BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00003085
         (1120 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI23720.3| unnamed protein product [Vitis vinifera]              315   2e-83
ref|XP_002528350.1| ribonucleoprotein, chloroplast, putative [Ri...   310   5e-82
ref|XP_002311696.1| predicted protein [Populus trichocarpa] gi|1...   300   3e-79
gb|EAY88000.1| hypothetical protein OsI_09422 [Oryza sativa Indi...   298   2e-78
ref|NP_001048500.1| Os02g0815200 [Oryza sativa Japonica Group] g...   296   6e-78

>emb|CBI23720.3| unnamed protein product [Vitis vinifera]
          Length = 283

 Score =  315 bits (806), Expect = 2e-83
 Identities = 171/305 (56%), Positives = 206/305 (67%), Gaps = 2/305 (0%)
 Frame = -1

Query: 1081 AAAGTTISSCLSTR--INSKHVSSSDFVFRISCTRTLQVASISHVHLIDSLPLNSITNKW 908
            AA G++ S+ + T     SKH  S D + RI  T   +V SISH H+ID      I++KW
Sbjct: 7    AAIGSSFSTTMHTLKLSRSKHCPS-DALLRIISTPIFKVPSISHSHVIDPPLSLPISHKW 65

Query: 907  RNVRIAASVIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 728
            R  RI+A+V Q                                                 
Sbjct: 66   RAPRISAAVAQEEAAATAPVEEEQQQGQEEGEQVLR------------------------ 101

Query: 727  AEAEADVKPTSSTKLYFGNLPYNCDSAQLAGIIQDYGSPELIEVLYDRATGRSRGFAFVT 548
               E   +   +TKLYFGNLPY+CDSAQLAGIIQ+YGSPEL+EVLY+R TGRSRGFAFVT
Sbjct: 102  ---EEGAESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVT 158

Query: 547  MSTIEDCNVVIQNLDGSLYGGRPLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESL 368
            MS++EDCN VI+NLDGS YGGR LRVNFSDKPKPK PLYPETEYKLFVGNLSWSVTSESL
Sbjct: 159  MSSVEDCNAVIENLDGSEYGGRTLRVNFSDKPKPKLPLYPETEYKLFVGNLSWSVTSESL 218

Query: 367  TEAFQAYGDVVGARVLYDGDTGRSRGYGFVCFSSKEEMEAALTSLNGMEIEGRSMRVSLA 188
             + FQ YG+V+GARVLYDG+TGRSRGYGFVC+S+K EM+ AL SLNG+E+EGR++R+SLA
Sbjct: 219  NQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGVELEGRAIRISLA 278

Query: 187  QGKKN 173
            QG+++
Sbjct: 279  QGRRS 283


>ref|XP_002528350.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
            gi|223532218|gb|EEF34022.1| ribonucleoprotein,
            chloroplast, putative [Ricinus communis]
          Length = 285

 Score =  310 bits (793), Expect = 5e-82
 Identities = 176/315 (55%), Positives = 210/315 (66%), Gaps = 12/315 (3%)
 Frame = -1

Query: 1081 AAAGTTISSCLSTRI------NSKHVSSSDFVFRISCTRTLQVASISH-VHLIDSLPLNS 923
            A A   ISS  S  I      NSKH+ S D + R+     + +ASI H  + I+  PL+ 
Sbjct: 3    ATAAAAISSSFSPSIHTLKCTNSKHLPS-DSLLRLPSAHRVALASIYHRSYAIE--PLSQ 59

Query: 922  ITNKWRNVR--IAASVIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 749
            +   WR+V   ++A+V Q                                          
Sbjct: 60   VAVSWRSVARLVSAAVAQEEAAVTAPVEEDEQQQVAEE---------------------- 97

Query: 748  XXXXXXKAEAEADVKPTSS---TKLYFGNLPYNCDSAQLAGIIQDYGSPELIEVLYDRAT 578
                    EAE + +P ++   TKLYFGNLPYN DSAQLAGIIQDYG+PEL+EVLYDR T
Sbjct: 98   -------GEAEPEAEPEAAPINTKLYFGNLPYNVDSAQLAGIIQDYGTPELVEVLYDRDT 150

Query: 577  GRSRGFAFVTMSTIEDCNVVIQNLDGSLYGGRPLRVNFSDKPKPKEPLYPETEYKLFVGN 398
            GRSRGFAFVTMST+EDCN VI+NLDGS + GR LRVNFSDKPKPKEPLYPETE+KLFVGN
Sbjct: 151  GRSRGFAFVTMSTVEDCNAVIENLDGSQFMGRILRVNFSDKPKPKEPLYPETEHKLFVGN 210

Query: 397  LSWSVTSESLTEAFQAYGDVVGARVLYDGDTGRSRGYGFVCFSSKEEMEAALTSLNGMEI 218
            LSWSVTSESL EAFQ YG++VGARVLYDG+TGRSRGYGFVC++++ EME AL SLNG+E+
Sbjct: 211  LSWSVTSESLVEAFQEYGNIVGARVLYDGETGRSRGYGFVCYATRSEMENALVSLNGVEL 270

Query: 217  EGRSMRVSLAQGKKN 173
            EGR+MRVSLAQGKK+
Sbjct: 271  EGRAMRVSLAQGKKS 285


>ref|XP_002311696.1| predicted protein [Populus trichocarpa] gi|118486835|gb|ABK95252.1|
           unknown [Populus trichocarpa]
           gi|222851516|gb|EEE89063.1| predicted protein [Populus
           trichocarpa]
          Length = 279

 Score =  300 bits (769), Expect = 3e-79
 Identities = 144/184 (78%), Positives = 168/184 (91%)
 Frame = -1

Query: 724 EAEADVKPTSSTKLYFGNLPYNCDSAQLAGIIQDYGSPELIEVLYDRATGRSRGFAFVTM 545
           E EAD  P + TKLYFGNLPYN DSAQLAG+IQ+YG+PE++EVLY R TGRSRGFAFVTM
Sbjct: 97  EGEADQVPVN-TKLYFGNLPYNVDSAQLAGMIQEYGTPEMVEVLYHRETGRSRGFAFVTM 155

Query: 544 STIEDCNVVIQNLDGSLYGGRPLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLT 365
           S+IEDC  VI+NLDGS Y GR LRVNF+DKPKPKEPLYPETEYKLF+GNLSWSVTSESLT
Sbjct: 156 SSIEDCETVIENLDGSQYMGRILRVNFADKPKPKEPLYPETEYKLFIGNLSWSVTSESLT 215

Query: 364 EAFQAYGDVVGARVLYDGDTGRSRGYGFVCFSSKEEMEAALTSLNGMEIEGRSMRVSLAQ 185
           +AFQ YG+VVGARVLYDG+TG+SRGYGFVC+S+KEE+E AL SLNG+E+EGR++RVSLA+
Sbjct: 216 QAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKEELETALQSLNGVELEGRALRVSLAE 275

Query: 184 GKKN 173
           G+K+
Sbjct: 276 GRKS 279


>gb|EAY88000.1| hypothetical protein OsI_09422 [Oryza sativa Indica Group]
          Length = 318

 Score =  298 bits (762), Expect = 2e-78
 Identities = 144/184 (78%), Positives = 165/184 (89%), Gaps = 1/184 (0%)
 Frame = -1

Query: 724 EAEADVKPTS-STKLYFGNLPYNCDSAQLAGIIQDYGSPELIEVLYDRATGRSRGFAFVT 548
           EAEA+ +    +TKLYFGNLPYNCDSAQLAGI+QDY +PE++EVLYDRATGRSRGFAFVT
Sbjct: 135 EAEAEAEAAGITTKLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVT 194

Query: 547 MSTIEDCNVVIQNLDGSLYGGRPLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESL 368
           MSTIEDC  VI+NLDGSLY GR +RVNF+DKPKPK PLYPETE+KLFVGNLSW+VTSE L
Sbjct: 195 MSTIEDCEQVIKNLDGSLYSGRTMRVNFADKPKPKLPLYPETEHKLFVGNLSWTVTSEML 254

Query: 367 TEAFQAYGDVVGARVLYDGDTGRSRGYGFVCFSSKEEMEAALTSLNGMEIEGRSMRVSLA 188
           TE FQ  G+VVGARVLYDG+TGRSRGYGFVC+S+KEEM+ AL+SLNG E+EGR +RV+LA
Sbjct: 255 TEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRVNLA 314

Query: 187 QGKK 176
            GKK
Sbjct: 315 LGKK 318


>ref|NP_001048500.1| Os02g0815200 [Oryza sativa Japonica Group]
           gi|47847880|dbj|BAD21673.1| putative RNA-binding protein
           RNP1 precursor [Oryza sativa Japonica Group]
           gi|47848169|dbj|BAD21996.1| putative RNA-binding protein
           RNP1 precursor [Oryza sativa Japonica Group]
           gi|113538031|dbj|BAF10414.1| Os02g0815200 [Oryza sativa
           Japonica Group] gi|125584133|gb|EAZ25064.1| hypothetical
           protein OsJ_08857 [Oryza sativa Japonica Group]
           gi|215695143|dbj|BAG90334.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215737594|dbj|BAG96724.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 316

 Score =  296 bits (758), Expect = 6e-78
 Identities = 144/183 (78%), Positives = 164/183 (89%)
 Frame = -1

Query: 724 EAEADVKPTSSTKLYFGNLPYNCDSAQLAGIIQDYGSPELIEVLYDRATGRSRGFAFVTM 545
           EAEA+    + TKLYFGNLPYNCDSAQLAGI+QDY +PE++EVLYDRATGRSRGFAFVTM
Sbjct: 135 EAEAEAAGIT-TKLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTM 193

Query: 544 STIEDCNVVIQNLDGSLYGGRPLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLT 365
           STIEDC  VI+NLDGSLY GR +RVNF+DKPKPK PLYPETE+KLFVGNLSW+VTSE LT
Sbjct: 194 STIEDCEQVIKNLDGSLYSGRTMRVNFADKPKPKLPLYPETEHKLFVGNLSWTVTSEMLT 253

Query: 364 EAFQAYGDVVGARVLYDGDTGRSRGYGFVCFSSKEEMEAALTSLNGMEIEGRSMRVSLAQ 185
           E FQ  G+VVGARVLYDG+TGRSRGYGFVC+S+KEEM+ AL+SLNG E+EGR +RV+LA 
Sbjct: 254 EMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRVNLAL 313

Query: 184 GKK 176
           GKK
Sbjct: 314 GKK 316