BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00002430
         (2690 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24290.3| unnamed protein product [Vitis vinifera]             1043   0.0  
ref|XP_002265891.2| PREDICTED: replication factor C subunit 1-li...  1036   0.0  
ref|XP_003527511.1| PREDICTED: replication factor C subunit 1-li...   979   0.0  
ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-li...   974   0.0  
dbj|BAC76085.1| replication factor C 110 kDa subunit [Oryza sati...   971   0.0  

>emb|CBI24290.3| unnamed protein product [Vitis vinifera]
          Length = 941

 Score = 1043 bits (2696), Expect = 0.0
 Identities = 544/745 (73%), Positives = 608/745 (81%), Gaps = 1/745 (0%)
 Frame = -3

Query: 2502 FMNFGERKDPPHKGEKEVPEGAPECLAGQTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 2323
            FMNFGERKDPPHKGEKEVPEGA +CLAG TFVISGTLDSLEREEAEDLIKRHGGRVTGSV
Sbjct: 158  FMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 217

Query: 2322 SKKTNYLLVDEDIGGRKSEKAKELGTKFITEDGLFDMIRKSRXXXXXXXXXXXXXTADMV 2143
            SKKTN+LL DEDIGG KS KAKELGT F+TEDGLFDMI  S                 +V
Sbjct: 218  SKKTNFLLCDEDIGGNKSAKAKELGTAFLTEDGLFDMICASNHAKAPARGEPKKSLDKVV 277

Query: 2142 LASQPKASPSKIEAKDDYRAKKAAPKGIASGASPAKHKGQATGRGSLTWTEKYKPKVPND 1963
            LA+ PK SP K+E K D     +  + + +  +P KH  Q  G  SLTWTEKYKPKVPND
Sbjct: 278  LAT-PKKSPQKVEKKVDQVVNSSGKRTVLAATTP-KHIYQTIGHASLTWTEKYKPKVPND 335

Query: 1962 IIGNQSIVKQLQEWLMHWDDKNLHTGPKEKGKKQNDSGSKKAVLLSGTPGIGKSTSAKLV 1783
            IIGNQS+VKQL EWL HW+++ LHTG K KGKKQNDSG+KKAVLLSGTPGIGK+TSAKLV
Sbjct: 336  IIGNQSLVKQLHEWLAHWNEQFLHTGTKGKGKKQNDSGAKKAVLLSGTPGIGKTTSAKLV 395

Query: 1782 SQMLGFQAIEVNASDSRGKADAKIVKGIGGSTANSVKELVSSGSLNVNMDRAKHPKSVLI 1603
            SQMLGFQAIEVNASD+RGKA+AKI KGIGGS ANS+KELVS+ +L  +MDR+KHPK+VLI
Sbjct: 396  SQMLGFQAIEVNASDNRGKANAKIDKGIGGSNANSIKELVSNEALGAHMDRSKHPKTVLI 455

Query: 1602 MDEVDGMSAGDRGGVADLXXXXXXXXXXXXXXCNDRYSQKLKSLVNYCLPLNYRKPTKQQ 1423
            MDEVDGMSAGDRGGVADL              CNDRYSQKLKSLVNYCL L++RKPTKQQ
Sbjct: 456  MDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQ 515

Query: 1422 MAKRLMQVANAEGLQVKEIALEELAERVNGDMRMAINQLQYMSLSLSVINYDDMRQRLLS 1243
            MAKRL+QVANAEGLQV EIALEELAERVNGDMRMA+NQLQYMSLS+SVI YDD+RQRLLS
Sbjct: 516  MAKRLLQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVIKYDDVRQRLLS 575

Query: 1242 SAKDEDISPFAAVDKLFSFNGGKLRMDERMDLSMSDPDLVPLIIQENYLNFRPSSAGKDD 1063
            SAKDEDISPF AVDKLF FNGGKLRMDER+DLSMSDPDLVPL+IQENY+N+RP+ AGKDD
Sbjct: 576  SAKDEDISPFVAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPTLAGKDD 635

Query: 1062 NGIKRLNLIARAAESIGNGDIINVQIRRYRQWQXXXXXXXXXXXXXXXXLRGSREVLQQG 883
            NG+KR++L+ARAAESIG+GDIINVQIRRYRQWQ                L G RE L+QG
Sbjct: 636  NGVKRMSLLARAAESIGDGDIINVQIRRYRQWQLSQAGSFASCITPAALLHGQRETLEQG 695

Query: 882  ERNFNRFGGWLGKNSTMGKNSRLLDDVHVHLLSSREIVSNRVSLRVDYVSLILKHLTDPL 703
            ERNFNRFGGWLGKNSTMGKN RLL+D+HVHLL+SRE  S R +LR+DY++LILK LTDPL
Sbjct: 696  ERNFNRFGGWLGKNSTMGKNKRLLEDLHVHLLASRESNSGRGTLRIDYLTLILKRLTDPL 755

Query: 702  RTLPKEEAVQKVVEFMDTYSINMDDLDTIAELSKFQGHPNPLDGIPPAVKGALTKAYKQG 523
            R LPK++AVQKVVEFMD YSI+ +D DTI ELSKFQGHP+PL+GI PAVK ALTKAY +G
Sbjct: 756  RMLPKDDAVQKVVEFMDLYSISQEDFDTIVELSKFQGHPSPLEGIQPAVKSALTKAYNKG 815

Query: 522  SSLRVVRAADMITLPGMKKAPKKRIAAILEPVDEALA-ENGDASAESGEENSETEDTDGF 346
            SS R+VRAAD+ITLPG+KKAPKKRIAAILEPVD+ LA ENGDA AES EENS   D    
Sbjct: 816  SSSRLVRAADLITLPGIKKAPKKRIAAILEPVDDELARENGDALAESEEENSSDTDDMDT 875

Query: 345  ENVEXXXXXXXXXXXXKGIQVKLEL 271
             N +            KGI+V+L+L
Sbjct: 876  ANGDKKLPVDLQNLNSKGIKVELDL 900


>ref|XP_002265891.2| PREDICTED: replication factor C subunit 1-like [Vitis vinifera]
          Length = 933

 Score = 1036 bits (2680), Expect = 0.0
 Identities = 544/745 (73%), Positives = 604/745 (81%), Gaps = 1/745 (0%)
 Frame = -3

Query: 2502 FMNFGERKDPPHKGEKEVPEGAPECLAGQTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 2323
            FMNFGERKDPPHKGEKEVPEGA +CLAG TFVISGTLDSLEREEAEDLIKRHGGRVTGSV
Sbjct: 158  FMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 217

Query: 2322 SKKTNYLLVDEDIGGRKSEKAKELGTKFITEDGLFDMIRKSRXXXXXXXXXXXXXTADMV 2143
            SKKTN+LL DEDIGG KS KAKELGT F+TEDGLFDMI  S                 +V
Sbjct: 218  SKKTNFLLCDEDIGGNKSAKAKELGTAFLTEDGLFDMICASNHAKAPARGEPKKSLDKVV 277

Query: 2142 LASQPKASPSKIEAKDDYRAKKAAPKGIASGASPAKHKGQATGRGSLTWTEKYKPKVPND 1963
            LA+ PK SP K+E K          K     A+  KH  Q  G  SLTWTEKYKPKVPND
Sbjct: 278  LAT-PKKSPQKVEKKG---------KRTVLAATTPKHIYQTIGHASLTWTEKYKPKVPND 327

Query: 1962 IIGNQSIVKQLQEWLMHWDDKNLHTGPKEKGKKQNDSGSKKAVLLSGTPGIGKSTSAKLV 1783
            IIGNQS+VKQL EWL HW+++ LHTG K KGKKQNDSG+KKAVLLSGTPGIGK+TSAKLV
Sbjct: 328  IIGNQSLVKQLHEWLAHWNEQFLHTGTKGKGKKQNDSGAKKAVLLSGTPGIGKTTSAKLV 387

Query: 1782 SQMLGFQAIEVNASDSRGKADAKIVKGIGGSTANSVKELVSSGSLNVNMDRAKHPKSVLI 1603
            SQMLGFQAIEVNASD+RGKA+AKI KGIGGS ANS+KELVS+ +L  +MDR+KHPK+VLI
Sbjct: 388  SQMLGFQAIEVNASDNRGKANAKIDKGIGGSNANSIKELVSNEALGAHMDRSKHPKTVLI 447

Query: 1602 MDEVDGMSAGDRGGVADLXXXXXXXXXXXXXXCNDRYSQKLKSLVNYCLPLNYRKPTKQQ 1423
            MDEVDGMSAGDRGGVADL              CNDRYSQKLKSLVNYCL L++RKPTKQQ
Sbjct: 448  MDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQ 507

Query: 1422 MAKRLMQVANAEGLQVKEIALEELAERVNGDMRMAINQLQYMSLSLSVINYDDMRQRLLS 1243
            MAKRL+QVANAEGLQV EIALEELAERVNGDMRMA+NQLQYMSLS+SVI YDD+RQRLLS
Sbjct: 508  MAKRLLQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVIKYDDVRQRLLS 567

Query: 1242 SAKDEDISPFAAVDKLFSFNGGKLRMDERMDLSMSDPDLVPLIIQENYLNFRPSSAGKDD 1063
            SAKDEDISPF AVDKLF FNGGKLRMDER+DLSMSDPDLVPL+IQENY+N+RP+ AGKDD
Sbjct: 568  SAKDEDISPFVAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPTLAGKDD 627

Query: 1062 NGIKRLNLIARAAESIGNGDIINVQIRRYRQWQXXXXXXXXXXXXXXXXLRGSREVLQQG 883
            NG+KR++L+ARAAESIG+GDIINVQIRRYRQWQ                L G RE L+QG
Sbjct: 628  NGVKRMSLLARAAESIGDGDIINVQIRRYRQWQLSQAGSFASCITPAALLHGQRETLEQG 687

Query: 882  ERNFNRFGGWLGKNSTMGKNSRLLDDVHVHLLSSREIVSNRVSLRVDYVSLILKHLTDPL 703
            ERNFNRFGGWLGKNSTMGKN RLL+D+HVHLL+SRE  S R +LR+DY++LILK LTDPL
Sbjct: 688  ERNFNRFGGWLGKNSTMGKNKRLLEDLHVHLLASRESNSGRGTLRIDYLTLILKRLTDPL 747

Query: 702  RTLPKEEAVQKVVEFMDTYSINMDDLDTIAELSKFQGHPNPLDGIPPAVKGALTKAYKQG 523
            R LPK++AVQKVVEFMD YSI+ +D DTI ELSKFQGHP+PL+GI PAVK ALTKAY +G
Sbjct: 748  RMLPKDDAVQKVVEFMDLYSISQEDFDTIVELSKFQGHPSPLEGIQPAVKSALTKAYNKG 807

Query: 522  SSLRVVRAADMITLPGMKKAPKKRIAAILEPVDEALA-ENGDASAESGEENSETEDTDGF 346
            SS R+VRAAD+ITLPG+KKAPKKRIAAILEPVD+ LA ENGDA AES EENS   D    
Sbjct: 808  SSSRLVRAADLITLPGIKKAPKKRIAAILEPVDDELARENGDALAESEEENSSDTDDMDT 867

Query: 345  ENVEXXXXXXXXXXXXKGIQVKLEL 271
             N +            KGI+V+L+L
Sbjct: 868  ANGDKKLPVDLQNLNSKGIKVELDL 892


>ref|XP_003527511.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
          Length = 947

 Score =  979 bits (2532), Expect = 0.0
 Identities = 523/780 (67%), Positives = 592/780 (75%), Gaps = 1/780 (0%)
 Frame = -3

Query: 2685 GRGRGGVAKKSVYKAENDEEYVDDEQASTPVKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2506
            G GRG + KKS    E+DE+  DD+ A +  K                            
Sbjct: 112  GSGRG-IPKKSAVLEESDED--DDKDAVSAAKSAGRGGGGGGRGAPGRSTGGRGRGGGRG 168

Query: 2505 GFMNFGERKDPPHKGEKEVPEGAPECLAGQTFVISGTLDSLEREEAEDLIKRHGGRVTGS 2326
            GFMNFGERKDPPHKGEKEVPEGAP+CLAG TFVISGTLDSLEREEAEDLIKRHGGRVTGS
Sbjct: 169  GFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 228

Query: 2325 VSKKTNYLLVDEDIGGRKSEKAKELGTKFITEDGLFDMIRKSRXXXXXXXXXXXXXTADM 2146
            VSKKTNYLL DEDIGGRKSEKAKELGT F+TEDGLFDMIR S+                +
Sbjct: 229  VSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKASSQEDKKLVNKAV 288

Query: 2145 VLASQPKASPSKIEAKDDYRAKKAAPKGIASGASPAKHKGQATGRGSLTWTEKYKPKVPN 1966
             +ASQ K SP            K  P    S +  AK K   T + S  WTEKY+PK P 
Sbjct: 289  AVASQSKVSPKS--------QVKGKPLSSRSPSKQAKPKTATTVQSSSMWTEKYRPKDPK 340

Query: 1965 DIIGNQSIVKQLQEWLMHWDDKNLHTGPKEKGKKQNDSGSKKAVLLSGTPGIGKSTSAKL 1786
            DIIGNQS+V QL+ WL  W++  L TG K++GKKQNDSG KKAVLLSGTPGIGK+TSAKL
Sbjct: 341  DIIGNQSLVLQLRNWLKAWNEHFLDTGNKKQGKKQNDSGLKKAVLLSGTPGIGKTTSAKL 400

Query: 1785 VSQMLGFQAIEVNASDSRGKADAKIVKGIGGSTANSVKELVSSGSLNVNMDRAKHPKSVL 1606
            V Q LGFQAIEVNASDSRGKAD+KI KGI GS  NSVKELV++ ++ VNM+R+KH KSVL
Sbjct: 401  VCQELGFQAIEVNASDSRGKADSKIEKGISGSKTNSVKELVTNEAIGVNMERSKHYKSVL 460

Query: 1605 IMDEVDGMSAGDRGGVADLXXXXXXXXXXXXXXCNDRYSQKLKSLVNYCLPLNYRKPTKQ 1426
            IMDEVDGMSAGDRGGVADL              CNDRYSQKLKSLVNYCL L++RKPTKQ
Sbjct: 461  IMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQ 520

Query: 1425 QMAKRLMQVANAEGLQVKEIALEELAERVNGDMRMAINQLQYMSLSLSVINYDDMRQRLL 1246
            QMAKRLM V+ AE LQV EIALEELAERVNGDMRMA+NQLQYMSLS+SVINYDD+RQR L
Sbjct: 521  QMAKRLMDVSKAERLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVINYDDIRQRFL 580

Query: 1245 SSAKDEDISPFAAVDKLFSFNGGKLRMDERMDLSMSDPDLVPLIIQENYLNFRPSSAGKD 1066
            ++AKDEDISPF AVDKLF FN GKL+MDER++LSMSDPDLVPLIIQENY+N+RPS AGKD
Sbjct: 581  TNAKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLIIQENYINYRPSLAGKD 640

Query: 1065 DNGIKRLNLIARAAESIGNGDIINVQIRRYRQWQXXXXXXXXXXXXXXXXLRGSREVLQQ 886
            D+GIKR+NLIARAAESI +GDI+NVQIRRYRQWQ                L G RE+L+Q
Sbjct: 641  DSGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSLATSIIPASLLHGQREILEQ 700

Query: 885  GERNFNRFGGWLGKNSTMGKNSRLLDDVHVHLLSSREIVSNRVSLRVDYVSLILKHLTDP 706
            GERNFNRFGGWLGKNSTMGKN RLLDD+HVH+L+SRE  S R ++R++Y++L+LK +T+P
Sbjct: 701  GERNFNRFGGWLGKNSTMGKNLRLLDDLHVHILASRESSSGRDTIRMEYLTLLLKEMTEP 760

Query: 705  LRTLPKEEAVQKVVEFMDTYSINMDDLDTIAELSKFQGHPNPLDGIPPAVKGALTKAYKQ 526
            LRTLPK EAVQ+VVE M+TYSI+ +D DTI ELSKF+GHPNPLDGI PAVK ALTKAYK+
Sbjct: 761  LRTLPKAEAVQQVVELMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKAYKE 820

Query: 525  GSSLRVVRAADMITLPGMKKAPKKRIAAILEPVDEALAE-NGDASAESGEENSETEDTDG 349
             SS RVVR AD+ITLPG+KK PKKRIAAILEP  E + +  GD   ES EENS   +  G
Sbjct: 821  QSSSRVVRVADLITLPGVKKVPKKRIAAILEPAGEEVEKGEGDTLDESEEENSSDNEELG 880


>ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
          Length = 1112

 Score =  974 bits (2517), Expect = 0.0
 Identities = 520/781 (66%), Positives = 597/781 (76%), Gaps = 2/781 (0%)
 Frame = -3

Query: 2685 GRGRGGVAKKSVYKAENDEEYVDDEQASTPVKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2506
            G GRG + +KS    E+DE+  DD+ A +  K                            
Sbjct: 281  GSGRG-LPQKSAVLEESDED--DDKDAVSAAKSAGRGDGGRGAPGRSTSGRGRGGGRGG- 336

Query: 2505 GFMNFGERKDPPHKGEKEVPEGAPECLAGQTFVISGTLDSLEREEAEDLIKRHGGRVTGS 2326
             FMNFGERKDPPHKGEKEVPEGAP+CLAG TFVISGTLDSLEREEAEDLIKRHGGRVTGS
Sbjct: 337  -FMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGS 395

Query: 2325 VSKKTNYLLVDEDIGGRKSEKAKELGTKFITEDGLFDMIRKSRXXXXXXXXXXXXXTADM 2146
            VSKKTNYLL DEDIGGRKSEKAK+LGT F+TEDGLFDMIR S+                +
Sbjct: 396  VSKKTNYLLCDEDIGGRKSEKAKQLGTSFLTEDGLFDMIRGSKPAKAPSQEDKKPVNKAV 455

Query: 2145 VLASQPKASPSKIEAKDDYRAKKAAPKGIASGASPAKHKGQATGRGSLTWTEKYKPKVPN 1966
             +ASQ K SP         ++  A P    S ++ AK K   T + SL WTEKY+PK P 
Sbjct: 456  AVASQSKVSPKS-------QSTNAVPLSSRSPSNQAKPKTATTVQSSLMWTEKYRPKDPK 508

Query: 1965 DIIGNQSIVKQLQEWLMHWDDKNLHTGPKEKGKKQNDSGSKKAVLLSGTPGIGKSTSAKL 1786
            DIIGNQS+V QL+ WL  W++  L TG K++GKKQNDSG KKAVLLSGTPGIGK+TSA L
Sbjct: 509  DIIGNQSLVLQLRNWLKAWNEHFLDTGNKKQGKKQNDSGLKKAVLLSGTPGIGKTTSATL 568

Query: 1785 VSQMLGFQAIEVNASDSRGKADAKIVKGIGGSTANSVKELVSSGSLNVNMDRAKHPKSVL 1606
            V Q LGFQAIEVNASDSRGKAD+KI KGI GS  NSVKELV++ ++ +NM R+KH KSVL
Sbjct: 569  VCQELGFQAIEVNASDSRGKADSKIEKGISGSKTNSVKELVTNEAIGINMGRSKHYKSVL 628

Query: 1605 IMDEVDGMSAGDRGGVADLXXXXXXXXXXXXXXCNDRYSQKLKSLVNYCLPLNYRKPTKQ 1426
            IMDEVDGMSAGDRGGVADL              CNDRYSQKLKSLVNYCL L++RKPTKQ
Sbjct: 629  IMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQ 688

Query: 1425 QMAKRLMQVANAEGLQVKEIALEELAERVNGDMRMAINQLQYMSLSLSVINYDDMRQRLL 1246
            QMAKRLM VA AE LQV EIALEELAERVNGDMRMA+NQLQYMSLS+S+INYDD+RQR L
Sbjct: 689  QMAKRLMDVAKAERLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSIINYDDIRQRFL 748

Query: 1245 SSAKDEDISPFAAVDKLFSFNGGKLRMDERMDLSMSDPDLVPLIIQENYLNFRPSSAGKD 1066
            ++AKDEDISPF AVDKLF FN GKL+MDER++LSMSDPDLVPLIIQENY+N+RPS AGKD
Sbjct: 749  TNAKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLIIQENYINYRPSMAGKD 808

Query: 1065 DNGIKRLNLIARAAESIGNGDIINVQIRRYRQWQXXXXXXXXXXXXXXXXLRGSREVLQQ 886
            D+GIKR+NLIARAAESI +GDI+NVQIRRYRQWQ                L G RE+L+Q
Sbjct: 809  DSGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVATSIIPASLLHGQREILEQ 868

Query: 885  GERNFNRFGGWLGKNSTMGKNSRLLDDVHVHLLSSREIVSNRVSLRVDYVSLILKHLTDP 706
            GERNFNRFGGWLGKNSTMGKN RLLDD+HVH+L+SRE  S R ++R++Y++L+LK +T+ 
Sbjct: 869  GERNFNRFGGWLGKNSTMGKNLRLLDDLHVHILASRESSSGRDTIRMEYLTLLLKQMTET 928

Query: 705  LRTLPKEEAVQKVVEFMDTYSINMDDLDTIAELSKFQGHPNPLDGIPPAVKGALTKAYKQ 526
            LRTLPK EAVQ+VVEFM+TYSI+ +D DTI ELSKF+GHPNPLDGI PAVK ALTK YK+
Sbjct: 929  LRTLPKAEAVQQVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKEYKE 988

Query: 525  GSSLRVVRAADMITLPGMKKAPKKRIAAILEPVDEALAE-NGDASAESGEEN-SETEDTD 352
             S+ RVVR AD+ITLPG+KK PKKRIAAILEP  E + +  GDA  ES EEN S+TE+ +
Sbjct: 989  QSTSRVVRVADLITLPGVKKVPKKRIAAILEPAGEEVEKGEGDALDESEEENSSDTEELE 1048

Query: 351  G 349
            G
Sbjct: 1049 G 1049


>dbj|BAC76085.1| replication factor C 110 kDa subunit [Oryza sativa Japonica Group]
          Length = 1021

 Score =  971 bits (2511), Expect = 0.0
 Identities = 508/811 (62%), Positives = 603/811 (74%), Gaps = 5/811 (0%)
 Frame = -3

Query: 2688 GGRGRGGVAKKSVYKAENDEEYVDDEQASTPVKXXXXXXXXXXXXXXXXXXXXXXXXXXX 2509
            GGRG G    K++   ++ EE   DE A TP K                           
Sbjct: 183  GGRGAGAAHGKTIGLDDDGEEDKMDEDAKTPSKAAGRGRGGASGGRGRGGGGRG------ 236

Query: 2508 XGFMNFGERKDPPHKGEKEVPEGAPECLAGQTFVISGTLDSLEREEAEDLIKRHGGRVTG 2329
              FMNFGERKDPPHKGEKEVPEGAP+CL G TFVISGTLDSLEREEA DLIKR+GGRVTG
Sbjct: 237  --FMNFGERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTG 294

Query: 2328 SVSKKTNYLLVDEDIGGRKSEKAKELGTKFITEDGLFDMIRKSRXXXXXXXXXXXXXTAD 2149
            S+SKKTNYLL DED+GG KS KAKELG  F+TEDGLFDMIRKS+              ++
Sbjct: 295  SISKKTNYLLADEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSDKNSE 354

Query: 2148 MVLASQPKASPSKIEAKDDYR---AKKAAPKGIASGASPAKHKGQATGRGSLTWTEKYKP 1978
                S  K+SP K+E +D  +    K  +PK     AS    K     RGSL WTEKY+P
Sbjct: 355  KQQKSPMKSSPVKVERRDGNQITTGKNISPKSNKGSASIDNQKVNIVDRGSLQWTEKYRP 414

Query: 1977 KVPNDIIGNQSIVKQLQEWLMHWDDKNLHTGPKEKGKKQNDSGSKKAVLLSGTPGIGKST 1798
            KVPNDI+GNQS+VKQL +WL  W+D+ LH+G K KGKKQ DSG+KKAVLLSG PGIGK+T
Sbjct: 415  KVPNDIVGNQSMVKQLHDWLKSWEDQFLHSGQKGKGKKQADSGAKKAVLLSGPPGIGKTT 474

Query: 1797 SAKLVSQMLGFQAIEVNASDSRGKADAKIVKGIGGSTANSVKELVSSGSLNVNMDRAKHP 1618
            +AK+VSQMLG QAIEVNASDSRGKAD+KI KG+GGST+NS+KEL+S+ +LN + +R K P
Sbjct: 475  TAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNATLNYSNNRLKRP 534

Query: 1617 KSVLIMDEVDGMSAGDRGGVADLXXXXXXXXXXXXXXCNDRYSQKLKSLVNYCLPLNYRK 1438
            K+VL+MDEVDGMSAGDRGGVADL              CNDRYSQKLKSLVNYCL LN+RK
Sbjct: 535  KAVLVMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLLLNFRK 594

Query: 1437 PTKQQMAKRLMQVANAEGLQVKEIALEELAERVNGDMRMAINQLQYMSLSLSVINYDDMR 1258
            PTKQQM KRLM++A  EGLQ +E A+EELAERV+GD+RMA+N LQYMSLS SV+ YDD+R
Sbjct: 595  PTKQQMGKRLMEIAKKEGLQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIR 654

Query: 1257 QRLLSSAKDEDISPFAAVDKLFSFNGGKLRMDERMDLSMSDPDLVPLIIQENYLNFRPSS 1078
            QRL SS KDEDISPF AVDKLF FNGG+LRMDER+DLSMSDPDLVPLIIQENY+N+RP +
Sbjct: 655  QRLNSSTKDEDISPFTAVDKLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPIT 714

Query: 1077 AGKDDNGIKRLNLIARAAESIGNGDIINVQIRRYRQWQXXXXXXXXXXXXXXXXLRGSRE 898
             GKDD+G+KR+N +ARAAESI + DI+NVQIRRYRQWQ                + G+RE
Sbjct: 715  VGKDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNRE 774

Query: 897  VLQQGERNFNRFGGWLGKNSTMGKNSRLLDDVHVHLLSSREIVSNRVSLRVDYVSLILKH 718
            +L+ GERNFNRFGGWLGK ST  KN RLL+D H H+L+S++   +R SLR+DY++L+L+ 
Sbjct: 775  ILEAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQ 834

Query: 717  LTDPLRTLPKEEAVQKVVEFMDTYSINMDDLDTIAELSKFQGHPNPLDGIPPAVKGALTK 538
            LTDPL+T+PK+EAVQKVVEFMDTYS++ +D DTI ELSKF+GHPNP+DGI PAVK ALTK
Sbjct: 835  LTDPLKTMPKDEAVQKVVEFMDTYSLSQEDFDTIVELSKFKGHPNPMDGIQPAVKSALTK 894

Query: 537  AYKQGSSLRVVRAADMITLPGMKKAPKKRIAAILEPVDEAL-AENGDASAESGEE-NSET 364
            AYKQGSS RVVRAAD++ +PGMKK  KKR+AAILEPV E+L  ENG AS+E  EE +S+ 
Sbjct: 895  AYKQGSSSRVVRAADLVNIPGMKKPLKKRVAAILEPVGESLPEENGVASSEGDEEDSSDA 954

Query: 363  EDTDGFENVEXXXXXXXXXXXXKGIQVKLEL 271
            E+ D     +            KGIQV+L+L
Sbjct: 955  ENNDELVPGDTKPKLDLQSDKKKGIQVQLDL 985