BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00002352
         (2009 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   592   e-167
ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2...   585   e-164
emb|CBI26421.3| unnamed protein product [Vitis vinifera]              580   e-163
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   577   e-162
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      564   e-158

>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  592 bits (1527), Expect = e-167
 Identities = 333/504 (66%), Positives = 381/504 (75%), Gaps = 12/504 (2%)
 Frame = +1

Query: 193  MATAAVIGVSAGKRXXXXXXXXXXXXXXXXXHSSHDHRLIQQHQTPSAKNLITAKKSTHF 372
            MATAAVIG+SAGKR                  + H    +  +Q  S K LI AKKS+++
Sbjct: 1    MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHG---LTHYQITSTKTLIVAKKSSNY 57

Query: 373  GIGAPPRSNVSESDRHTQPPIKALKEHINTSSAATVNASLPKXXXXXXXXXXXXXXXXXI 552
            G   P       S+R+TQ  IKALKEH++T+SA +  A+  K                 +
Sbjct: 58   GPSFP------SSNRNTQS-IKALKEHVDTASAPSTAATQFKTFNDMEEESSD------L 104

Query: 553  ESSLEALLLLQKSMLEKQWNLSCQ-------PKQGKCNKVEVIGSGISARQRRS--MRKY 705
            + S+EALLLLQKSMLEKQWNLS +       P +    K+ V  SG+SARQRR    RK 
Sbjct: 105  DYSVEALLLLQKSMLEKQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKN 164

Query: 706  VDPNSTTITR---KHIGSIVSPDLLGNHRLRSYVKGVISEELLTHAQVVHLSKKIKAGLS 876
            +  +  T+     K + S VSP+LL N RL+ YVKGV+SEELL+HA+VV LS+ IKAGLS
Sbjct: 165  LSQSKFTVQANVFKQLKSAVSPELLQN-RLKGYVKGVVSEELLSHAEVVRLSRIIKAGLS 223

Query: 877  LEDYKSKLKKRLGNDPSDEQLATSLRISPAELQSKRIECSLARERLAMSNVRLVMSIAQK 1056
            LED+KS+LK+RLG DPSDEQ+ATSL+IS AELQSK I CSLARE+LAMSNVRLVMSIAQ+
Sbjct: 224  LEDHKSRLKERLGCDPSDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQR 283

Query: 1057 YDNMGAEMADLVQGGLIGLVRGIEKYDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 1236
            YDNMGAEMADLVQGGLIGL+RGIEK+DSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLP
Sbjct: 284  YDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLP 343

Query: 1237 THLHERLSLIRNAKIRLEENGITPSIERIAEYLNMSQKKVRNATEATSKVFSLDREAFPS 1416
             HLHERL LIRNAKIRLEE G+TPSI+RIAE LN+SQKKVRNATEA SKVFSLDREAFPS
Sbjct: 344  NHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPS 403

Query: 1417 LNGLPGETLHSYIADNRPENNPWHGVDEWTLKDEVNNLIKTTLGEREQDIVRLYYGLDKE 1596
            LNGLPGET HSYIADN  ENNPWHGVD+W LKDEVN LI  TL EREQ+I+RLYYGLD E
Sbjct: 404  LNGLPGETHHSYIADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNE 463

Query: 1597 CFTWEDISRRIGLSRERVRQVGLV 1668
              TWEDIS+RIGLSRERVRQVGLV
Sbjct: 464  SLTWEDISKRIGLSRERVRQVGLV 487


>ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1|
            predicted protein [Populus trichocarpa]
          Length = 509

 Score =  585 bits (1508), Expect = e-164
 Identities = 322/505 (63%), Positives = 380/505 (75%), Gaps = 12/505 (2%)
 Frame = +1

Query: 190  MMATAAVIGVSAGKRXXXXXXXXXXXXXXXXXHSSHDHRLIQQHQTPSAKNLITAKKSTH 369
            MMATAAVIG+S+GKR                  + H    I  + T + KN+I AKKS++
Sbjct: 1    MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHG---ITYYPTATTKNVIVAKKSSN 57

Query: 370  FGIGAPPRSNVSESDRHTQPPIKALKEHINTSSAATVNASLPKXXXXXXXXXXXXXXXXX 549
            +G   P  +  S S       IKALKEH++T+SA++  A+  K                 
Sbjct: 58   YGPSFPSSNRNSHS-------IKALKEHVDTASASSNVATWFKTFDDFEEESSA------ 104

Query: 550  IESSLEALLLLQKSMLEKQWNLSCQPKQGKCN-------KVEVIGSGISARQRRSMRKYV 708
            ++ S+EALLLLQKSMLEKQWNLS +      +       K+ V  SG+SARQRR   +  
Sbjct: 105  LDYSVEALLLLQKSMLEKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRK 164

Query: 709  DPNSTTITR-----KHIGSIVSPDLLGNHRLRSYVKGVISEELLTHAQVVHLSKKIKAGL 873
            + N +         K + S+ SPDLL N RL+ YVKGV+S+E+L H +VV LS+ I+AGL
Sbjct: 165  NQNQSKFMSQSSDFKFLRSVSSPDLLQN-RLKGYVKGVVSDEVLPHTEVVRLSRIIRAGL 223

Query: 874  SLEDYKSKLKKRLGNDPSDEQLATSLRISPAELQSKRIECSLARERLAMSNVRLVMSIAQ 1053
            S ED+KS+LK+RLG +PSDEQ+A SLRIS A+LQSK I+CSLARE+LAMSNVRLVMSIAQ
Sbjct: 224  SFEDHKSRLKERLGCEPSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQ 283

Query: 1054 KYDNMGAEMADLVQGGLIGLVRGIEKYDSSKGFKISTYVYWWIRQGVSRALVENSRTLRL 1233
            KYDNMGAEMADLVQGGLIGL+RGIEK+DSSKGFKISTYVYWWIRQGVSRALV+NSRTLRL
Sbjct: 284  KYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRL 343

Query: 1234 PTHLHERLSLIRNAKIRLEENGITPSIERIAEYLNMSQKKVRNATEATSKVFSLDREAFP 1413
            P HLHERL LIRNAKIRLEE G+TPSI+RIAE LNMSQ+KVRNATEA SKVFSLDREAFP
Sbjct: 344  PNHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFP 403

Query: 1414 SLNGLPGETLHSYIADNRPENNPWHGVDEWTLKDEVNNLIKTTLGEREQDIVRLYYGLDK 1593
            SLNGLPGET HSYIADNRPENNPWHGVDEW LK+EVN LI +TL ERE++I+RLY+GLD+
Sbjct: 404  SLNGLPGETHHSYIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQ 463

Query: 1594 ECFTWEDISRRIGLSRERVRQVGLV 1668
            EC TWEDIS+R+GLSRERVRQVGLV
Sbjct: 464  ECLTWEDISKRMGLSRERVRQVGLV 488


>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  580 bits (1495), Expect = e-163
 Identities = 327/497 (65%), Positives = 372/497 (74%), Gaps = 4/497 (0%)
 Frame = +1

Query: 190  MMATAAVIGVSAGKRXXXXXXXXXXXXXXXXXHSSHDHRL-IQQHQTPSAKNLITAKKST 366
            MM TAAVIG+SAG R                  SS+ + +    H +P  KNLI+AKK  
Sbjct: 72   MMGTAAVIGLSAGNRLLASSHHYSDVAEKL---SSYVNDVGFPHHPSPPPKNLISAKKP- 127

Query: 367  HFGIGAPPRSNVSESDRHTQPPIKALKEHINTSSA-ATVNASLPKXXXXXXXXXXXXXXX 543
                     SN + S   +   +KALKEH+ ++SA +T +  L                 
Sbjct: 128  ---------SNYTPSSNRSIQSMKALKEHVESASAPSTADPDLSSSSSEVEDE------- 171

Query: 544  XXIESSLEALLLLQKSMLEKQWNLSCQPKQGKCNKVEVIGSGISARQRR--SMRKYVDPN 717
               E  +EA LLLQKSMLEKQWNLS + +Q    + EV  SG SARQRR    ++ ++  
Sbjct: 172  ---EYLVEAFLLLQKSMLEKQWNLSFKARQ---KRREVTCSGTSARQRRISGRKRVMNEK 225

Query: 718  STTITRKHIGSIVSPDLLGNHRLRSYVKGVISEELLTHAQVVHLSKKIKAGLSLEDYKSK 897
            S +  R  +G          +RL+ YVKGV+SEELLTHAQVV LS KIKAGL LED+KS+
Sbjct: 226  SKSRVRAALGV--------ENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSR 277

Query: 898  LKKRLGNDPSDEQLATSLRISPAELQSKRIECSLARERLAMSNVRLVMSIAQKYDNMGAE 1077
            LK+R+G++P+DEQ+A SLR+S AELQSK IECSLARE+LAMSNVRLVMSIAQ+YDNMGAE
Sbjct: 278  LKERIGSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAE 337

Query: 1078 MADLVQGGLIGLVRGIEKYDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL 1257
            MADLVQGGLIGL+RGIEK+DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP+HLHERL
Sbjct: 338  MADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERL 397

Query: 1258 SLIRNAKIRLEENGITPSIERIAEYLNMSQKKVRNATEATSKVFSLDREAFPSLNGLPGE 1437
            SLIRNAKIRLEE GITPSI+RIAE LNMSQKKVRNATEA SKVFSLDREAFPSLNGLPGE
Sbjct: 398  SLIRNAKIRLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGE 457

Query: 1438 TLHSYIADNRPENNPWHGVDEWTLKDEVNNLIKTTLGEREQDIVRLYYGLDKECFTWEDI 1617
            TLHSYIAD R ENNPWHGVDEW LKDEVN LI TTLGERE+DI+RLYYGLD EC TWEDI
Sbjct: 458  TLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDI 517

Query: 1618 SRRIGLSRERVRQVGLV 1668
            S+RIGLSRERVRQVGLV
Sbjct: 518  SKRIGLSRERVRQVGLV 534


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
            vinifera]
          Length = 497

 Score =  577 bits (1487), Expect = e-162
 Identities = 327/507 (64%), Positives = 373/507 (73%), Gaps = 14/507 (2%)
 Frame = +1

Query: 190  MMATAAVIGVSAGKRXXXXXXXXXXXXXXXXXHSSHDHRL-IQQHQTPSAKNLITAKKST 366
            MM TAAVIG+SAG R                  SS+ + +    H +P  KNLI+AKK  
Sbjct: 1    MMGTAAVIGLSAGNRLLASSHHYSDVAEKL---SSYVNDVGFPHHPSPPPKNLISAKKP- 56

Query: 367  HFGIGAPPRSNVSESDRHTQPPIKALKEHINTSSA-ATVNASLPKXXXXXXXXXXXXXXX 543
                     SN + S   +   +KALKEH+ ++SA +T +  L                 
Sbjct: 57   ---------SNYTPSSNRSIQSMKALKEHVESASAPSTADPDLSSSSSEVEDE------- 100

Query: 544  XXIESSLEALLLLQKSMLEKQWNLSCQP----------KQGKCNKVEVIGSGISARQRR- 690
               E  +EA LLLQKSMLEKQWNLS +           K+ +  + EV  SG SARQRR 
Sbjct: 101  ---EYLVEAFLLLQKSMLEKQWNLSFEEEEEEEEEDMGKKARQKRREVTCSGTSARQRRI 157

Query: 691  -SMRKYVDPNSTTITRKHIGSIVSPDLLGNHRLRSYVKGVISEELLTHAQVVHLSKKIKA 867
               ++ ++  S +  R  +G          +RL+ YVKGV+SEELLTHAQVV LS KIKA
Sbjct: 158  SGRKRVMNEKSKSRVRAALGV--------ENRLKGYVKGVVSEELLTHAQVVLLSNKIKA 209

Query: 868  GLSLEDYKSKLKKRLGNDPSDEQLATSLRISPAELQSKRIECSLARERLAMSNVRLVMSI 1047
            GL LED+KS+LK+R+G++P+DEQ+A SLR+S AELQSK IECSLARE+LAMSNVRLVMSI
Sbjct: 210  GLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSI 269

Query: 1048 AQKYDNMGAEMADLVQGGLIGLVRGIEKYDSSKGFKISTYVYWWIRQGVSRALVENSRTL 1227
            AQ+YDNMGAEMADLVQGGLIGL+RGIEK+DSSKGFKISTYVYWWIRQGVSRALVENSRTL
Sbjct: 270  AQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTL 329

Query: 1228 RLPTHLHERLSLIRNAKIRLEENGITPSIERIAEYLNMSQKKVRNATEATSKVFSLDREA 1407
            RLP+HLHERLSLIRNAKIRLEE GITPSI+RIAE LNMSQKKVRNATEA SKVFSLDREA
Sbjct: 330  RLPSHLHERLSLIRNAKIRLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDREA 389

Query: 1408 FPSLNGLPGETLHSYIADNRPENNPWHGVDEWTLKDEVNNLIKTTLGEREQDIVRLYYGL 1587
            FPSLNGLPGETLHSYIAD R ENNPWHGVDEW LKDEVN LI TTLGERE+DI+RLYYGL
Sbjct: 390  FPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGL 449

Query: 1588 DKECFTWEDISRRIGLSRERVRQVGLV 1668
            D EC TWEDIS+RIGLSRERVRQVGLV
Sbjct: 450  DNECLTWEDISKRIGLSRERVRQVGLV 476


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  564 bits (1453), Expect = e-158
 Identities = 315/505 (62%), Positives = 370/505 (73%), Gaps = 12/505 (2%)
 Frame = +1

Query: 190  MMATAAVIGVSAGKRXXXXXXXXXXXXXXXXXHSSHDHRLIQQHQTPSAKNLITAKKSTH 369
            MM+TAAVIG+SAGKR                  S H    +  H  PS KN+ITAKKS+ 
Sbjct: 1    MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHS---LPCHHVPSIKNVITAKKSSD 57

Query: 370  FGIGAPPRSNVSESDRHTQPPIKALKEHINTSSAATVNASLPKXXXXXXXXXXXXXXXXX 549
            +       S    S R +Q   K+LKEH++      + A                     
Sbjct: 58   Y-------SPSCVSSRKSQSA-KSLKEHVD------ITADPSDVPSWFEMYEQLQNESDD 103

Query: 550  IESSLEALLLLQKSMLEKQWNLSCQPK-------QGKCNKVEVIGSGISARQRR--SMRK 702
             + S+E LLLLQKSMLEKQWNLS +         + K  K+ +  SG SAR+RR  S ++
Sbjct: 104  EDESVEVLLLLQKSMLEKQWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQR 163

Query: 703  YVDPNST---TITRKHIGSIVSPDLLGNHRLRSYVKGVISEELLTHAQVVHLSKKIKAGL 873
             +D +S+   T   K + SI+ P+LL N RL+ YVKGV+SEELLTHA+V+ LSKKI+ GL
Sbjct: 164  VLDRHSSATPTSAAKPLRSIIGPELLQN-RLKGYVKGVVSEELLTHAEVLQLSKKIQVGL 222

Query: 874  SLEDYKSKLKKRLGNDPSDEQLATSLRISPAELQSKRIECSLARERLAMSNVRLVMSIAQ 1053
             LE+ KS+LK+RLG +PSD+QLA SL++S  +LQS  IECSLARERLAMSNVRLVMSIAQ
Sbjct: 223  YLEEQKSRLKERLGCEPSDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQ 282

Query: 1054 KYDNMGAEMADLVQGGLIGLVRGIEKYDSSKGFKISTYVYWWIRQGVSRALVENSRTLRL 1233
            +YDN+GAEMADLVQGGLIGL+RGIEK+D SKG+KISTYVYWWIRQGVSRALVENSRTLRL
Sbjct: 283  RYDNVGAEMADLVQGGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRL 342

Query: 1234 PTHLHERLSLIRNAKIRLEENGITPSIERIAEYLNMSQKKVRNATEATSKVFSLDREAFP 1413
            PT+LHERLSLIRNAK RLEE GITPS+  IA  LNMSQKKVRNATEA+SK++SLDREAFP
Sbjct: 343  PTYLHERLSLIRNAKARLEEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFP 402

Query: 1414 SLNGLPGETLHSYIADNRPENNPWHGVDEWTLKDEVNNLIKTTLGEREQDIVRLYYGLDK 1593
            SLNGLPGETLHSYIADN  ENNPWHGVD W LKDEVNNLI +TL +RE++I+RLYYGLD 
Sbjct: 403  SLNGLPGETLHSYIADNHLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDN 462

Query: 1594 ECFTWEDISRRIGLSRERVRQVGLV 1668
            EC TWEDIS+RIGLSRERVRQVGLV
Sbjct: 463  ECLTWEDISKRIGLSRERVRQVGLV 487