BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00003434
         (1486 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ33886.1| unnamed protein product [Thellungiella halophila]     680   0.0  
ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana] gi|7...   673   0.0  
ref|XP_002889743.1| catalytic/ coenzyme binding protein [Arabido...   672   0.0  
gb|AAL32648.1| g5bf protein [Arabidopsis thaliana]                    672   0.0  
emb|CAA71589.1| g5bf [Arabidopsis thaliana]                           671   0.0  

>dbj|BAJ33886.1| unnamed protein product [Thellungiella halophila]
          Length = 379

 Score =  680 bits (1755), Expect = 0.0
 Identities = 329/380 (86%), Positives = 361/380 (95%)
 Frame = +3

Query: 174  MAKVVVLQQSQLAFSLPPSSLSDFNGIRLNQPIQYNRKVWQKPRGALQVTATSAKKILIM 353
            MAK+++LQQSQ +FSL  SSLSDFNG +L+  +QY RKV+Q P+GAL V+A+S KKILIM
Sbjct: 1    MAKIMMLQQSQPSFSLLTSSLSDFNGAKLHLQVQYKRKVYQ-PKGALYVSASSEKKILIM 59

Query: 354  GGTRFIGVFLSRLLIKEGHQVTLFTRGKSPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 533
            GGTRFIGVFLSRLL+KEGHQVTLFTRGKSPIA+QLPGES++DF+DFSSKILHLKGDRKDY
Sbjct: 60   GGTRFIGVFLSRLLVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119

Query: 534  DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHFETD 713
            DFVK+SL+AEGFDVVYDINGREAEEVEPI+DALPKLEQYIYCSSAGVYLKSD+LPH E D
Sbjct: 120  DFVKSSLSAEGFDVVYDINGREAEEVEPIIDALPKLEQYIYCSSAGVYLKSDILPHCEVD 179

Query: 714  AVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 893
            AVDPKSRHKGKLETESLLQSK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PN
Sbjct: 180  AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239

Query: 894  SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEL 1073
            SG+QI+QLGHVKDLATAF+ VLGNEKAS++IFNISGEKY+TFDGLA+ACAKA GFPEPE+
Sbjct: 240  SGIQISQLGHVKDLATAFLAVLGNEKASREIFNISGEKYITFDGLARACAKAGGFPEPEI 299

Query: 1074 IHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLIEGLADSYNLDFGRGTFR 1253
            +HYNPKEFDFGKKKAFPFRDQHFFASV+KAK VLGWKPEFDL+EGL DSYNLDFGRGTFR
Sbjct: 300  VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359

Query: 1254 KEADFTTDDMILEKSLVLQS 1313
            KEADFTTDDMIL K LVLQS
Sbjct: 360  KEADFTTDDMILSKKLVLQS 379


>ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana]
            gi|75313128|sp|Q9SA52.1|CP41B_ARATH RecName:
            Full=Chloroplast stem-loop binding protein of 41 kDa b,
            chloroplastic; Short=CSP41-b; AltName:
            Full=Heteroglycan-interacting protein 1.3; AltName:
            Full=Protein CHLOROPLAST RNA BINDING; AltName:
            Full=Protein Gb5f; Flags: Precursor
            gi|11762234|gb|AAG40395.1|AF325043_1 At1g09340
            [Arabidopsis thaliana]
            gi|16226247|gb|AAL16114.1|AF428282_1 At1g09340/T31J12_6
            [Arabidopsis thaliana] gi|4337177|gb|AAD18098.1|
            Identical to gb|Y10557 g5bf gene from Arabidopsis
            thaliana. ESTs gb|R30578, gb|R90475, gb|T22384,
            gb|T22425, gb|N64934 and gb|T46767 come from this gene
            [Arabidopsis thaliana] gi|14334754|gb|AAK59555.1|
            putative RNA-binding protein [Arabidopsis thaliana]
            gi|17979099|gb|AAL47493.1| putative RNA-binding protein
            [Arabidopsis thaliana] gi|332190310|gb|AEE28431.1| RNA
            binding protein [Arabidopsis thaliana]
          Length = 378

 Score =  673 bits (1737), Expect = 0.0
 Identities = 327/379 (86%), Positives = 358/379 (94%)
 Frame = +3

Query: 174  MAKVVVLQQSQLAFSLPPSSLSDFNGIRLNQPIQYNRKVWQKPRGALQVTATSAKKILIM 353
            MAK+++LQQ Q +FSL  SSLSDFNG +L+  +QY RKV Q P+GAL V+A+S KKILIM
Sbjct: 1    MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQ-PKGALYVSASSEKKILIM 59

Query: 354  GGTRFIGVFLSRLLIKEGHQVTLFTRGKSPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 533
            GGTRFIG+FLSR+L+KEGHQVTLFTRGKSPIA+QLPGES++DF+DFSSKILHLKGDRKDY
Sbjct: 60   GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119

Query: 534  DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHFETD 713
            DFVK+SL+AEGFDVVYDINGREAEEVEPIL+ALPKLEQYIYCSSAGVYLKSD+LPH E D
Sbjct: 120  DFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEED 179

Query: 714  AVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 893
            AVDPKSRHKGKLETESLLQSK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PN
Sbjct: 180  AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239

Query: 894  SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEL 1073
            SG+QI+QLGHVKDLATAF+ VLGNEKAS++IFNISGEKYVTFDGLAKACAKA GFPEPE+
Sbjct: 240  SGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299

Query: 1074 IHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLIEGLADSYNLDFGRGTFR 1253
            +HYNPKEFDFGKKKAFPFRDQHFFASV+KAK VLGWKPEFDL+EGL DSYNLDFGRGTFR
Sbjct: 300  VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359

Query: 1254 KEADFTTDDMILEKSLVLQ 1310
            KEADFTTDDMIL K LVLQ
Sbjct: 360  KEADFTTDDMILSKKLVLQ 378


>ref|XP_002889743.1| catalytic/ coenzyme binding protein [Arabidopsis lyrata subsp.
            lyrata] gi|297335585|gb|EFH66002.1| catalytic/ coenzyme
            binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 378

 Score =  672 bits (1733), Expect = 0.0
 Identities = 326/379 (86%), Positives = 356/379 (93%)
 Frame = +3

Query: 174  MAKVVVLQQSQLAFSLPPSSLSDFNGIRLNQPIQYNRKVWQKPRGALQVTATSAKKILIM 353
            MAK+++LQQ Q +FSL  SSLSDFNG +L+  +QY RKV Q P+GAL V+A+S KKILIM
Sbjct: 1    MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQ-PKGALHVSASSEKKILIM 59

Query: 354  GGTRFIGVFLSRLLIKEGHQVTLFTRGKSPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 533
            GGTRFIGVFLSRLL+K GHQVTLFTRGKSPIA+QLPGES++DF+DFSSKILHLKGDRKDY
Sbjct: 60   GGTRFIGVFLSRLLVKGGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119

Query: 534  DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHFETD 713
            DFVK+SL+AEGFDVVYDINGREAEEVEPI+DALPKLEQYIYCSSAGVYLKSD+LPH E D
Sbjct: 120  DFVKSSLSAEGFDVVYDINGREAEEVEPIIDALPKLEQYIYCSSAGVYLKSDILPHCEED 179

Query: 714  AVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 893
            AVDPKSRHKGKLETESLLQSK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PN
Sbjct: 180  AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239

Query: 894  SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEL 1073
            SG+QI+QLGHVKDL TAF+ VLGNEKAS++IFNISGEKYVTFDGLAKACAKA GFPEPE+
Sbjct: 240  SGIQISQLGHVKDLGTAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299

Query: 1074 IHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLIEGLADSYNLDFGRGTFR 1253
            +HYNPKEFDFGKKKAFPFRDQHFFASV+KAK VLGWKPEFDL+EGL DSYNLDFGRGTFR
Sbjct: 300  VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359

Query: 1254 KEADFTTDDMILEKSLVLQ 1310
            KEADFTTDDM+L K LVLQ
Sbjct: 360  KEADFTTDDMVLSKKLVLQ 378


>gb|AAL32648.1| g5bf protein [Arabidopsis thaliana]
          Length = 378

 Score =  672 bits (1733), Expect = 0.0
 Identities = 326/379 (86%), Positives = 358/379 (94%)
 Frame = +3

Query: 174  MAKVVVLQQSQLAFSLPPSSLSDFNGIRLNQPIQYNRKVWQKPRGALQVTATSAKKILIM 353
            MAK+++LQQ Q +FSL  SSLSDFNG +L+  +QY RKV Q P+GAL V+A+S KKILIM
Sbjct: 1    MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQ-PKGALYVSASSEKKILIM 59

Query: 354  GGTRFIGVFLSRLLIKEGHQVTLFTRGKSPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 533
            GGTRFIG+FLSR+L+KEGHQVTLFTRGKSPIA+QLPGES++DF+DFSSKILHLKGDRKDY
Sbjct: 60   GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119

Query: 534  DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHFETD 713
            DFVK+SL+AEGFDVVYDINGREAEEVEPIL+ALPKLEQYIYCSSAGVYLKSD+LPH E D
Sbjct: 120  DFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEED 179

Query: 714  AVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 893
            AVDPKSRHKGKLETESLLQSK VNWTSIRPVYIYGPLNYNPVE+WFFHRLKAGRPIP+PN
Sbjct: 180  AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEKWFFHRLKAGRPIPVPN 239

Query: 894  SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEL 1073
            SG+QI+QLGHVKDLATAF+ VLGNEKAS++IFNISGEKYVTFDGLAKACAKA GFPEPE+
Sbjct: 240  SGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299

Query: 1074 IHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLIEGLADSYNLDFGRGTFR 1253
            +HYNPKEFDFGKKKAFPFRDQHFFASV+KAK VLGWKPEFDL+EGL DSYNLDFGRGTFR
Sbjct: 300  VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359

Query: 1254 KEADFTTDDMILEKSLVLQ 1310
            KEADFTTDDMIL K LVLQ
Sbjct: 360  KEADFTTDDMILSKKLVLQ 378


>emb|CAA71589.1| g5bf [Arabidopsis thaliana]
          Length = 378

 Score =  671 bits (1731), Expect = 0.0
 Identities = 326/379 (86%), Positives = 357/379 (94%)
 Frame = +3

Query: 174  MAKVVVLQQSQLAFSLPPSSLSDFNGIRLNQPIQYNRKVWQKPRGALQVTATSAKKILIM 353
            MAK+++LQQ Q +FSL  SSLSDFNG +L+  +QY RKV Q P+GAL V+A+S KKILIM
Sbjct: 1    MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQ-PKGALYVSASSEKKILIM 59

Query: 354  GGTRFIGVFLSRLLIKEGHQVTLFTRGKSPIAQQLPGESEKDFSDFSSKILHLKGDRKDY 533
            GGTRFIG+FLSR+L+KEGHQVTLFTRGKSPIA+QLPGES++DF+DFSSKILHLKGDRKDY
Sbjct: 60   GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDY 119

Query: 534  DFVKTSLAAEGFDVVYDINGREAEEVEPILDALPKLEQYIYCSSAGVYLKSDLLPHFETD 713
            DFVK+SL+AEGFDVVYDINGREAEEVEPIL+ALPKLEQYIYCSSAGVYLK D+LPH E D
Sbjct: 120  DFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKFDILPHCEED 179

Query: 714  AVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 893
            AVDPKSRHKGKLETESLLQSK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PN
Sbjct: 180  AVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPN 239

Query: 894  SGVQITQLGHVKDLATAFIQVLGNEKASKQIFNISGEKYVTFDGLAKACAKAAGFPEPEL 1073
            SG+QI+QLGHVKDLATAF+ VLGNEKAS++IFNISGEKYVTFDGLAKACAKA GFPEPE+
Sbjct: 240  SGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEI 299

Query: 1074 IHYNPKEFDFGKKKAFPFRDQHFFASVDKAKSVLGWKPEFDLIEGLADSYNLDFGRGTFR 1253
            +HYNPKEFDFGKKKAFPFRDQHFFASV+KAK VLGWKPEFDL+EGL DSYNLDFGRGTFR
Sbjct: 300  VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFR 359

Query: 1254 KEADFTTDDMILEKSLVLQ 1310
            KEADFTTDDMIL K LVLQ
Sbjct: 360  KEADFTTDDMILSKKLVLQ 378