BLASTX nr result
ID: Cimicifuga21_contig00003150
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cimicifuga21_contig00003150 (4117 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 2270 0.0 gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 2224 0.0 ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta... 2216 0.0 ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ... 2206 0.0 ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su... 2203 0.0 >ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis vinifera] gi|147841183|emb|CAN72948.1| hypothetical protein VITISV_033708 [Vitis vinifera] gi|302143287|emb|CBI21848.3| unnamed protein product [Vitis vinifera] Length = 1193 Score = 2270 bits (5882), Expect = 0.0 Identities = 1127/1182 (95%), Positives = 1150/1182 (97%), Gaps = 4/1182 (0%) Frame = +2 Query: 68 MYGGEEYDPMV----DDDEEDITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 235 MYG +EYDP V +DD+E+ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV Sbjct: 1 MYGEDEYDPTVVEEEEDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 60 Query: 236 DESDDIVIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 415 DES DI IRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN Sbjct: 61 DESADIEIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 120 Query: 416 LTYSAPLYVDVTKQVMKKGHDCEEVTEPPETIPKVFIGKVPIMLRSTYCTLVNNSEKDLT 595 LTYSAPLYVDVTK+++KKGHD EEVTE E KVFIGKVPIMLRS+YCT+ NSEKDLT Sbjct: 121 LTYSAPLYVDVTKRIIKKGHDLEEVTETQE-FTKVFIGKVPIMLRSSYCTVYQNSEKDLT 179 Query: 596 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRP 775 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAESQNRP Sbjct: 180 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 239 Query: 776 PSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS 955 PSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS Sbjct: 240 PSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS 299 Query: 956 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGV 1135 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGV Sbjct: 300 DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGV 359 Query: 1136 GEFCETKKAYYFGYIIHRLLVCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 1315 GE+CETKKAYYFGYIIHRLL+CALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR Sbjct: 360 GEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 419 Query: 1316 DVRAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 1495 DVRAY QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT Sbjct: 420 DVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 479 Query: 1496 YASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITV 1675 YASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITV Sbjct: 480 YASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITV 539 Query: 1676 GSAANPILEFLEEWSTENFEEISPAVIPHATKIFVNGCWVGIHRNPELLVKTLRQLRRQV 1855 GSAANPILEFLEEWSTENFEEISPAVIP +TKIFVNGCWVGIHRNP+LLVKTLRQLRRQV Sbjct: 540 GSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQV 599 Query: 1856 DVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESAEDFGWH 2035 DVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKK+DIRALQ RES ED GWH Sbjct: 600 DVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWH 659 Query: 2036 DLVSKGYIEYVDXXXXXXXMISMTINDLVTARINPEEAYSETYTHCEIHPSLILGVCASI 2215 DLVSKG+IEYVD MISMTINDL++AR+NPEEAYSETYTHCEIHPSLILGVCASI Sbjct: 660 DLVSKGFIEYVDTEEEETTMISMTINDLISARLNPEEAYSETYTHCEIHPSLILGVCASI 719 Query: 2216 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFR 2395 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFR Sbjct: 720 IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFR 779 Query: 2396 QLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 2575 QLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG Sbjct: 780 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 839 Query: 2576 RPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDESQGQGIASRYTRR 2755 RPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ D+SQGQ ASRYTRR Sbjct: 840 RPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDSQGQ--ASRYTRR 897 Query: 2756 DHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYT 2935 DHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYT Sbjct: 898 DHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYT 957 Query: 2936 QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 3115 QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI Sbjct: 958 QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1017 Query: 3116 SRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 3295 S+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT Sbjct: 1018 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1077 Query: 3296 RQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLK 3475 RQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLK Sbjct: 1078 RQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLK 1137 Query: 3476 KNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMMT 3601 KNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM+T Sbjct: 1138 KNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1179 >gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum] Length = 1191 Score = 2224 bits (5762), Expect = 0.0 Identities = 1094/1174 (93%), Positives = 1138/1174 (96%) Frame = +2 Query: 80 EEYDPMVDDDEEDITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDIVI 259 EEYDP ++D+EE+ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI I Sbjct: 7 EEYDPTMEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 66 Query: 260 RPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 439 RPESQHNPG QSDF ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY Sbjct: 67 RPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 126 Query: 440 VDVTKQVMKKGHDCEEVTEPPETIPKVFIGKVPIMLRSTYCTLVNNSEKDLTELGECPYD 619 VDVTK+V+KKGHD EEVTE + KVFIGKVPIMLRS+YCTL NSEKDLTELGECPYD Sbjct: 127 VDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 185 Query: 620 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSSMFVRM 799 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAESQNRPPS+MFVRM Sbjct: 186 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 245 Query: 800 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELL 979 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELL Sbjct: 246 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELL 305 Query: 980 RPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKK 1159 RPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVGE+CETKK Sbjct: 306 RPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKK 365 Query: 1160 AYYFGYIIHRLLVCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYAQK 1339 AYYFGYIIHRLL+CALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR Y QK Sbjct: 366 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 425 Query: 1340 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 1519 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL Sbjct: 426 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 485 Query: 1520 RRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPIL 1699 RRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PIL Sbjct: 486 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 545 Query: 1700 EFLEEWSTENFEEISPAVIPHATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGV 1879 EFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHR+P++LV+TLR+LRR+VDVNTEVGV Sbjct: 546 EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGV 605 Query: 1880 IRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESAEDFGWHDLVSKGYI 2059 +RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIK+KDI+ALQQRE+ ED GWHDLV+KG+I Sbjct: 606 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFI 665 Query: 2060 EYVDXXXXXXXMISMTINDLVTARINPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 2239 EY+D MISMTINDLV+AR+NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ Sbjct: 666 EYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 725 Query: 2240 SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 2419 SPRNTYQSAMGKQAMGIYVTNYQ RMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGINA Sbjct: 726 SPRNTYQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 785 Query: 2420 IVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 2599 IVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTM Sbjct: 786 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTM 845 Query: 2600 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDESQGQGIASRYTRRDHSTSLRH 2779 GMRHGSYDKLDDDGLAPPGTRVSGEDV+IGKTTPIA DE+QG A+RYTRRDHSTSLRH Sbjct: 846 GMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGP--AARYTRRDHSTSLRH 903 Query: 2780 SESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 2959 SE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+ Sbjct: 904 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTM 963 Query: 2960 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCG 3139 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCG Sbjct: 964 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1023 Query: 3140 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 3319 YQMRGFETMYNGHTGRRLT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS Sbjct: 1024 YQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1083 Query: 3320 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG 3499 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRG Sbjct: 1084 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRG 1143 Query: 3500 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMMT 3601 CKNKTDIVQVHIPYACKLLFQELM+MAIAPRM+T Sbjct: 1144 CKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1177 >ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis] gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis] Length = 1194 Score = 2216 bits (5741), Expect = 0.0 Identities = 1098/1183 (92%), Positives = 1138/1183 (96%), Gaps = 5/1183 (0%) Frame = +2 Query: 68 MYGGEEYDPMV-----DDDEEDITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 232 M +EYD + D+DE++ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI Sbjct: 1 MEDDQEYDQNLNEDYEDEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60 Query: 233 VDESDDIVIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 412 VDES DI IRPESQHNPG QSDF ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR Sbjct: 61 VDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120 Query: 413 NLTYSAPLYVDVTKQVMKKGHDCEEVTEPPETIPKVFIGKVPIMLRSTYCTLVNNSEKDL 592 NLTYSAPLYVDVTK+V+KKGHD EEVTE + KVFIGKVPIMLRS+YCTL NSEKDL Sbjct: 121 NLTYSAPLYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDL 179 Query: 593 TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNR 772 TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAESQNR Sbjct: 180 TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNR 239 Query: 773 PPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 952 PPS+MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF Sbjct: 240 PPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 299 Query: 953 SDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVG 1132 SDTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVG Sbjct: 300 SDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVG 359 Query: 1133 VGEFCETKKAYYFGYIIHRLLVCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 1312 VGE+CETKKAYYFGYIIHRLL+CALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT Sbjct: 360 VGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 419 Query: 1313 RDVRAYAQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRL 1492 RDVR+Y QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRL Sbjct: 420 RDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRL 479 Query: 1493 TYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT 1672 TYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYIT Sbjct: 480 TYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 539 Query: 1673 VGSAANPILEFLEEWSTENFEEISPAVIPHATKIFVNGCWVGIHRNPELLVKTLRQLRRQ 1852 VGSAA PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHR+P++LVKTLR+LRR+ Sbjct: 540 VGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRR 599 Query: 1853 VDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESAEDFGW 2032 VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRES+E+ GW Sbjct: 600 VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGW 659 Query: 2033 HDLVSKGYIEYVDXXXXXXXMISMTINDLVTARINPEEAYSETYTHCEIHPSLILGVCAS 2212 HDLV+KG+IEY+D MISMTI+DLV ARINPEEAYS+TYTHCEIHPSLILGVCAS Sbjct: 660 HDLVAKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCAS 719 Query: 2213 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHF 2392 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHF Sbjct: 720 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779 Query: 2393 RQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 2572 RQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF Sbjct: 780 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839 Query: 2573 GRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDESQGQGIASRYTR 2752 GRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIA +E+QGQ ++RYTR Sbjct: 840 GRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQ--SARYTR 897 Query: 2753 RDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTY 2932 RDHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTY Sbjct: 898 RDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957 Query: 2933 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 3112 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN Sbjct: 958 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1017 Query: 3113 ISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 3292 IS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL Sbjct: 1018 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1077 Query: 3293 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANL 3472 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANL Sbjct: 1078 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANL 1137 Query: 3473 KKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMMT 3601 KKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM+T Sbjct: 1138 KKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180 >ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum] gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit 2; Short=RNA polymerase II subunit B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA polymerase II subunit 2 [Solanum lycopersicum] Length = 1191 Score = 2206 bits (5716), Expect = 0.0 Identities = 1090/1176 (92%), Positives = 1134/1176 (96%), Gaps = 2/1176 (0%) Frame = +2 Query: 80 EEYDPM--VDDDEEDITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDDI 253 +EY+P VDDDEE+ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES DI Sbjct: 5 DEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 64 Query: 254 VIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 433 IRPESQHNPG QSDF ETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP Sbjct: 65 EIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 124 Query: 434 LYVDVTKQVMKKGHDCEEVTEPPETIPKVFIGKVPIMLRSTYCTLVNNSEKDLTELGECP 613 LYVDVTK+V+KKGHD EEVTE + KVFIGKVPIMLRS+YCTL NSEKDLTELGECP Sbjct: 125 LYVDVTKRVIKKGHDGEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 183 Query: 614 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSSMFV 793 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+V EVRSMA++QNRPPS+MFV Sbjct: 184 LDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFV 243 Query: 794 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMME 973 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMME Sbjct: 244 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMME 303 Query: 974 LLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEFCET 1153 LLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVGE+CET Sbjct: 304 LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCET 363 Query: 1154 KKAYYFGYIIHRLLVCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYA 1333 KKAYYFGYIIHRLL+CALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR Y Sbjct: 364 KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYV 423 Query: 1334 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 1513 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS Sbjct: 424 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 483 Query: 1514 HLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANP 1693 HLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA P Sbjct: 484 HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 543 Query: 1694 ILEFLEEWSTENFEEISPAVIPHATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEV 1873 ILEFLEEW TENFEEISPAVIP ATKIFVNG WVGIHR+P++LV+TLR+LRR+VDVNTEV Sbjct: 544 ILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEV 603 Query: 1874 GVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESAEDFGWHDLVSKG 2053 GV+RDIRLKELR+YTDYGRCSRPLFIVEKQRL+IKKKDI+ LQQRES ++ GWHDLV+KG Sbjct: 604 GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKG 663 Query: 2054 YIEYVDXXXXXXXMISMTINDLVTARINPEEAYSETYTHCEIHPSLILGVCASIIPFPDH 2233 YIEY+D MISMTINDLV AR+NP +AYS+TYTHCEIHPSLILGVCASIIPFPDH Sbjct: 664 YIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDH 723 Query: 2234 NQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 2413 NQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI Sbjct: 724 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 783 Query: 2414 NAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNREN 2593 NAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R + Sbjct: 784 NAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRAS 843 Query: 2594 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDESQGQGIASRYTRRDHSTSL 2773 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ D++QGQ ASRYTR+DHSTSL Sbjct: 844 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQ--ASRYTRKDHSTSL 901 Query: 2774 RHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 2953 RHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW Sbjct: 902 RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 961 Query: 2954 TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHK 3133 TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHK Sbjct: 962 TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1021 Query: 3134 CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 3313 CGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG Sbjct: 1022 CGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1081 Query: 3314 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFEC 3493 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFEC Sbjct: 1082 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFEC 1141 Query: 3494 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMMT 3601 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM+T Sbjct: 1142 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177 >ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine max] Length = 1192 Score = 2203 bits (5709), Expect = 0.0 Identities = 1090/1177 (92%), Positives = 1133/1177 (96%), Gaps = 3/1177 (0%) Frame = +2 Query: 80 EEYDPMV---DDDEEDITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESDD 250 +EYD + +DDEE+ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES D Sbjct: 7 QEYDEQMMEEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66 Query: 251 IVIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 430 I IRPESQHNPG QSDF ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA Sbjct: 67 IEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126 Query: 431 PLYVDVTKQVMKKGHDCEEVTEPPETIPKVFIGKVPIMLRSTYCTLVNNSEKDLTELGEC 610 PLYVDV+K+V+KKGHD EEVTE + KVFIGKVPIMLRS+YCTL NSEKDLTELGEC Sbjct: 127 PLYVDVSKRVIKKGHDGEEVTEAQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185 Query: 611 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSSMF 790 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAESQNRPPS+MF Sbjct: 186 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245 Query: 791 VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMM 970 VRMLSRTS+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS TQMM Sbjct: 246 VRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSYTQMM 305 Query: 971 ELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEFCE 1150 ELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVGE+CE Sbjct: 306 ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCE 365 Query: 1151 TKKAYYFGYIIHRLLVCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 1330 TKKAYYFGYIIHRLL+CALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR Y Sbjct: 366 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGY 425 Query: 1331 AQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTL 1510 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTL Sbjct: 426 VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTL 485 Query: 1511 SHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAN 1690 SHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA Sbjct: 486 SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545 Query: 1691 PILEFLEEWSTENFEEISPAVIPHATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTE 1870 PILEFLEEW TENFEEISPAVIP ATKIFVNGCW+GIHR+P++LV+TL++LRR+VDVNTE Sbjct: 546 PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRVDVNTE 605 Query: 1871 VGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESAEDFGWHDLVSK 2050 VGV+RDIRLKELR+YTDYGRCSRPLFIV+KQRLLIKKKDI ALQQRES ED GWHDLVSK Sbjct: 606 VGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSK 665 Query: 2051 GYIEYVDXXXXXXXMISMTINDLVTARINPEEAYSETYTHCEIHPSLILGVCASIIPFPD 2230 G+IEY+D MISMTINDLV ARINPE+AYS+TYTHCEIHPSLILGVCASIIPFPD Sbjct: 666 GFIEYIDTEEEETTMISMTINDLVQARINPEDAYSDTYTHCEIHPSLILGVCASIIPFPD 725 Query: 2231 HNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 2410 HNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG Sbjct: 726 HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785 Query: 2411 INAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRE 2590 INAIV+I+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R Sbjct: 786 INAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRA 845 Query: 2591 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDESQGQGIASRYTRRDHSTS 2770 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ +E+QGQ A RYTRRDHS S Sbjct: 846 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQ--ALRYTRRDHSIS 903 Query: 2771 LRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 2950 LRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP Sbjct: 904 LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963 Query: 2951 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALH 3130 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALH Sbjct: 964 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1023 Query: 3131 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 3310 KCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE Sbjct: 1024 KCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083 Query: 3311 GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE 3490 GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE Sbjct: 1084 GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE 1143 Query: 3491 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMMT 3601 CRGCKNKTDIVQV+IPYACKLLFQELMAMAIAPRM+T Sbjct: 1144 CRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLT 1180