLTITVLRDAPAH 393
           SLL+SPVEL K+RLQLQ   Q    +KGPL +AK+I+R+EG+RG+YRGL +TV+RD P+H
Sbjct: 120 SLLISPVELTKVRLQLQNAGQMTETAKGPLMLAKNIWRKEGLRGIYRGLGVTVMRDGPSH 179

Query: 392 GVYFWTYEYAREKLHPGCRKSGQESVKTMLXXXXXXXXXSWACCYPLDVVKSRLQAQSQA 213
           G+YFWTYEY RE+LHPGCRKSG+ES+ TML         SW  CYP DVVK+RLQAQ+ +
Sbjct: 180 GLYFWTYEYMREQLHPGCRKSGEESLNTMLIAGGLAGVTSWISCYPFDVVKTRLQAQTPS 239

Query: 212 SLDHPKPKYNGILDCFRKSVQEEGYCVLWRGLGTAVTRAFLVNGAVFAAYEITLRCLFNN 33
           S+     KY GI+DCF+KSV EEGY VLWRGLGT V RAFLVNGA+F+AYEI+LR LFNN
Sbjct: 240 SI-----KYKGIIDCFKKSVNEEGYGVLWRGLGTTVARAFLVNGAIFSAYEISLRLLFNN 294


>dbj|BAK05601.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 324

 Score =  395 bits (1015), Expect = e-107
 Identities = 201/313 (64%), Positives = 235/313 (75%), Gaps = 13/313 (4%)
 Frame = -3

Query: 929 MDFWPEFLANSWGREFXXXXXXXXXXVISGYPLDTLRIRLQQP-------------CNTS 789
           M+FWPEFLA S G EF          V++G+PLDTLRIRLQQP                 
Sbjct: 1   MEFWPEFLATSGGNEFVAGGVGGMAGVLAGHPLDTLRIRLQQPPRPMSPGITAARVARPP 60

Query: 788 SASTLLRSIVSSEGPLALYRGMTAPLASVTFQNAMVFQVYALLSRAFDSSDTNSEPPSYK 609
           SA  LLR I+ +EGP ALYRGM APLASV FQNAMVFQVYA+LSR+ D   + SEPPSY 
Sbjct: 61  SAVALLRGILRAEGPAALYRGMGAPLASVAFQNAMVFQVYAILSRSLDRRMSTSEPPSYT 120

Query: 608 SVALGGVGTGALQSLLLSPVELVKIRLQLQTVNQQHYSKGPLGVAKDIFRREGMRGMYRG 429
           SVAL GVGTGALQ+L+LSPVEL+KIRLQL+   Q+H  +GP+ +A+DI RREGM G+YRG
Sbjct: 121 SVALAGVGTGALQTLILSPVELIKIRLQLEEAGQKH--RGPVDMARDIMRREGMHGIYRG 178

Query: 428 LTITVLRDAPAHGVYFWTYEYAREKLHPGCRKSGQESVKTMLXXXXXXXXXSWACCYPLD 249
           LT+T LRDAP+HGVYFWTYEYARE+LHPGCR++GQES+ TML         SW CCYPLD
Sbjct: 179 LTVTALRDAPSHGVYFWTYEYARERLHPGCRRTGQESLATMLVSGGLAGVASWVCCYPLD 238

Query: 248 VVKSRLQAQSQASLDHPKPKYNGILDCFRKSVQEEGYCVLWRGLGTAVTRAFLVNGAVFA 69
           VVKSRLQAQ+Q     P P+Y G+ DCFRKSV+EEG+ VLWRGLGTAV RAF+VNGA+F+
Sbjct: 239 VVKSRLQAQTQT--HPPSPRYRGVADCFRKSVREEGFPVLWRGLGTAVARAFVVNGAIFS 296

Query: 68  AYEITLRCLFNNN 30
           AYE+ LR L  NN
Sbjct: 297 AYELALRFLVRNN 309


Top