BLASTX nr result
ID: Cimicifuga21_contig00002409
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00002409
(2278 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methy... 778 0.0
ref|XP_002300381.1| predicted protein [Populus trichocarpa] gi|2... 746 0.0
ref|XP_003519634.1| PREDICTED: ribosomal RNA small subunit methy... 734 0.0
ref|XP_003617839.1| Ribosomal RNA small subunit methyltransferas... 732 0.0
ref|NP_187924.2| ribosomal RNA small subunit methyltransferase B... 732 0.0
>ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methyltransferase B [Vitis
vinifera] gi|296089930|emb|CBI39749.3| unnamed protein
product [Vitis vinifera]
Length = 525
Score = 778 bits (2009), Expect = 0.0
Identities = 396/495 (80%), Positives = 430/495 (86%), Gaps = 3/495 (0%)
Frame = -1
Query: 2050 PLVVKKNTDYDVNPQSPLVKKKN---THMLNLHVSPHRAVSAVRLMRIEFGGAFADLLNK 1880
PL V K P ++N T+ +NL +SPHRAVSAVRLMRIE GGAFADLLN+
Sbjct: 23 PLKVAKTRPNTAIPTRSTGTRRNANRTYGVNLEISPHRAVSAVRLMRIELGGAFADLLNE 82
Query: 1879 KGKGSGANEMGYVERTLGFRTRPLDDKDLRLVTVIVGGAIRWRRYLDHLIVSLCHDDKSF 1700
+GKGSG NEMGYVERTLGFRTR LDD+DLRLVT IVGG+IRWRRYLDHLIVSLCHD K+F
Sbjct: 83 RGKGSGDNEMGYVERTLGFRTRDLDDRDLRLVTDIVGGSIRWRRYLDHLIVSLCHDSKTF 142
Query: 1699 RAMEPLLLQILRIGFYEILKLDMPPYAVVDENVKLAKVALRPGAGNMVNGILRRLVLLKE 1520
R+MEPLLLQILRIGFYEI+ LDMPPYAVVDENV+LAKVALRPGAGNMVN ILR+LVLLKE
Sbjct: 143 RSMEPLLLQILRIGFYEIVNLDMPPYAVVDENVRLAKVALRPGAGNMVNAILRKLVLLKE 202
Query: 1519 ADSLPLPKVEGNDRMQARALATLYSHPVWMVRRWLKCFGQEEAKRLMTWNNSDPSFSLRA 1340
+SLPLPK+EG+DR QARALATLYSHPVWMVRRW K GQEEA +LM WNNS+PSFSLRA
Sbjct: 203 KNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMMWNNSEPSFSLRA 262
Query: 1339 NTAKGFARADLVKRLEMLKVPHELSLCLDDFVRITTGMQVVIQAGLLKEGLCSVQDESTG 1160
N+ KGF RADLV RL+MLKVPHELS LD+FVRI TGMQ+VIQA LLKEGLCSVQDES G
Sbjct: 263 NSGKGFTRADLVMRLKMLKVPHELSPHLDNFVRIRTGMQIVIQAQLLKEGLCSVQDESAG 322
Query: 1159 LVVSVVDPQPGETIVDCCAAPGGKTLFMASRLRGQGMVCAIDINEGRLRILKETAKLHKV 980
LVVSVVDPQPGE+I+DCCAAPGGKT+FMAS L GQGMV AIDIN+GRLRI+KETAKL V
Sbjct: 323 LVVSVVDPQPGESIIDCCAAPGGKTIFMASCLSGQGMVHAIDINKGRLRIVKETAKLLLV 382
Query: 979 DDVIFTVHADLRIFVGNNTVKYDKVLLDTPCSGLGVLSKRADLRWNRRLEDMEQLKSLQD 800
DDVI TVHADL F NN VK DKVLLD PCSGLGVLSKRADLRWNR LEDMEQLK+LQD
Sbjct: 383 DDVITTVHADLCTFAKNNPVKSDKVLLDAPCSGLGVLSKRADLRWNRSLEDMEQLKNLQD 442
Query: 799 ELLDAASMLVKPGGILVYSTCSIDPEENEERVALFLQKHPEFCIDSASGYVPSDFVTEAG 620
ELLDAA++LVKPGG+LVYSTCSIDPEENEERVA FLQ+HPEF ID YVPSDFVTE G
Sbjct: 443 ELLDAAAILVKPGGVLVYSTCSIDPEENEERVAAFLQRHPEFSIDPVGRYVPSDFVTEGG 502
Query: 619 FCFSNPVKHGLDGSF 575
F FSNPVKH LDG+F
Sbjct: 503 FYFSNPVKHALDGAF 517
>ref|XP_002300381.1| predicted protein [Populus trichocarpa] gi|222847639|gb|EEE85186.1|
predicted protein [Populus trichocarpa]
Length = 527
Score = 746 bits (1926), Expect = 0.0
Identities = 371/480 (77%), Positives = 422/480 (87%)
Frame = -1
Query: 2014 NPQSPLVKKKNTHMLNLHVSPHRAVSAVRLMRIEFGGAFADLLNKKGKGSGANEMGYVER 1835
+PQSPL K T LNL VSPHRAVSAVRLMRIE GGAFADLLN KGKGSG NEMGYVER
Sbjct: 43 SPQSPLRK---TQKLNLQVSPHRAVSAVRLMRIEMGGAFADLLNDKGKGSGDNEMGYVER 99
Query: 1834 TLGFRTRPLDDKDLRLVTVIVGGAIRWRRYLDHLIVSLCHDDKSFRAMEPLLLQILRIGF 1655
TLGFRT+ LDD+DLRLVT IVGG IRWRRYLD+LI SLCHD+K+FR+MEPLLLQILRIGF
Sbjct: 100 TLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDYLIGSLCHDEKAFRSMEPLLLQILRIGF 159
Query: 1654 YEILKLDMPPYAVVDENVKLAKVALRPGAGNMVNGILRRLVLLKEADSLPLPKVEGNDRM 1475
YEI+KLDMP YAVVDENV+LAKV+LRPGAGNMVNGILR+LVLLKE++SLPLPK+EG+DR
Sbjct: 160 YEIVKLDMPSYAVVDENVRLAKVSLRPGAGNMVNGILRKLVLLKESNSLPLPKLEGDDRA 219
Query: 1474 QARALATLYSHPVWMVRRWLKCFGQEEAKRLMTWNNSDPSFSLRANTAKGFARADLVKRL 1295
QARALATLYSHPVWMVRRW K GQE+A +LM WNN +PSFSLRAN+ KG RADLV +
Sbjct: 220 QARALATLYSHPVWMVRRWTKLLGQEKAIKLMMWNNDNPSFSLRANSGKGVTRADLVMQF 279
Query: 1294 EMLKVPHELSLCLDDFVRITTGMQVVIQAGLLKEGLCSVQDESTGLVVSVVDPQPGETIV 1115
MLKVPHELSL LD FVR+ TG+Q+VIQAGLLK+GLC+VQDES GL+VSVV+PQPG++I+
Sbjct: 280 NMLKVPHELSLHLDHFVRVKTGLQIVIQAGLLKQGLCAVQDESAGLIVSVVNPQPGDSII 339
Query: 1114 DCCAAPGGKTLFMASRLRGQGMVCAIDINEGRLRILKETAKLHKVDDVIFTVHADLRIFV 935
DCCAAPGGKTL+MAS++ GQGM+ AIDIN+GRLRI+KETAKLH+VD VI T+ +DLR F
Sbjct: 340 DCCAAPGGKTLYMASQMHGQGMLYAIDINKGRLRIVKETAKLHQVDGVITTIPSDLRTFA 399
Query: 934 GNNTVKYDKVLLDTPCSGLGVLSKRADLRWNRRLEDMEQLKSLQDELLDAASMLVKPGGI 755
+ +K DKVLLD PCSGLGVLSKRADLRWNRRLED+E+LK LQ+ELLDAAS+LVKPGG+
Sbjct: 400 ESYQLKSDKVLLDAPCSGLGVLSKRADLRWNRRLEDLEELKKLQEELLDAASILVKPGGV 459
Query: 754 LVYSTCSIDPEENEERVALFLQKHPEFCIDSASGYVPSDFVTEAGFCFSNPVKHGLDGSF 575
LVYSTCSIDPEENEERV FL +HPEF ID YVP DFVT+ GF S+PVKH +DG+F
Sbjct: 460 LVYSTCSIDPEENEERVDAFLLRHPEFRIDPVDRYVPPDFVTKRGFYSSDPVKHSMDGAF 519
>ref|XP_003519634.1| PREDICTED: ribosomal RNA small subunit methyltransferase B-like
[Glycine max]
Length = 528
Score = 734 bits (1896), Expect = 0.0
Identities = 378/510 (74%), Positives = 417/510 (81%), Gaps = 6/510 (1%)
Frame = -1
Query: 2086 AAHKQSNSNPNFPLVVKKNTDYDVNPQSPLVKKKN------THMLNLHVSPHRAVSAVRL 1925
A S+S+P+ PL + T N P K T LN VSPHRAVSAVRL
Sbjct: 13 APSSSSSSSPSKPLKLPHRT-CSTNISIPSTAKGGGNRLLKTQKLNSEVSPHRAVSAVRL 71
Query: 1924 MRIEFGGAFADLLNKKGKGSGANEMGYVERTLGFRTRPLDDKDLRLVTVIVGGAIRWRRY 1745
MRIE GGAFADLLN+KGKGSG NEMGYV+RTLGFRTR L+ DLRLVT IVGG IRWRRY
Sbjct: 72 MRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRY 131
Query: 1744 LDHLIVSLCHDDKSFRAMEPLLLQILRIGFYEILKLDMPPYAVVDENVKLAKVALRPGAG 1565
LDHLI SLCHD K +MEPLLLQILRIGFYEI+KLDMPPYAVVDENVKLAK ALRPGAG
Sbjct: 132 LDHLISSLCHD-KDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVKLAKFALRPGAG 190
Query: 1564 NMVNGILRRLVLLKEADSLPLPKVEGNDRMQARALATLYSHPVWMVRRWLKCFGQEEAKR 1385
NMVNGILR+LV+LKE +SLPLPKVEG+DR QARALATLYSHPVWMVRRW K GQEEA +
Sbjct: 191 NMVNGILRKLVVLKEKESLPLPKVEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIK 250
Query: 1384 LMTWNNSDPSFSLRANTAKGFARADLVKRLEMLKVPHELSLCLDDFVRITTGMQVVIQAG 1205
LM WNNS+PSFSLRAN A+GF+R DLV +L LKVPH+LS LD+FVRI TG+Q++IQAG
Sbjct: 251 LMIWNNSEPSFSLRANRARGFSRDDLVTQLNALKVPHKLSPHLDEFVRIKTGLQIIIQAG 310
Query: 1204 LLKEGLCSVQDESTGLVVSVVDPQPGETIVDCCAAPGGKTLFMASRLRGQGMVCAIDINE 1025
LLK+GLCSVQDES GLVVSVVDPQPGETI+DCCAAPGGKTL+MAS L GQG V AID+N
Sbjct: 311 LLKKGLCSVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLYMASHLSGQGKVFAIDVNS 370
Query: 1024 GRLRILKETAKLHKVDDVIFTVHADLRIFVGNNTVKYDKVLLDTPCSGLGVLSKRADLRW 845
GRLRILKETAKLH+VD VI +HADLR + +K +KVLLD PCSGLGVLSKRADLRW
Sbjct: 371 GRLRILKETAKLHQVDGVITAIHADLRTLPDSGQLKSNKVLLDAPCSGLGVLSKRADLRW 430
Query: 844 NRRLEDMEQLKSLQDELLDAASMLVKPGGILVYSTCSIDPEENEERVALFLQKHPEFCID 665
N+ LEDMEQLK LQDELLDAAS LVKPGG+LVYSTCSIDPEEN++RV FL +H +F ID
Sbjct: 431 NKNLEDMEQLKELQDELLDAASKLVKPGGVLVYSTCSIDPEENDDRVVAFLARHSDFHID 490
Query: 664 SASGYVPSDFVTEAGFCFSNPVKHGLDGSF 575
YVP DF T +GF FSNPVKH LDGSF
Sbjct: 491 PVDRYVPPDFETSSGFFFSNPVKHSLDGSF 520
>ref|XP_003617839.1| Ribosomal RNA small subunit methyltransferase [Medicago truncatula]
gi|355519174|gb|AET00798.1| Ribosomal RNA small subunit
methyltransferase [Medicago truncatula]
Length = 654
Score = 732 bits (1889), Expect = 0.0
Identities = 363/466 (77%), Positives = 404/466 (86%)
Frame = -1
Query: 1972 LNLHVSPHRAVSAVRLMRIEFGGAFADLLNKKGKGSGANEMGYVERTLGFRTRPLDDKDL 1793
LN +SPHRAVSAVRLMRIE GGAFADLLN+KGKGSG NEMGYV+RTLGFRTR L+++DL
Sbjct: 57 LNSDISPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNNQDL 116
Query: 1792 RLVTVIVGGAIRWRRYLDHLIVSLCHDDKSFRAMEPLLLQILRIGFYEILKLDMPPYAVV 1613
RLVT IVGG IRWRRYLDHLI SLCHD K +MEPLLLQILRIGFYEI+KLDMPPYAVV
Sbjct: 117 RLVTEIVGGTIRWRRYLDHLISSLCHD-KDISSMEPLLLQILRIGFYEIVKLDMPPYAVV 175
Query: 1612 DENVKLAKVALRPGAGNMVNGILRRLVLLKEADSLPLPKVEGNDRMQARALATLYSHPVW 1433
DENV+LAK ALRPGAGNMVNG+LR+LV+LKE ++LPLPKVEG+DR QARALATLYSHPVW
Sbjct: 176 DENVQLAKAALRPGAGNMVNGVLRKLVVLKENETLPLPKVEGDDRSQARALATLYSHPVW 235
Query: 1432 MVRRWLKCFGQEEAKRLMTWNNSDPSFSLRANTAKGFARADLVKRLEMLKVPHELSLCLD 1253
+VRRW K GQEEA +LM WNN +PS+SLRAN AKGF+R DLV L LKVPH+LSL LD
Sbjct: 236 IVRRWTKYLGQEEAIKLMIWNNIEPSYSLRANRAKGFSRDDLVTELNALKVPHKLSLHLD 295
Query: 1252 DFVRITTGMQVVIQAGLLKEGLCSVQDESTGLVVSVVDPQPGETIVDCCAAPGGKTLFMA 1073
DFVRI TG+Q++I AGL KEGLCSVQDES GL+VS+VDPQPGETIVDCCAAPGGKTL+MA
Sbjct: 296 DFVRIKTGLQIIIHAGLFKEGLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMA 355
Query: 1072 SRLRGQGMVCAIDINEGRLRILKETAKLHKVDDVIFTVHADLRIFVGNNTVKYDKVLLDT 893
+ L GQGMV A+D+N GRLRILKETAKLH+VD V+ TVHADLR +K +KVLLD
Sbjct: 356 AHLSGQGMVYAVDVNSGRLRILKETAKLHQVDGVVTTVHADLRTLTDGEPLKSNKVLLDA 415
Query: 892 PCSGLGVLSKRADLRWNRRLEDMEQLKSLQDELLDAASMLVKPGGILVYSTCSIDPEENE 713
PCSGLGVLSKRADLRWNR+LEDMEQLK LQDELLDAAS LVKPGG+LVYSTCSIDPEEN+
Sbjct: 416 PCSGLGVLSKRADLRWNRKLEDMEQLKKLQDELLDAASTLVKPGGVLVYSTCSIDPEEND 475
Query: 712 ERVALFLQKHPEFCIDSASGYVPSDFVTEAGFCFSNPVKHGLDGSF 575
+RVA FL++H +F ID YVP DFVT GF SNPVKH LDGSF
Sbjct: 476 DRVAAFLERHADFHIDPVDRYVPPDFVTPKGFYSSNPVKHSLDGSF 521
>ref|NP_187924.2| ribosomal RNA small subunit methyltransferase B [Arabidopsis
thaliana] gi|18176252|gb|AAL60011.1| putative sun protein
fmu [Arabidopsis thaliana] gi|21436219|gb|AAM51397.1|
putative sun protein fmu [Arabidopsis thaliana]
gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein
[Arabidopsis thaliana] gi|332641785|gb|AEE75306.1|
ribosomal RNA small subunit methyltransferase B
[Arabidopsis thaliana]
Length = 523
Score = 732 bits (1889), Expect = 0.0
Identities = 362/504 (71%), Positives = 418/504 (82%)
Frame = -1
Query: 2086 AAHKQSNSNPNFPLVVKKNTDYDVNPQSPLVKKKNTHMLNLHVSPHRAVSAVRLMRIEFG 1907
+A Q S +F K + + + P+ + + LNL VSPHRAVSAVRLMRIE+G
Sbjct: 12 SAETQKASPGSFKRTQKTRKPFSPDRRGPVAPSRKSQNLNLEVSPHRAVSAVRLMRIEYG 71
Query: 1906 GAFADLLNKKGKGSGANEMGYVERTLGFRTRPLDDKDLRLVTVIVGGAIRWRRYLDHLIV 1727
GAFADLLN+KGKGSG+NEM YVERT+GFRTR LDD+DLRLVT +VGG IRWRRYLDHLI
Sbjct: 72 GAFADLLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVTDVVGGTIRWRRYLDHLIG 131
Query: 1726 SLCHDDKSFRAMEPLLLQILRIGFYEILKLDMPPYAVVDENVKLAKVALRPGAGNMVNGI 1547
SLCH++++FR MEPLLLQILRIG YEI+K DMPPYAVVDENV+LAKVALRPGAG+ VNGI
Sbjct: 132 SLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRLAKVALRPGAGDFVNGI 191
Query: 1546 LRRLVLLKEADSLPLPKVEGNDRMQARALATLYSHPVWMVRRWLKCFGQEEAKRLMTWNN 1367
LR+LV LKE D+LPLPKVEG+DR QARALATL+SHPVWMVRRW+K G +EA +LM WNN
Sbjct: 192 LRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWVKYLGLDEATKLMIWNN 251
Query: 1366 SDPSFSLRANTAKGFARADLVKRLEMLKVPHELSLCLDDFVRITTGMQVVIQAGLLKEGL 1187
+DP FSLRANT + RADLV+RL LKVPHELSL L++FVRI TG+Q V+QAGLLKEG+
Sbjct: 252 NDPGFSLRANTGRDITRADLVERLNSLKVPHELSLHLEEFVRIKTGLQTVVQAGLLKEGI 311
Query: 1186 CSVQDESTGLVVSVVDPQPGETIVDCCAAPGGKTLFMASRLRGQGMVCAIDINEGRLRIL 1007
CSVQDES GL+VSVV PQPGE I+D CAAPGGKTLFMAS L+GQGM+ A+D+NEGRLRIL
Sbjct: 312 CSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGMIYAMDVNEGRLRIL 371
Query: 1006 KETAKLHKVDDVIFTVHADLRIFVGNNTVKYDKVLLDTPCSGLGVLSKRADLRWNRRLED 827
ETAK H+VD +I T+H+DLR+F N V+YDKVLLD PCSGLGVLSKRADLRWNR+LED
Sbjct: 372 GETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPCSGLGVLSKRADLRWNRKLED 431
Query: 826 MEQLKSLQDELLDAASMLVKPGGILVYSTCSIDPEENEERVALFLQKHPEFCIDSASGYV 647
M +L LQDELLD+AS LVK GG+LVYSTCSIDPEENE RV FL +HPEF ID + +V
Sbjct: 432 MLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEAFLLRHPEFTIDPVTSFV 491
Query: 646 PSDFVTEAGFCFSNPVKHGLDGSF 575
PS FVT GF SNPVKH LDG+F
Sbjct: 492 PSSFVTSQGFFLSNPVKHSLDGAF 515