BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00003226
         (1871 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine...   504   e-140
ref|XP_002311995.1| predicted protein [Populus trichocarpa] gi|2...   485   e-134
ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine...   476   e-131
emb|CBI31423.3| unnamed protein product [Vitis vinifera]              471   e-130
ref|XP_002879786.1| pseudouridine synthase family protein [Arabi...   467   e-129

>ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform
            1 [Vitis vinifera]
          Length = 393

 Score =  504 bits (1297), Expect = e-140
 Identities = 261/379 (68%), Positives = 298/379 (78%)
 Frame = +1

Query: 169  RKLKTLPLIHFSPICSSSTSTTEFNISFGXXXXXXXXXXXXXXXDQSPSISHLIPWIIRG 348
            R  +T+P+   S I   ST++ EFNISF                 QS ++  LIPWI+R 
Sbjct: 32   RHFRTIPVR--SSISPPSTTSAEFNISFAPKSKNPKP--------QSETL--LIPWIVRD 79

Query: 349  EDGNVKLQSTPPPQLLHTMANXXXXXXXXXXXXXXXXXXXXXXXVLTSEPKFSKAARRFY 528
            E+GN+++QSTPP + L  MA                         +  EPK+SKAARRFY
Sbjct: 80   ENGNLRVQSTPPERYLQDMAKAKALSAKKKKKKEESTAR-----AVAVEPKYSKAARRFY 134

Query: 529  NQKFRDPPQRLSKVLAAAGVASRRSSEELIFEGKVTVNGSVCNTPQTRVDPARDMIYVNG 708
            N+ FRDPPQRLSKVLAAAGVASRR+SEELIFEG+VTVNGSVCNTPQTRVDPARDMIYVNG
Sbjct: 135  NENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTRVDPARDMIYVNG 194

Query: 709  NRISKKLPPKVYLALNKPKGYICSNGEKESKSVMLLVDDYLKSWNRINPGFPKPRLFTVG 888
            NR+ KKLPPKVYLALNKPKGYICS+GEKESKSV+ L DDYLKSWN+ NPG PKPR+FTVG
Sbjct: 195  NRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQNPGVPKPRIFTVG 254

Query: 889  RLDVATSGLIIITNDGDFTQRISHPSSGLSKEYIAVIQGDVNKRHLIAISEGTSIEGVHC 1068
            RLDVAT+GLII+TNDGDF Q++SHPSS LSKEYIA I G VNKRHLIAISEGT IEGVHC
Sbjct: 255  RLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHLIAISEGTVIEGVHC 314

Query: 1069 KPDSVELLPQQPDMSRPRLRIVVHEGRNHEVRELVKNAGLTLYSLKRVRIGGYRLPSDLG 1248
             PDSVELLP QP++S+PRLR+VVHEGRNHEVRELVK+AGL ++SLKR+RIGG+RLPSDLG
Sbjct: 315  TPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLKRIRIGGFRLPSDLG 374

Query: 1249 IGKHAELKQGDLKSLGGMS 1305
             GKH ELKQGDLK+LG  S
Sbjct: 375  HGKHVELKQGDLKALGWKS 393


>ref|XP_002311995.1| predicted protein [Populus trichocarpa] gi|222851815|gb|EEE89362.1|
            predicted protein [Populus trichocarpa]
          Length = 397

 Score =  485 bits (1249), Expect = e-134
 Identities = 252/375 (67%), Positives = 287/375 (76%), Gaps = 3/375 (0%)
 Frame = +1

Query: 181  TLPLIHFSPICSSSTSTTEFNISFGXXXXXXXXXXXXXXXDQSPSISH---LIPWIIRGE 351
            +L L++ S   +  T++ EFNI+F                  S S+      IPWI+RGE
Sbjct: 21   SLSLLNKSIRPTRITASLEFNITFAPPKPKPKLPANLQTDAASLSLPPGQLFIPWIVRGE 80

Query: 352  DGNVKLQSTPPPQLLHTMANXXXXXXXXXXXXXXXXXXXXXXXVLTSEPKFSKAARRFYN 531
            DGN+KLQS PP +L+H +A+                        L +EP  SKAARRFYN
Sbjct: 81   DGNLKLQSNPPARLIHAIADAKTQPKKKKDKVKKESSGNVKAK-LEAEPTRSKAARRFYN 139

Query: 532  QKFRDPPQRLSKVLAAAGVASRRSSEELIFEGKVTVNGSVCNTPQTRVDPARDMIYVNGN 711
            + FRD  QRLSKVLAAAGVASRRSSE LIFEGKVTVNGSVCNTPQTRVDP RD IYVNGN
Sbjct: 140  ENFRDQAQRLSKVLAAAGVASRRSSEALIFEGKVTVNGSVCNTPQTRVDPGRDSIYVNGN 199

Query: 712  RISKKLPPKVYLALNKPKGYICSNGEKESKSVMLLVDDYLKSWNRINPGFPKPRLFTVGR 891
            R+ KKLPPK+Y+ALNKPKGYICS GEKESKSVM L+DDY +SW++ NPG PKPRLFTVGR
Sbjct: 200  RLPKKLPPKIYIALNKPKGYICSLGEKESKSVMCLLDDYFQSWDKRNPGLPKPRLFTVGR 259

Query: 892  LDVATSGLIIITNDGDFTQRISHPSSGLSKEYIAVIQGDVNKRHLIAISEGTSIEGVHCK 1071
            LDVAT+GLII+TNDGDF Q+I+HPSS LSKEYIA + G V+KRHL A+SEGT IEGV C 
Sbjct: 260  LDVATTGLIIVTNDGDFAQQIAHPSSNLSKEYIATVDGVVSKRHLFAVSEGTVIEGVRCV 319

Query: 1072 PDSVELLPQQPDMSRPRLRIVVHEGRNHEVRELVKNAGLTLYSLKRVRIGGYRLPSDLGI 1251
            PDSVELLPQQPD  RPRLRIVVHEGRNHEVRELVKNAGL ++SLKRVRIGG+RLPSDLG+
Sbjct: 320  PDSVELLPQQPDRPRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPSDLGL 379

Query: 1252 GKHAELKQGDLKSLG 1296
            GKHAELKQ DLK+LG
Sbjct: 380  GKHAELKQTDLKTLG 394


>ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cucumis sativus] gi|449490423|ref|XP_004158601.1|
            PREDICTED: uncharacterized RNA pseudouridine synthase
            aq_1464-like [Cucumis sativus]
          Length = 398

 Score =  476 bits (1224), Expect = e-131
 Identities = 246/366 (67%), Positives = 284/366 (77%), Gaps = 2/366 (0%)
 Frame = +1

Query: 214  SSSTSTTEFNISFGXXXXXXXXXXXXXXX--DQSPSISHLIPWIIRGEDGNVKLQSTPPP 387
            SSS+S+ EFNI+F                  D++      IPWI+RGEDGN+KLQS PP 
Sbjct: 42   SSSSSSLEFNITFAPPKPKPKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPT 101

Query: 388  QLLHTMANXXXXXXXXXXXXXXXXXXXXXXXVLTSEPKFSKAARRFYNQKFRDPPQRLSK 567
            + LH+++                         +T  PK SKAARRFYN+  R+  QRLSK
Sbjct: 102  RFLHSVSEDETKPKKKKVSAGKP---------ITEPPKHSKAARRFYNENIRESSQRLSK 152

Query: 568  VLAAAGVASRRSSEELIFEGKVTVNGSVCNTPQTRVDPARDMIYVNGNRISKKLPPKVYL 747
            VLAAAGVASRRSSEELIF G+VTVNGSVCNTPQTRVDPARD+IYVNGNR+ KKLPPKVYL
Sbjct: 153  VLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYL 212

Query: 748  ALNKPKGYICSNGEKESKSVMLLVDDYLKSWNRINPGFPKPRLFTVGRLDVATSGLIIIT 927
            ALNKPKGYICS+G+KESKSV+ L DDYLKSW++  PG PKPRLFTVGRLDVAT+GLII+T
Sbjct: 213  ALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVT 272

Query: 928  NDGDFTQRISHPSSGLSKEYIAVIQGDVNKRHLIAISEGTSIEGVHCKPDSVELLPQQPD 1107
            NDGDF Q ISHPSSGLSKEYIA I G V+K++LIAISEGT I+GVHC PDSVELLP+QPD
Sbjct: 273  NDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPD 332

Query: 1108 MSRPRLRIVVHEGRNHEVRELVKNAGLTLYSLKRVRIGGYRLPSDLGIGKHAELKQGDLK 1287
            +S+ RLRIVVHEGRNHEVRELVK AGL +YSLKRVRIGG+RLPSDLG+G + ELKQ +LK
Sbjct: 333  ISKSRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELK 392

Query: 1288 SLGGMS 1305
            ++G  S
Sbjct: 393  AIGWKS 398


>emb|CBI31423.3| unnamed protein product [Vitis vinifera]
          Length = 296

 Score =  471 bits (1212), Expect = e-130
 Identities = 229/271 (84%), Positives = 252/271 (92%)
 Frame = +1

Query: 493  EPKFSKAARRFYNQKFRDPPQRLSKVLAAAGVASRRSSEELIFEGKVTVNGSVCNTPQTR 672
            EPK+SKAARRFYN+ FRDPPQRLSKVLAAAGVASRR+SEELIFEG+VTVNGSVCNTPQTR
Sbjct: 26   EPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTR 85

Query: 673  VDPARDMIYVNGNRISKKLPPKVYLALNKPKGYICSNGEKESKSVMLLVDDYLKSWNRIN 852
            VDPARDMIYVNGNR+ KKLPPKVYLALNKPKGYICS+GEKESKSV+ L DDYLKSWN+ N
Sbjct: 86   VDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQN 145

Query: 853  PGFPKPRLFTVGRLDVATSGLIIITNDGDFTQRISHPSSGLSKEYIAVIQGDVNKRHLIA 1032
            PG PKPR+FTVGRLDVAT+GLII+TNDGDF Q++SHPSS LSKEYIA I G VNKRHLIA
Sbjct: 146  PGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHLIA 205

Query: 1033 ISEGTSIEGVHCKPDSVELLPQQPDMSRPRLRIVVHEGRNHEVRELVKNAGLTLYSLKRV 1212
            ISEGT IEGVHC PDSVELLP QP++S+PRLR+VVHEGRNHEVRELVK+AGL ++SLKR+
Sbjct: 206  ISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLKRI 265

Query: 1213 RIGGYRLPSDLGIGKHAELKQGDLKSLGGMS 1305
            RIGG+RLPSDLG GKH ELKQGDLK+LG  S
Sbjct: 266  RIGGFRLPSDLGHGKHVELKQGDLKALGWKS 296


>ref|XP_002879786.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297325625|gb|EFH56045.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 412

 Score =  467 bits (1201), Expect = e-129
 Identities = 245/397 (61%), Positives = 291/397 (73%), Gaps = 22/397 (5%)
 Frame = +1

Query: 172  KLKTLPLI-HFSPI----CSSSTSTT----EFNISFGXXXXXXXXXXXXXXXDQSPSISH 324
            K+K  PL   F PI    CS S+S++    EF+ISF                 Q      
Sbjct: 18   KIKAFPLSPRFFPIRTLRCSVSSSSSSEPIEFDISFAPPKPKPSSTRGGATPQQL----- 72

Query: 325  LIPWIIRGEDGNVKLQSTPPPQLLHTMA------NXXXXXXXXXXXXXXXXXXXXXXXVL 486
             IPWI+RG+DG +KLQS PP +L+H +A      N                         
Sbjct: 73   FIPWIVRGDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKPKKKQPQATSSSASATASA 132

Query: 487  TS-------EPKFSKAARRFYNQKFRDPPQRLSKVLAAAGVASRRSSEELIFEGKVTVNG 645
            +S       +PK SKAARRFYN+ F++PPQRLSKVLAAAGVASRR+SEELIF+GKVTVNG
Sbjct: 133  SSPASHSEVKPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNG 192

Query: 646  SVCNTPQTRVDPARDMIYVNGNRISKKLPPKVYLALNKPKGYICSNGEKESKSVMLLVDD 825
             +CNTPQTRVDP+RD+IYVNGNRI KKLPPKVY ALNKPKGYICS+GEKE KSV+ L D+
Sbjct: 193  ILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSVISLFDE 252

Query: 826  YLKSWNRINPGFPKPRLFTVGRLDVATSGLIIITNDGDFTQRISHPSSGLSKEYIAVIQG 1005
            YL SW++ NPG PKPRLFTVGRLDVAT+GLI++TNDGDF Q++SHPSS L KEYI  + G
Sbjct: 253  YLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVG 312

Query: 1006 DVNKRHLIAISEGTSIEGVHCKPDSVELLPQQPDMSRPRLRIVVHEGRNHEVRELVKNAG 1185
            D++KRHL+AISEGT +EGVHC PDSVEL+P+Q D+ R RLRIVVHEGRNHEVRELVKNAG
Sbjct: 313  DIHKRHLMAISEGTIVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAG 372

Query: 1186 LTLYSLKRVRIGGYRLPSDLGIGKHAELKQGDLKSLG 1296
            L ++SLKRVRIGG+RLPSDLG+GKH ELKQ +LK++G
Sbjct: 373  LEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKAMG 409