BLASTX nr result
ID: Cimicifuga21_contig00003388
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00003388
(366 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002314384.1| predicted protein [Populus trichocarpa] gi|2... 114 8e-24
ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 112 4e-23
ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containi... 112 4e-23
ref|XP_002516925.1| pentatricopeptide repeat-containing protein,... 110 1e-22
ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containi... 100 1e-19
>ref|XP_002314384.1| predicted protein [Populus trichocarpa] gi|222863424|gb|EEF00555.1|
predicted protein [Populus trichocarpa]
Length = 764
Score = 114 bits (285), Expect = 8e-24
Identities = 54/66 (81%), Positives = 58/66 (87%)
Frame = +2
Query: 77 RSYCIFIHSLVKAGCARETYELFYAMYEQGCLMDTRAYNTVIDGFCKSGKVNNAYQLLEE 256
RSY I IHSLVKAG ARETYEL+YAM +QGC++DTRAYNTVIDGFCKSGKVN AYQLLEE
Sbjct: 446 RSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE 505
Query: 257 MKVKRH 274
MK H
Sbjct: 506 MKTMGH 511
Score = 74.7 bits (182), Expect = 7e-12
Identities = 55/129 (42%), Positives = 75/129 (58%), Gaps = 7/129 (5%)
Frame = +1
Query: 1 VFKAGETEKGRALIEENTSK--IEDSRA*LLYFHSQPGKSWLC-TRNLRVIL----CNVR 159
VFKAGETEKGRAL EE ++ + D+R+ + HS + T L + C +
Sbjct: 420 VFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLD 479
Query: 160 TRMSHGYSCL*HSHRRVLQVRKSKQRIPAIGGNEG*ASSPTVVTYGTVIDGLAKVDRLDE 339
TR Y+ + + +V K+ Q + + + PTVVTYG+V+DGLAK+DRLDE
Sbjct: 480 TR---AYNTVIDGFCKSGKVNKAYQLLEEM---KTMGHHPTVVTYGSVVDGLAKIDRLDE 533
Query: 340 AYMLFEEAK 366
AYMLFEEAK
Sbjct: 534 AYMLFEEAK 542
>ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 112 bits (279), Expect = 4e-23
Identities = 53/66 (80%), Positives = 55/66 (83%)
Frame = +2
Query: 77 RSYCIFIHSLVKAGCARETYELFYAMYEQGCLMDTRAYNTVIDGFCKSGKVNNAYQLLEE 256
RSY I IH LVKAG A E YELFY M EQGC++DTRAYNTVIDGFCKSGKVN AYQLLEE
Sbjct: 585 RSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE 644
Query: 257 MKVKRH 274
MK K H
Sbjct: 645 MKTKGH 650
Score = 73.9 bits (180), Expect = 1e-11
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Frame = +1
Query: 1 VFKAGETEKGRALIEE--NTSKIEDSRA*LLYFHSQ-----PGKSWLCTRNLRVILCNVR 159
VFKAGE EKGRAL +E N I D+R+ + H +++ ++ C +
Sbjct: 559 VFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLD 618
Query: 160 TRMSHGYSCL*HSHRRVLQVRKSKQRIPAIGGNEG*ASSPTVVTYGTVIDGLAKVDRLDE 339
TR Y+ + + +V K+ Q + + PTVVTYG+VIDGLAK+DRLDE
Sbjct: 619 TR---AYNTVIDGFCKSGKVNKAYQLLEEMKTK---GHEPTVVTYGSVIDGLAKIDRLDE 672
Query: 340 AYMLFEEAK 366
AYMLFEEAK
Sbjct: 673 AYMLFEEAK 681
>ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 112 bits (279), Expect = 4e-23
Identities = 53/66 (80%), Positives = 55/66 (83%)
Frame = +2
Query: 77 RSYCIFIHSLVKAGCARETYELFYAMYEQGCLMDTRAYNTVIDGFCKSGKVNNAYQLLEE 256
RSY I IH LVKAG A E YELFY M EQGC++DTRAYNTVIDGFCKSGKVN AYQLLEE
Sbjct: 585 RSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE 644
Query: 257 MKVKRH 274
MK K H
Sbjct: 645 MKTKGH 650
Score = 73.9 bits (180), Expect = 1e-11
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Frame = +1
Query: 1 VFKAGETEKGRALIEE--NTSKIEDSRA*LLYFHSQ-----PGKSWLCTRNLRVILCNVR 159
VFKAGE EKGRAL +E N I D+R+ + H +++ ++ C +
Sbjct: 559 VFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLD 618
Query: 160 TRMSHGYSCL*HSHRRVLQVRKSKQRIPAIGGNEG*ASSPTVVTYGTVIDGLAKVDRLDE 339
TR Y+ + + +V K+ Q + + PTVVTYG+VIDGLAK+DRLDE
Sbjct: 619 TR---AYNTVIDGFCKSGKVNKAYQLLEEMKTK---GHEPTVVTYGSVIDGLAKIDRLDE 672
Query: 340 AYMLFEEAK 366
AYMLFEEAK
Sbjct: 673 AYMLFEEAK 681
>ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544013|gb|EEF45539.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 901
Score = 110 bits (275), Expect = 1e-22
Identities = 53/65 (81%), Positives = 55/65 (84%)
Frame = +2
Query: 74 VRSYCIFIHSLVKAGCARETYELFYAMYEQGCLMDTRAYNTVIDGFCKSGKVNNAYQLLE 253
V SY I IH LVKAG ARETYELFYAM EQGC++DT AYNT IDGFCKSGKVN AYQLLE
Sbjct: 582 VMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLE 641
Query: 254 EMKVK 268
EMK K
Sbjct: 642 EMKTK 646
Score = 71.2 bits (173), Expect = 8e-11
Identities = 52/128 (40%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Frame = +1
Query: 1 VFKAGETEKGRALIEENTSK--IEDSRA*LLYFHSQPGKSWLCTRNLRVILCNVRTRM-- 168
VFKAGET KGRAL EE S+ I D + + H + R + ++ +
Sbjct: 557 VFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGF--ARETYELFYAMKEQGCV 614
Query: 169 --SHGYSCL*HSHRRVLQVRKSKQRIPAIGGNEG*ASSPTVVTYGTVIDGLAKVDRLDEA 342
+H Y+ + +V K+ Q + + PTVVTYG+VIDGLAK+DRLDEA
Sbjct: 615 LDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTK---GRQPTVVTYGSVIDGLAKIDRLDEA 671
Query: 343 YMLFEEAK 366
YMLFEEAK
Sbjct: 672 YMLFEEAK 679
>ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 100 bits (249), Expect = 1e-19
Identities = 48/65 (73%), Positives = 53/65 (81%)
Frame = +2
Query: 74 VRSYCIFIHSLVKAGCARETYELFYAMYEQGCLMDTRAYNTVIDGFCKSGKVNNAYQLLE 253
VRSY I IH LVK G +++TY+LFY M EQG +DTRAYN VIDGFCKSGKVN AYQLLE
Sbjct: 586 VRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLE 645
Query: 254 EMKVK 268
EMK K
Sbjct: 646 EMKTK 650
Score = 69.3 bits (168), Expect = 3e-10
Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 6/128 (4%)
Frame = +1
Query: 1 VFKAGETEKGRALIEENTSK--IEDSRA*LLYFHSQPGKSWLCTRNLRVILCNVRTRMSH 174
VFKAGE EKGRAL EE ++ D R+ + H + +++ + ++ + H
Sbjct: 561 VFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGF--SKDTYKLFYEMKEQGLH 618
Query: 175 ----GYSCL*HSHRRVLQVRKSKQRIPAIGGNEG*ASSPTVVTYGTVIDGLAKVDRLDEA 342
Y+ + + +V K+ Q + + PTVVTYG+VIDGLAK+DRLDEA
Sbjct: 619 LDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTK---GLQPTVVTYGSVIDGLAKIDRLDEA 675
Query: 343 YMLFEEAK 366
YMLFEEAK
Sbjct: 676 YMLFEEAK 683