BLASTX nr result
ID: Cimicifuga21_contig00003390
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cimicifuga21_contig00003390 (2104 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI40152.3| unnamed protein product [Vitis vinifera] 297 9e-78 ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 297 9e-78 ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 292 2e-76 ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 291 4e-76 gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 288 3e-75 >emb|CBI40152.3| unnamed protein product [Vitis vinifera] Length = 1890 Score = 297 bits (760), Expect = 9e-78 Identities = 195/505 (38%), Positives = 268/505 (53%), Gaps = 33/505 (6%) Frame = +1 Query: 340 ENHSTKASQESTKSAGW------------NTV--ETQKQSPQSA-----HGDGWENRAAT 462 + ST+ ES++SAGW NT T + SP+S+ DG A++ Sbjct: 1412 DTFSTREPDESSRSAGWDDKGTWGTDKAQNTAFRRTHEDSPRSSGRDETFRDGRPQFASS 1471 Query: 463 QWGQSVKS------NVNDYKKSSAESSRSGDWNSLKSQETSQMEPCGTSGRTIEETKSSA 624 WG+ + N ND K + S DW+ +QE +T + T Sbjct: 1472 AWGKKIDEADKTGWNKNDGKPQMDKLRESYDWDCKVAQE-----------KTTQST---- 1516 Query: 625 WXXXXXXXXXXXXLGWDSPSATGWSKDDNERELSRDNWGKTAEETKSSSDWSQHEQVNRP 804 G S + W K++ + E+ + + E + ++ + + + Sbjct: 1517 -------------YGGISSTTGDWKKNELQMEVVQHDESPVNEHSWDAN--LPEDPLAQA 1561 Query: 805 TSATGWTGGNGKTLDEKERRDLSSDDAWGKKSETKSSNEWSQREQVNQSTSSLGWDAHEQ 984 T++ GW GK W K+ S + QR+ +S SS EQ Sbjct: 1562 TTSVGWDSSTGKD--------------WTKRKLQSPSEQ--QRDPAIKSWSSSHNVMKEQ 1605 Query: 985 VNQTTSSFGWNSQSATDWTEKGQTQNEQEKRESPCDAWGKKAETKPSSEWSQREQVNQST 1164 NQ S+ GW+S A W + + Q++ +R S K +++ S W + NQ Sbjct: 1606 SNQPASTHGWDSPGAKGWNDV-EEQSQWNQRGSAV----KNDQSESSHGWGPSNEQNQLP 1660 Query: 1165 SSLGWGSPSA-TGWTGDTQDEQERNLPWGR--GKK---QSGRGWGSSNSGDWK-LKNRPA 1323 SS GWGSP+A G +TQ + WG+ GKK + RGWGS+N+ +WK KNRP Sbjct: 1661 SSQGWGSPNAGAGHESETQSQ------WGQPSGKKSRPEGSRGWGSNNT-EWKNKKNRPN 1713 Query: 1324 RSPGRF-DDRNARGNFTPTRSRLDQYTPEEQKVYSEVDPIMQSLRRIMHQSGKNDGDPLS 1500 + G DD +A G FT TR R+D +T EEQ + +V+PIMQS+RRIMHQ+G NDGDPLS Sbjct: 1714 KPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLS 1773 Query: 1501 PEDQSYVLDNVFNYHPDKAVKMGAGIDYVMVSKHSSFQETRCFYIVSTDGRKEDFSYRKC 1680 +DQSY+LD VFN HPDKAVKMG GIDYVMVS+HSSF E+RCFY+VSTDG KEDFSYRKC Sbjct: 1774 ADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKC 1833 Query: 1681 MENLVKEKYSELAESFNGKYFRKPR 1755 +EN +KEKY + AE+F GKYFR+PR Sbjct: 1834 LENFIKEKYPDNAETFIGKYFRRPR 1858 >ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera] Length = 1830 Score = 297 bits (760), Expect = 9e-78 Identities = 195/505 (38%), Positives = 268/505 (53%), Gaps = 33/505 (6%) Frame = +1 Query: 340 ENHSTKASQESTKSAGW------------NTV--ETQKQSPQSA-----HGDGWENRAAT 462 + ST+ ES++SAGW NT T + SP+S+ DG A++ Sbjct: 1352 DTFSTREPDESSRSAGWDDKGTWGTDKAQNTAFRRTHEDSPRSSGRDETFRDGRPQFASS 1411 Query: 463 QWGQSVKS------NVNDYKKSSAESSRSGDWNSLKSQETSQMEPCGTSGRTIEETKSSA 624 WG+ + N ND K + S DW+ +QE +T + T Sbjct: 1412 AWGKKIDEADKTGWNKNDGKPQMDKLRESYDWDCKVAQE-----------KTTQST---- 1456 Query: 625 WXXXXXXXXXXXXLGWDSPSATGWSKDDNERELSRDNWGKTAEETKSSSDWSQHEQVNRP 804 G S + W K++ + E+ + + E + ++ + + + Sbjct: 1457 -------------YGGISSTTGDWKKNELQMEVVQHDESPVNEHSWDAN--LPEDPLAQA 1501 Query: 805 TSATGWTGGNGKTLDEKERRDLSSDDAWGKKSETKSSNEWSQREQVNQSTSSLGWDAHEQ 984 T++ GW GK W K+ S + QR+ +S SS EQ Sbjct: 1502 TTSVGWDSSTGKD--------------WTKRKLQSPSEQ--QRDPAIKSWSSSHNVMKEQ 1545 Query: 985 VNQTTSSFGWNSQSATDWTEKGQTQNEQEKRESPCDAWGKKAETKPSSEWSQREQVNQST 1164 NQ S+ GW+S A W + + Q++ +R S K +++ S W + NQ Sbjct: 1546 SNQPASTHGWDSPGAKGWNDV-EEQSQWNQRGSAV----KNDQSESSHGWGPSNEQNQLP 1600 Query: 1165 SSLGWGSPSA-TGWTGDTQDEQERNLPWGR--GKK---QSGRGWGSSNSGDWK-LKNRPA 1323 SS GWGSP+A G +TQ + WG+ GKK + RGWGS+N+ +WK KNRP Sbjct: 1601 SSQGWGSPNAGAGHESETQSQ------WGQPSGKKSRPEGSRGWGSNNT-EWKNKKNRPN 1653 Query: 1324 RSPGRF-DDRNARGNFTPTRSRLDQYTPEEQKVYSEVDPIMQSLRRIMHQSGKNDGDPLS 1500 + G DD +A G FT TR R+D +T EEQ + +V+PIMQS+RRIMHQ+G NDGDPLS Sbjct: 1654 KPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLS 1713 Query: 1501 PEDQSYVLDNVFNYHPDKAVKMGAGIDYVMVSKHSSFQETRCFYIVSTDGRKEDFSYRKC 1680 +DQSY+LD VFN HPDKAVKMG GIDYVMVS+HSSF E+RCFY+VSTDG KEDFSYRKC Sbjct: 1714 ADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKC 1773 Query: 1681 MENLVKEKYSELAESFNGKYFRKPR 1755 +EN +KEKY + AE+F GKYFR+PR Sbjct: 1774 LENFIKEKYPDNAETFIGKYFRRPR 1798 >ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit 1-like [Cucumis sativus] Length = 2019 Score = 292 bits (748), Expect = 2e-76 Identities = 208/643 (32%), Positives = 317/643 (49%), Gaps = 60/643 (9%) Frame = +1 Query: 7 QKLPSKEPVDAWGKEAGPAAGWNTTESQKPLSKEPVDTWGKETGTTAGWNIAESQKLPSK 186 +K PS V G + W + E+ K + + W +GW + Sbjct: 1375 EKAPSLGAVSTGGGQ------WESNENGKATNSSDGNDW-------SGWGRKAEPDVTVT 1421 Query: 187 EPVDAWDTSGWDQKLPSKEPVDAWG-KQTGESHTSDWDKNASSERGYWNGSHENHSTKAS 363 + S WD +WG K T S+ +DW ++ E E S + Sbjct: 1422 NAQENTSNSAWDT-------TSSWGNKATNSSNDNDWSNCSTKEV-------ERDSFTSM 1467 Query: 364 QESTKSAGWNTVETQKQSPQSAHGDGWENRAA----TQWG--QSVKSNVND-YKKSSAES 522 +++ KS GW++ T + D ++ A +QW Q K+ D + K + + Sbjct: 1468 EKTPKSGGWDSASTWGTKTKD---DSFKRETAPKKSSQWSGLQKDKAETQDAFHKKAEMA 1524 Query: 523 SRSGDWN-------SLKSQE--TSQMEPCGTSGRTIEETKSSAWXXXXXXXXXXXXLGWD 675 S+SG W + K+++ +SQ++ S + + SS G D Sbjct: 1525 SKSGGWEDKAWSRGTSKTEDNWSSQVKDKAESFQVQVQEVSSKTNGWGSTGGWTKNSGGD 1584 Query: 676 SPSATGWS--KDDNERELSRDNWGKTAE---ETKSSSDWSQ----HEQVNRPTSATGWTG 828 S GW+ + +RE D W + A E+ +S W + + P+ A + Sbjct: 1585 HQSEAGWNDGQASMDREKVSDRWDRKATQKLESHQTSSWGSPTVGDSKDSFPSKAVDHSD 1644 Query: 829 GNGKTLDEKERRDLSS----DDAWGKKSE------TKSSNE-----WSQREQVNQSTSSL 963 ++++ +S +DAWG++ + ++NE W + + N+ S Sbjct: 1645 SVVNHSWDRQKSPEASQGFGNDAWGQQKSRDVIKPSLANNESNLSGWGSQIESNEG-SDH 1703 Query: 964 GWDAHEQVNQTTSSFGWNSQSATD--WTEKGQTQNEQE--KRESPCDAWGKKAETKPSSE 1131 G+D +++ + GW+SQ TD W ++ + Q + +WG+ + S E Sbjct: 1704 GFDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSLEASQSWGSQNDSLGSWGQPQ--RASEE 1761 Query: 1132 WSQREQVNQST---------SSLGWG---SPSATGWTGDTQDEQERNLPWGRGKKQSG-R 1272 S+ Q + ST +SLGW SP + G ++ E+ G KK G + Sbjct: 1762 CSRESQDDSSTQFSQLKPPETSLGWEQQKSPEVSHGWGSNKESSEQTSSHGWDKKNQGSK 1821 Query: 1273 GWGSSNSGDWK-LKNRPARSPGRF-DDRNARGNFTPTRSRLDQYTPEEQKVYSEVDPIMQ 1446 GWG N+G+WK KNRP +SPG DD N R +T + RLD +T EEQ + ++++PIMQ Sbjct: 1822 GWGG-NAGEWKNRKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQ 1880 Query: 1447 SLRRIMHQSGKNDGDPLSPEDQSYVLDNVFNYHPDKAVKMGAGIDYVMVSKHSSFQETRC 1626 S+R++MHQSG NDGDPLS EDQS+VL +VFN+HPDKA KMGAGID+ MVS+HSSFQE+RC Sbjct: 1881 SIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRC 1940 Query: 1627 FYIVSTDGRKEDFSYRKCMENLVKEKYSELAESFNGKYFRKPR 1755 FY+V+TDG KEDFSYRKC++N +K KY +LAE F KYFRKPR Sbjct: 1941 FYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPR 1983 >ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis sativus] Length = 1959 Score = 291 bits (746), Expect = 4e-76 Identities = 208/643 (32%), Positives = 317/643 (49%), Gaps = 60/643 (9%) Frame = +1 Query: 7 QKLPSKEPVDAWGKEAGPAAGWNTTESQKPLSKEPVDTWGKETGTTAGWNIAESQKLPSK 186 +K PS V G + W + E+ K + + W +GW + Sbjct: 1315 EKAPSLGAVSTGGGQ------WESNENGKATNSSDGNDW-------SGWGRKAEPDVTVT 1361 Query: 187 EPVDAWDTSGWDQKLPSKEPVDAWG-KQTGESHTSDWDKNASSERGYWNGSHENHSTKAS 363 + S WD +WG K T S+ +DW ++ E E S + Sbjct: 1362 NAQENTSNSAWDT-------TSSWGNKATNSSNDNDWSNCSTKEV-------ERDSFTSM 1407 Query: 364 QESTKSAGWNTVETQKQSPQSAHGDGWENRAA----TQWG--QSVKSNVND-YKKSSAES 522 +++ KS GW++ T + D ++ A +QW Q K+ D + K + + Sbjct: 1408 EKTPKSGGWDSASTWGTKTKD---DSFKRETAPKKSSQWSGLQKDKAETQDAFHKKAEMA 1464 Query: 523 SRSGDWN-------SLKSQE--TSQMEPCGTSGRTIEETKSSAWXXXXXXXXXXXXLGWD 675 S+SG W + K+++ +SQ++ S + + SS G D Sbjct: 1465 SKSGGWEDKAWSRGTSKTEDNWSSQVKDKAESFQVQVQEVSSKTNGWGSTGGWTKNSGGD 1524 Query: 676 SPSATGWS--KDDNERELSRDNWGKTAE---ETKSSSDWSQ----HEQVNRPTSATGWTG 828 S GW+ + +RE D W + A E+ +S W + + P+ A + Sbjct: 1525 HQSEAGWNDGQASMDREKVSDRWDRKATQKLESHQTSSWGSPTVGDSKDSFPSKAVDHSD 1584 Query: 829 GNGKTLDEKERRDLSS----DDAWGKKSE------TKSSNE-----WSQREQVNQSTSSL 963 ++++ +S +DAWG++ + ++NE W + + N+ S Sbjct: 1585 SVVNHSWDRQKSPEASQGFGNDAWGQQKSRDVIKPSLANNESNLSGWGSQIESNEG-SDH 1643 Query: 964 GWDAHEQVNQTTSSFGWNSQSATD--WTEKGQTQNEQE--KRESPCDAWGKKAETKPSSE 1131 G+D +++ + GW+SQ TD W ++ + Q + +WG+ + S E Sbjct: 1644 GFDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSLEASQSWGSQNDSLGSWGQPQ--RASEE 1701 Query: 1132 WSQREQVNQST---------SSLGWG---SPSATGWTGDTQDEQERNLPWGRGKKQSG-R 1272 S+ Q + ST +SLGW SP + G ++ E+ G KK G + Sbjct: 1702 CSRESQDDSSTQFSQLKPPETSLGWEQQKSPEVSHGWGSHKESSEQTSSHGWDKKNQGSK 1761 Query: 1273 GWGSSNSGDWK-LKNRPARSPGRF-DDRNARGNFTPTRSRLDQYTPEEQKVYSEVDPIMQ 1446 GWG N+G+WK KNRP +SPG DD N R +T + RLD +T EEQ + ++++PIMQ Sbjct: 1762 GWGG-NAGEWKNRKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQ 1820 Query: 1447 SLRRIMHQSGKNDGDPLSPEDQSYVLDNVFNYHPDKAVKMGAGIDYVMVSKHSSFQETRC 1626 S+R++MHQSG NDGDPLS EDQS+VL +VFN+HPDKA KMGAGID+ MVS+HSSFQE+RC Sbjct: 1821 SIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRC 1880 Query: 1627 FYIVSTDGRKEDFSYRKCMENLVKEKYSELAESFNGKYFRKPR 1755 FY+V+TDG KEDFSYRKC++N +K KY +LAE F KYFRKPR Sbjct: 1881 FYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPR 1923 >gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea] Length = 1902 Score = 288 bits (738), Expect = 3e-75 Identities = 211/654 (32%), Positives = 288/654 (44%), Gaps = 78/654 (11%) Frame = +1 Query: 22 KEPVDAWG--KEAGPAAGWNTTESQKPLSKEPVDTWGKETGTTAGWNIAESQKLPSKEPV 195 K+P AWG K+ GW ++S+K L+ V E G +GW K +P Sbjct: 1257 KDPSSAWGAGKKTDDNNGWKKSDSKKDLASGSV-----EDGGCSGWG----PKKDLLQPE 1307 Query: 196 DAWDTSGWD-QKLPSKEPVDAWGKQTGESHTSDWDKN---ASSER----GYWNGS--HEN 345 D+ +GW K SKEP AWGK E+ W KN SE WN EN Sbjct: 1308 DSAGENGWGASKSKSKEPSSAWGKPAQETDNIGWKKNNPQRDSENLEGTSGWNDKLQKEN 1367 Query: 346 HSTKASQESTKSAGWNT--------------------------VETQKQSPQSAHGDGWE 447 S + S W++ V +K + G+ W+ Sbjct: 1368 KSFSKQSQPASSKDWDSTGNITAGSTGFGVEKGNEKPWDVASNVSVKKSTWGQTGGNSWK 1427 Query: 448 NRAATQ---------WGQSVKSNV-------NDYKKSSAESSRSG---DWNSLKSQETSQ 570 + WG+S KS+ N + S S + G W + Sbjct: 1428 KNEQDEKDGDPQGLPWGKSHKSSDSWTSGQGNQHPVSQGVSEKQGTLSSWGQPRDSSQKN 1487 Query: 571 MEPCGTSGRTIEETKSSAWXXXXXXXXXXXXLGWDSPSATGWSKDDNERELSRDN----- 735 G S + +W W + W R + N Sbjct: 1488 NNENGVSSNFNRQGAGKSWDSKKKESNVQS--SWAQQGDSTWKDSKEARSSVKANNSTNS 1545 Query: 736 --W--GKTAEETKSSSDWSQHEQVNRPTSATGWTGGNGKTLDEKERRDLSSDDAWGKKSE 903 W GK + SSS SQ E +P S G D KE LSS DA KK E Sbjct: 1546 GGWSTGKALVDGVSSSWGSQKEDRPQPKSNDRSVGDGNFDKDAKEE-GLSSWDA--KKVE 1602 Query: 904 TKSSNEWSQ-REQVNQSTSSLGWDAHEQVNQTTSSFGWNSQSATDWTEKGQTQNEQEKRE 1080 K+ + W Q E N + SS ++ NQ S GW S+ T G+ +Q Sbjct: 1603 RKTQSSWGQPSESKNSAQSSADHWGSDKSNQPGKSSGWGSED----TNAGKDSEKQ---- 1654 Query: 1081 SPCDAWGKKAETKPSSEWSQREQVNQSTSSLGWGSPSATGWTGDTQDEQERNLPWGRGKK 1260 D+WGK + E ++ + + S WG P +GW + + Sbjct: 1655 ---DSWGKSNVSTWKKESGEKLHGSDDSQS-PWGQPGGSGWN--------------KKQP 1696 Query: 1261 QSGRGWGSSNSGDWKLK-----------NRPARSPGRFDDRNARGNFTPTRSRLDQYTPE 1407 + GRGWGSSN+G+WK + NRP R P +D + R T TR R+D++ E Sbjct: 1697 EGGRGWGSSNTGEWKSRKNQNQNQNQNQNRPPRGP---NDDSPRVALTATRKRMDEFPTE 1753 Query: 1408 EQKVYSEVDPIMQSLRRIMHQSGKNDGDPLSPEDQSYVLDNVFNYHPDKAVKMGAGIDYV 1587 E+ V SEV+ +MQS+RRIMHQSG DG+PL P+DQ+Y++DN+ NYHPDKA K+GAG+D++ Sbjct: 1754 EKDVLSEVESLMQSIRRIMHQSGCVDGEPLLPDDQTYLIDNILNYHPDKAAKIGAGVDFI 1813 Query: 1588 MVSKHSSFQETRCFYIVSTDGRKEDFSYRKCMENLVKEKYSELAESFNGKYFRK 1749 V KHS+FQE+RCFY+VSTDG+ DFSY KC+E VK KY +AESF KYFR+ Sbjct: 1814 TVKKHSNFQESRCFYVVSTDGKDTDFSYIKCIETFVKGKYPSVAESFTSKYFRR 1867 Score = 75.5 bits (184), Expect = 5e-11 Identities = 84/369 (22%), Positives = 137/369 (37%), Gaps = 42/369 (11%) Frame = +1 Query: 286 SDWDKNASSERGYWNGSHENHSTKASQESTKSAGWNTVETQKQSPQSAHGDGWENRAATQ 465 S WD SS G WN + + + +++ S W + + Q S+ GW + + Q Sbjct: 1111 SSWDAFPSSGTG-WNANKIDTGSGSAEGGWSS--WGSKKDQANPEDSSKTGGWSSGGSKQ 1167 Query: 466 WGQSVKSNVNDYKKSSAESSRSGDWNSLKSQETS-QMEPCGTSGRTIEETKSSAWXXXXX 642 K +SS+SG W++ KS S Q +P G+ ++ T + Sbjct: 1168 ------------KPQPEDSSKSGGWDASKSWGGSNQGDPSPVWGQPVKATNDISIENDH- 1214 Query: 643 XXXXXXXLGWDSPSATGWSKDDNERELSRDNWGKTAEETKSSSDWSQHEQVNRPTSATG- 819 G S GW+ +++LS+ TA +S WS + + P+SA G Sbjct: 1215 --------GSGSAEGGGWANSGMKKDLSKQENSSTAGGWDASKSWSGSKPKD-PSSAWGA 1265 Query: 820 --WTGGNGKTLDEKERRDLSSD-------DAWGKK------SETKSSNEWSQREQVNQST 954 T N ++DL+S WG K ++ N W + ++ Sbjct: 1266 GKKTDDNNGWKKSDSKKDLASGSVEDGGCSGWGPKKDLLQPEDSAGENGWGASKSKSKEP 1325 Query: 955 SSLGWDAHEQVNQTTSSFGW----------NSQSATDWTEKGQTQNEQ-EKRESPCDA-- 1095 SS A + Q T + GW N + + W +K Q +N+ K+ P + Sbjct: 1326 SS----AWGKPAQETDNIGWKKNNPQRDSENLEGTSGWNDKLQKENKSFSKQSQPASSKD 1381 Query: 1096 WGKKAETKPSSEWSQREQVNQ---------STSSLGWGSPSATGWTGDTQDEQE---RNL 1239 W S E+ N+ S WG W + QDE++ + L Sbjct: 1382 WDSTGNITAGSTGFGVEKGNEKPWDVASNVSVKKSTWGQTGGNSWKKNEQDEKDGDPQGL 1441 Query: 1240 PWGRGKKQS 1266 PWG+ K S Sbjct: 1442 PWGKSHKSS 1450