BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00002394
         (1042 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285435.1| PREDICTED: exosome complex component RRP42 [...   455   e-126
ref|XP_003548054.1| PREDICTED: exosome complex component RRP42-l...   449   e-124
ref|XP_002321194.1| predicted protein [Populus trichocarpa] gi|2...   447   e-123
ref|XP_003518190.1| PREDICTED: exosome complex component RRP42-l...   444   e-122
gb|ACG32102.1| exosome complex exonuclease RRP42 [Zea mays] gi|4...   441   e-121

>ref|XP_002285435.1| PREDICTED: exosome complex component RRP42 [Vitis vinifera]
           gi|296082105|emb|CBI21110.3| unnamed protein product
           [Vitis vinifera]
          Length = 287

 Score =  455 bits (1171), Expect = e-126
 Identities = 236/287 (82%), Positives = 254/287 (88%)
 Frame = +1

Query: 34  MVGLSVGEKHFIEGGIAQDLRSDGRKRLTYRPISVETGVIPQASGSARVKLGATDVIASV 213
           MVGLSVGEKHFI+GGIAQDLR+DGR+RLTYRP +VETGVIPQA+GSARV+LG TDVIASV
Sbjct: 1   MVGLSVGEKHFIQGGIAQDLRTDGRRRLTYRPFNVETGVIPQANGSARVRLGGTDVIASV 60

Query: 214 KAELGKPNYLYPDKGKVAIYVDCSPTAAPVFEGRGGEELSAELSAALQRCLLGGKSGAGA 393
           KAELGKP+   PDKGKV IYVDCSPTAAP+FEGRGGEELS ELS ALQ CLLGGKSGAGA
Sbjct: 61  KAELGKPSPSQPDKGKVNIYVDCSPTAAPMFEGRGGEELSTELSGALQHCLLGGKSGAGA 120

Query: 394 GINLSSLIVMEGKMCWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVAVGASAX 573
           GI+LSSL+V+EGK+CWDLYIDGLVVSSDGNLLDALGAAIKAAL+NTGIPKV VAVGAS  
Sbjct: 121 GIDLSSLVVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALTNTGIPKVEVAVGASGD 180

Query: 574 XXXXXXXXXXXFLQFDTSGVPVIVTLTKVGRHYIADATLEEESQMSSALSVSVDRHGHIC 753
                      +LQFDTSGVPVIVTLTKVGRHYI DATLEEESQMSSA+SVSV   G IC
Sbjct: 181 GLPEVDISDDEYLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAVSVSVSGQGRIC 240

Query: 754 GLTKRGGAGLDPSVILDMISVAKHVSEQLIAQLDSKISAAEVDEAES 894
           GL KRGGAGLDPSVILDMISVAKHVSEQL+ +LDS+ISAAE  E ES
Sbjct: 241 GLIKRGGAGLDPSVILDMISVAKHVSEQLMNKLDSEISAAEAFEEES 287


>ref|XP_003548054.1| PREDICTED: exosome complex component RRP42-like [Glycine max]
          Length = 286

 Score =  449 bits (1154), Expect = e-124
 Identities = 229/284 (80%), Positives = 252/284 (88%)
 Frame = +1

Query: 34  MVGLSVGEKHFIEGGIAQDLRSDGRKRLTYRPISVETGVIPQASGSARVKLGATDVIASV 213
           MVGLS+GE HFI+GGIAQDLR DGRKRLTYRPISVETGVIPQ +GSARV++GATDVIASV
Sbjct: 1   MVGLSLGETHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQTNGSARVRMGATDVIASV 60

Query: 214 KAELGKPNYLYPDKGKVAIYVDCSPTAAPVFEGRGGEELSAELSAALQRCLLGGKSGAGA 393
           KAELGKP+ L PDKGKV+IYVDCS TA P FEGRGG+EL+AELS ALQRCLLGGKSGAGA
Sbjct: 61  KAELGKPSLLQPDKGKVSIYVDCSSTAEPAFEGRGGDELAAELSNALQRCLLGGKSGAGA 120

Query: 394 GINLSSLIVMEGKMCWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVAVGASAX 573
           GI+LSSLIV+EGK+CWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIP+V VA G S  
Sbjct: 121 GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGTSND 180

Query: 574 XXXXXXXXXXXFLQFDTSGVPVIVTLTKVGRHYIADATLEEESQMSSALSVSVDRHGHIC 753
                      FLQFDTS VPVIVTLTKVGRHYI DAT EEESQMSSA+S+SV+R GHIC
Sbjct: 181 EHPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRQGHIC 240

Query: 754 GLTKRGGAGLDPSVILDMISVAKHVSEQLIAQLDSKISAAEVDE 885
           G+TKRGG GLDPS+ILDMISVAKHVSEQLI +LDS+I++AE +E
Sbjct: 241 GITKRGGVGLDPSIILDMISVAKHVSEQLINKLDSEIASAEAEE 284


>ref|XP_002321194.1| predicted protein [Populus trichocarpa] gi|222861967|gb|EEE99509.1|
           predicted protein [Populus trichocarpa]
          Length = 287

 Score =  447 bits (1150), Expect = e-123
 Identities = 228/286 (79%), Positives = 252/286 (88%)
 Frame = +1

Query: 34  MVGLSVGEKHFIEGGIAQDLRSDGRKRLTYRPISVETGVIPQASGSARVKLGATDVIASV 213
           MVGLS+GEKHFI+GGI Q+LRSDGRKR  YRPIS+ETGVIPQA+GSAR+++GAT+VIASV
Sbjct: 1   MVGLSLGEKHFIQGGIDQNLRSDGRKRDAYRPISIETGVIPQANGSARIRIGATEVIASV 60

Query: 214 KAELGKPNYLYPDKGKVAIYVDCSPTAAPVFEGRGGEELSAELSAALQRCLLGGKSGAGA 393
           KAELG+PN L PDKGKVAI+VDCSP A P+FEGRGGEELSAELS ALQRCLLGGKSGAGA
Sbjct: 61  KAELGRPNALQPDKGKVAIFVDCSPVAEPMFEGRGGEELSAELSVALQRCLLGGKSGAGA 120

Query: 394 GINLSSLIVMEGKMCWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVAVGASAX 573
           GI+LSSLIV EGK+CWDLYIDGLV+SSDGNLLDALGAAIKAALSNTGIP+V VA GAS  
Sbjct: 121 GIDLSSLIVAEGKICWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPRVQVAAGASGD 180

Query: 574 XXXXXXXXXXXFLQFDTSGVPVIVTLTKVGRHYIADATLEEESQMSSALSVSVDRHGHIC 753
                      F+QFDTSGVPVIVTLTKVGRHYI DAT EEESQMSSA+SVS+ R G IC
Sbjct: 181 EQPEVDISDEEFMQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSVSISRKGQIC 240

Query: 754 GLTKRGGAGLDPSVILDMISVAKHVSEQLIAQLDSKISAAEVDEAE 891
           GL+KRG AGLDPSVI DMISVA+H+SEQLI +LDS+ISAAE DE E
Sbjct: 241 GLSKRGSAGLDPSVISDMISVARHISEQLINKLDSEISAAEADEDE 286


>ref|XP_003518190.1| PREDICTED: exosome complex component RRP42-like [Glycine max]
          Length = 286

 Score =  444 bits (1143), Expect = e-122
 Identities = 226/284 (79%), Positives = 249/284 (87%)
 Frame = +1

Query: 34  MVGLSVGEKHFIEGGIAQDLRSDGRKRLTYRPISVETGVIPQASGSARVKLGATDVIASV 213
           MVGLS+GE HFI+GGIAQDLR DGRKRLTYRPISVETGVIPQ +GSARV++GATDVIASV
Sbjct: 1   MVGLSLGETHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQTNGSARVRMGATDVIASV 60

Query: 214 KAELGKPNYLYPDKGKVAIYVDCSPTAAPVFEGRGGEELSAELSAALQRCLLGGKSGAGA 393
           KAELGKP+ L PDKGKV+IY+DCS TA P FEGRGG+EL+AELS ALQ CLLGGKSG GA
Sbjct: 61  KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDELAAELSNALQHCLLGGKSGEGA 120

Query: 394 GINLSSLIVMEGKMCWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVAVGASAX 573
           GI+LSSLIV+EGK+CWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIP+V VA G S  
Sbjct: 121 GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVEVAAGTSND 180

Query: 574 XXXXXXXXXXXFLQFDTSGVPVIVTLTKVGRHYIADATLEEESQMSSALSVSVDRHGHIC 753
                      FLQFDTS VPVIVTLTKVGRHYI DAT EEESQMSS +S+SV+R GHIC
Sbjct: 181 EHPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIVDATSEEESQMSSGVSISVNRQGHIC 240

Query: 754 GLTKRGGAGLDPSVILDMISVAKHVSEQLIAQLDSKISAAEVDE 885
           G+TKRGG GLDPS+ILDMISVAKHVSEQLI +LDS+I++AE DE
Sbjct: 241 GITKRGGVGLDPSIILDMISVAKHVSEQLINKLDSEIASAEADE 284


>gb|ACG32102.1| exosome complex exonuclease RRP42 [Zea mays]
           gi|413935080|gb|AFW69631.1| exosome complex exonuclease
           RRP42 isoform 1 [Zea mays] gi|413935081|gb|AFW69632.1|
           exosome complex exonuclease RRP42 isoform 2 [Zea mays]
           gi|413935082|gb|AFW69633.1| exosome complex exonuclease
           RRP42 isoform 3 [Zea mays] gi|413935083|gb|AFW69634.1|
           exosome complex exonuclease RRP42 isoform 4 [Zea mays]
          Length = 287

 Score =  441 bits (1133), Expect = e-121
 Identities = 223/284 (78%), Positives = 252/284 (88%)
 Frame = +1

Query: 34  MVGLSVGEKHFIEGGIAQDLRSDGRKRLTYRPISVETGVIPQASGSARVKLGATDVIASV 213
           MVGLS GEKHFI GGIAQDLR+DGR+RL +R +SV+TGVIPQA+GSARV+LGATD+IASV
Sbjct: 1   MVGLSEGEKHFIRGGIAQDLRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATDIIASV 60

Query: 214 KAELGKPNYLYPDKGKVAIYVDCSPTAAPVFEGRGGEELSAELSAALQRCLLGGKSGAGA 393
           KAELGKP+ L+PDKGKVAI+VDCSPTA P+FEGRG EELSAELS +LQRCLLGGKSGAGA
Sbjct: 61  KAELGKPSILHPDKGKVAIFVDCSPTAEPLFEGRGSEELSAELSVSLQRCLLGGKSGAGA 120

Query: 394 GINLSSLIVMEGKMCWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVAVGASAX 573
            I+LSSLIV++GK+CWDLYIDGLVVSSDGNLLDAL  AIK ALS+TGIPKVNV+V A++ 
Sbjct: 121 AIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASD 180

Query: 574 XXXXXXXXXXXFLQFDTSGVPVIVTLTKVGRHYIADATLEEESQMSSALSVSVDRHGHIC 753
                      FLQFDTSGVPVI+TLTKVGRHYI DAT EEESQMSSA+SVSV+RHG IC
Sbjct: 181 EEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQIC 240

Query: 754 GLTKRGGAGLDPSVILDMISVAKHVSEQLIAQLDSKISAAEVDE 885
           GLTKRGGAGLDPSVI DMISVAKHVS+Q I+ LDS+I+AAE +E
Sbjct: 241 GLTKRGGAGLDPSVIFDMISVAKHVSQQFISLLDSEIAAAEAEE 284