BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00002350
         (5759 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74536.1| hypothetical protein VITISV_023111 [Vitis vinifera]   407   0.0  
emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]   377   e-155
gb|ABF99351.1| retrotransposon protein, putative, unclassified [...   262   e-154
gb|AAP44677.1| putative gag-pol polyprotein [Oryza sativa Japoni...   262   e-152
emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera]   378   e-151

>emb|CAN74536.1| hypothetical protein VITISV_023111 [Vitis vinifera]
          Length = 1278

 Score =  407 bits (1045), Expect(7) = 0.0
 Identities = 211/398 (53%), Positives = 266/398 (66%), Gaps = 3/398 (0%)
 Frame = -2

Query: 4165 DEKRKKLHAKGEKCVLLGITEHSKAYKLYNPITVKLIVSRDVVFDEESTWMWYVSTAAKN 3986
            +EKRKKL  KGEKCV L  +E SKAYKL+NP+T K++ SRDV+F EESTW W      + 
Sbjct: 608  NEKRKKLDDKGEKCVFLXXSEASKAYKLFNPLTKKIVTSRDVIFXEESTWNWNGQXPTQV 667

Query: 3985 IPVNLDDDTNVELLPP--PIEAEQHSQPGTPSSTIPSNVTMEIQQFXXXXXXXXXXXXPE 3812
            I  N  ++   +LL    P  +   S P   S+   ++ T                    
Sbjct: 668  IFDNDAEEERQQLLQQRIPTVSIPKSPPNDASTATETSST-------------------P 708

Query: 3811 APSDIPPVARPHHTKSLPAWMQDYEVTGVNQFD-ETIAHFALFADSDPATFQEAVQDPKW 3635
            A S++   +R    +  PAWMQD+EVTGV   + +TIAH+AL +D DP TFQEA++D KW
Sbjct: 709  AESNVVAESRLRRVRKRPAWMQDFEVTGVQSDNYDTIAHYALLSDCDPITFQEAIKDLKW 768

Query: 3634 QQDMADEISSIQKNNTWELTDLPKGHKSIGVKWVYKTKLNAQGGIAKYKFGLVIKGYKQQ 3455
             + M +EI SI+KNN+WEL +LPKG KSIGVKWVYKTKLN  GG+ KYK  LV KGYKQ+
Sbjct: 769  HKAMNEEIGSIEKNNSWELVELPKGQKSIGVKWVYKTKLNKDGGVDKYKAXLVAKGYKQE 828

Query: 3454 LGIGYTEVFAPVVRHDTIRLVLALEAQSLLPVFQFDVKSAFLHGELQEEVYVEQPPG*VH 3275
             G+ Y  VFAPV + DTI LVL++ AQ+   + Q DVKSAFLHG L+EEVY++QPPG V 
Sbjct: 829  FGVDYKXVFAPVAKLDTIXLVLSMAAQNSWSIHQLDVKSAFLHGXLEEEVYIDQPPGYVK 888

Query: 3274 LGNESKVYRLRKALYGLKQAPRAWYSRITTYFSNSGF*QCPYEPTLFLRSGSQGDILVVS 3095
             G E++VY+L+KALYGLKQAPRAWYSRI  YF   GF +CPYE TL+ + G    IL+V 
Sbjct: 889  QGYENQVYKLKKALYGLKQAPRAWYSRIDAYFIEEGFIKCPYEHTLYTKYGVDKKILIVC 948

Query: 3094 LYVDDLIYTGNNTSMIDAFKSSMMSEFDMTDLGMLELF 2981
            LYVDDLIYT NN +M+  FK SMM  FDMTD+G++  F
Sbjct: 949  LYVDDLIYTSNNKTMLADFKKSMMKXFDMTDMGLMHYF 986



 Score =  157 bits (396), Expect(7) = 0.0
 Identities = 72/114 (63%), Positives = 94/114 (82%)
 Frame = -3

Query: 2997 GCWNYFLSIEIVQSSAGIFVSQQKYTRDVLARFHMKDCNAVGTPVDLGLKLTKDPEGKKI 2818
            G  +YFL IE+VQSSAG+F+SQ+KY  ++L +F +KDCN+V TP ++GLKL+K    K++
Sbjct: 981  GLMHYFLGIEVVQSSAGVFISQKKYALEILDKFMLKDCNSVITPSEVGLKLSKSGAXKRV 1040

Query: 2817 DSTMYKQIIGSLMYLTATRPDIMYCVNLLSRYMDQPTELHLLVAKRILGYLHGT 2656
            DST+YKQI+GSLMYLT+TRPDIM+ VNL+ RYM+ PTE+HLL AKRI  YL GT
Sbjct: 1041 DSTLYKQIVGSLMYLTSTRPDIMHAVNLIXRYMENPTEVHLLAAKRIFXYLKGT 1094



 Score =  141 bits (356), Expect(7) = 0.0
 Identities = 77/156 (49%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
 Frame = -3

Query: 5235 DKSLFSELDDTFHTTVKLGDSSRLPVMGKGTISIQTSKQ-LQSITNVFYVPRLTNNLLSA 5059
            D    + +  +F +TV  GD S + VMGKG I+I+T    +++I+ VFYVP L +NLLSA
Sbjct: 313  DTGCSNHMCGSFRSTVSFGDCSTVNVMGKGDINIRTKNGFVETISYVFYVPDLKSNLLSA 372

Query: 5058 GQLQEDDYEILIRKGICHIRHPETGLVAEVVITSNWMFPLYLINDIFPCFAAMVNDEAWL 4879
            GQLQE  Y I I+KG C I  P  G +  V + SN +FPL  I+ +     A V D +WL
Sbjct: 373  GQLQEKGYIITIQKGACEIYDPSRGAIDVVQMASNRLFPLK-IDSVQSFLMAEVKDLSWL 431

Query: 4878 WHLRYGHLNFNGLRTLHQKGMVASLPKIDHLAQLCE 4771
            WHLRYGHLNF GL+TL QK MV  LP+I   +Q+CE
Sbjct: 432  WHLRYGHLNFGGLKTLQQKHMVTGLPQISIPSQVCE 467



 Score =  117 bits (293), Expect(7) = 0.0
 Identities = 73/177 (41%), Positives = 96/177 (54%), Gaps = 4/177 (2%)
 Frame = -2

Query: 5758 DITIIEKILR--TTKFDYLVCSLEESKDLDTLSIDELMSSLPVHEQMINQHDIVEQTLQL 5585
            D+T+IEKILR  T KF+Y+VCS+EESKDLD LSIDEL  SL VHEQ I Q D  EQ L+ 
Sbjct: 154  DVTVIEKILRSMTPKFNYVVCSIEESKDLDELSIDELQGSLLVHEQKIIQEDKEEQALKA 213

Query: 5584 SIQKSYTNXXXXXXXXXXXXRSEDXXXXXXXXXXGNYLREAKESKPFNKSNIRCYRCDRY 5405
            S   +               RS D          G        ++ F+KS +  +RC ++
Sbjct: 214  STNNN----------ALTMNRSADRGRGKGRGVRGVRDGGRGRNQQFDKSKVEXFRCHKF 263

Query: 5404 GQFRSACHAKLSNEQE--ENSNLVETEDEPTLLMICNTMNETCRTMWYSDTGASNHV 5240
              +RS C+ KL N++E  E SN  E ++  TLLM      +    +WY DTG SNH+
Sbjct: 264  XHYRSECYTKLPNDKEKGEKSNYAEKKEVETLLMAAQVNEQPQAEVWYVDTGCSNHM 320



 Score =  117 bits (292), Expect(7) = 0.0
 Identities = 53/80 (66%), Positives = 67/80 (83%)
 Frame = -3

Query: 4458 FCEVHDIRRKLTASYTPQQNGVAKRKSRTILNMVRSMLQTSRLPKSFWPEAVLWSIRLLN 4279
            FC+   IRR+LTA+YTPQQNGV++RK+RTILNMVRS+L   ++PKSFWP AV WSI +LN
Sbjct: 532  FCDDQGIRRELTAAYTPQQNGVSERKNRTILNMVRSLLXRGKIPKSFWPXAVNWSIHVLN 591

Query: 4278 RIPTIAVRNMTPLEAWNGRQ 4219
            R PT +V+NMTP EAWN ++
Sbjct: 592  RSPTFSVQNMTPEEAWNEKR 611



 Score = 57.4 bits (137), Expect(7) = 0.0
 Identities = 29/46 (63%), Positives = 33/46 (71%)
 Frame = -1

Query: 2666 YMVPQDDRKSTSGYVFMLGSGSVSWSSHKQPIVTLSTTEAGYVAAA 2529
            Y    DDRKSTS  VFML SG+++WSS  Q IVTLSTTE  +VA A
Sbjct: 1117 YAXDLDDRKSTSXAVFMLNSGAITWSSKXQQIVTLSTTEVEFVAXA 1162



 Score = 54.3 bits (129), Expect(7) = 0.0
 Identities = 36/104 (34%), Positives = 46/104 (44%)
 Frame = -1

Query: 4766 VVAKQHREPFPKGHAWRAKQAPKLVHSDICGPLNPKSSGNKRYFITFVDDFTRKTWVYIL 4587
            VV KQHR  FP+G + RAK                                         
Sbjct: 470  VVGKQHRSQFPQGKSRRAKN---------------------------------------- 489

Query: 4586 QEKSEALSASQAYKTLVENEISQPIKVLRSDRGGEYNSKDFLNF 4455
             EKSEA SA +++K  VE E  + IK+LR+DRGGEY S +F +F
Sbjct: 490  -EKSEAFSAFKSFKARVEKETGRSIKILRTDRGGEYCSNEFEHF 532


>emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]
          Length = 1283

 Score =  377 bits (968), Expect(3) = e-155
 Identities = 198/406 (48%), Positives = 260/406 (64%), Gaps = 3/406 (0%)
 Frame = -2

Query: 4207 SLSSFRLH-CICTC--PDEKRKKLHAKGEKCVLLGITEHSKAYKLYNPITVKLIVSRDVV 4037
            S++ FR+  CI     P +KRKKL  KGEKC+ LG++E SKAYKLYNPIT K+ +SRD++
Sbjct: 648  SVNHFRIFGCIAYAHIPXQKRKKLDDKGEKCIFLGVSEXSKAYKLYNPITKKIXISRDII 707

Query: 4036 FDEESTWMWYVSTAAKNIPVNLDDDTNVELLPPPIEAEQHSQPGTPSSTIPSNVTMEIQQ 3857
            FDE S W W  +T  + I  + D +   E        +Q  Q   P + IP         
Sbjct: 708  FDEGSFWKWDDNTTKQQIQABFDGENEEE-------RQQPLQQQIPXAEIP--------- 751

Query: 3856 FXXXXXXXXXXXXPEAPSDIPPVARPHHTKSLPAWMQDYEVTGVNQFDETIAHFALFADS 3677
                            P++ P  A    T                +FDE +    +  + 
Sbjct: 752  ----------------PNEAPTTAETSPTTP--------------EFDEQV-EAXVGXNC 780

Query: 3676 DPATFQEAVQDPKWQQDMADEISSIQKNNTWELTDLPKGHKSIGVKWVYKTKLNAQGGIA 3497
            DP TF+ AV++ KW++ M  EI++I++N+TWEL++LPKGHK+IGVKWVYKTKL   G + 
Sbjct: 781  DPTTFESAVKESKWRKAMDAEIAAIERNDTWELSELPKGHKTIGVKWVYKTKLKENGEVD 840

Query: 3496 KYKFGLVIKGYKQQLGIGYTEVFAPVVRHDTIRLVLALEAQSLLPVFQFDVKSAFLHGEL 3317
            KYK  LV KGYKQ+ G+ Y EVFAPV RHDTIRLV+AL AQ+  P+FQ DV SAFLHG L
Sbjct: 841  KYKARLVAKGYKQEFGVDYKEVFAPVARHDTIRLVIALAAQNSWPIFQLDVXSAFLHGNL 900

Query: 3316 QEEVYVEQPPG*VHLGNESKVYRLRKALYGLKQAPRAWYSRITTYFSNSGF*QCPYEPTL 3137
            +E+V+V+QPPG + + NE KVYRL+KALYGLKQAPRAWYSRI  YF   GF +CPYE TL
Sbjct: 901  EEQVFVDQPPGYIKVKNEHKVYRLKKALYGLKQAPRAWYSRIEAYFLKEGFQKCPYEHTL 960

Query: 3136 FLRSGSQGDILVVSLYVDDLIYTGNNTSMIDAFKSSMMSEFDMTDL 2999
            F++  + G +L+V LYVDD+I+TGN++ M + FK SMM EF+M+DL
Sbjct: 961  FVKVSNGGKMLIVCLYVDDIIFTGNDSVMFERFKKSMMVEFEMSDL 1006



 Score =  148 bits (373), Expect(3) = e-155
 Identities = 69/104 (66%), Positives = 82/104 (78%)
 Frame = -3

Query: 2967 IVQSSAGIFVSQQKYTRDVLARFHMKDCNAVGTPVDLGLKLTKDPEGKKIDSTMYKQIIG 2788
            +VQS  GIF+SQ+KY R++L RF MKDCN V TP   GLKL KD  GKK+D  +YKQI+G
Sbjct: 1007 VVQSDTGIFISQKKYVREILNRFQMKDCNPVSTPTQFGLKLNKDHGGKKVDXIIYKQIVG 1066

Query: 2787 SLMYLTATRPDIMYCVNLLSRYMDQPTELHLLVAKRILGYLHGT 2656
            SLMYLTATRPDIM+ V+L+SRYM+ PTELH L AK+I  YL GT
Sbjct: 1067 SLMYLTATRPDIMHSVSLISRYMENPTELHFLAAKKICRYLQGT 1110



 Score = 75.1 bits (183), Expect(3) = e-155
 Identities = 36/48 (75%), Positives = 41/48 (85%)
 Frame = -1

Query: 2666 YMVPQDDRKSTSGYVFMLGSGSVSWSSHKQPIVTLSTTEAGYVAAAFC 2523
            Y   QD+R+STSGYVFMLG+G+VSWSS KQPIVTLSTTEA +VAA  C
Sbjct: 1133 YAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTTEAEFVAATAC 1180



 Score =  173 bits (439), Expect(4) = e-147
 Identities = 85/156 (54%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
 Frame = -3

Query: 5235 DKSLFSELDDTFHTTVKLGDSSRLPVMGKGTISIQTS-KQLQSITNVFYVPRLTNNLLSA 5059
            DKS FS+LD+TF  +V  GD+S++ VMGKG++ I +  K  Q I+NVF+VP L  NLLS 
Sbjct: 306  DKSAFSDLDETFRXSVTFGDNSKVSVMGKGSVXIHSKEKSDQIISNVFFVPDLKTNLLSV 365

Query: 5058 GQLQEDDYEILIRKGICHIRHPETGLVAEVVITSNWMFPLYLINDIFPCFAAMVNDEAWL 4879
             QLQE  YEI I+ G+C I+  + GL+A+V +T+N MFPLYL N    CF+  + DE WL
Sbjct: 366  XQLQEKGYEIFIKDGVCRIQDEKLGLIAQVNMTTNRMFPLYLDNTTQNCFSTKLMDEGWL 425

Query: 4878 WHLRYGHLNFNGLRTLHQKGMVASLPKIDHLAQLCE 4771
            WH RYGHLNF GL+TL QK MV  LP I   +Q+CE
Sbjct: 426  WHFRYGHLNFGGLKTLQQKNMVTGLPPIXTPSQICE 461



 Score =  151 bits (381), Expect(4) = e-147
 Identities = 68/127 (53%), Positives = 91/127 (71%)
 Frame = -3

Query: 4473 QGLPQFCEVHDIRRKLTASYTPQQNGVAKRKSRTILNMVRSMLQTSRLPKSFWPEAVLWS 4294
            Q    FCE H I+++LTA+Y+PQQNG + RK+RTILNMVR++L    +P+SFWPEAV+WS
Sbjct: 562  QEFVNFCENHGIQKQLTAAYSPQQNGXSXRKNRTILNMVRTILSKGHIPRSFWPEAVIWS 621

Query: 4293 IRLLNRIPTIAVRNMTPLEAWNGRQPSAVHCRVFGCIAYAHVQMKRERSFMLKARNVSCL 4114
            I +LNR PT+ V+N+TP EAWNGR+PS  H R+FGCIAYAH+  ++ +    K      L
Sbjct: 622  IHILNRSPTLVVQNVTPXEAWNGRKPSVNHFRIFGCIAYAHIPXQKRKKLDDKGEKCIFL 681

Query: 4113 GLLNTPK 4093
            G+    K
Sbjct: 682  GVSEXSK 688



 Score =  145 bits (367), Expect(4) = e-147
 Identities = 65/104 (62%), Positives = 81/104 (77%)
 Frame = -1

Query: 4766 VVAKQHREPFPKGHAWRAKQAPKLVHSDICGPLNPKSSGNKRYFITFVDDFTRKTWVYIL 4587
            VV KQHR  FPKG +WR  +  +LVHSDICGP+NP S+G KRYFITF+ D++ KTWVY L
Sbjct: 464  VVGKQHRYQFPKGKSWRXNKVLELVHSDICGPINPTSNGGKRYFITFIXDYSXKTWVYFL 523

Query: 4586 QEKSEALSASQAYKTLVENEISQPIKVLRSDRGGEYNSKDFLNF 4455
            QEKSEA S  +++K LVE E  +PIK+ RSD GGEY S++F+NF
Sbjct: 524  QEKSEAFSTFKSFKMLVEKEAXKPIKIFRSDXGGEYTSQEFVNF 567



 Score =  124 bits (311), Expect(4) = e-147
 Identities = 72/187 (38%), Positives = 97/187 (51%), Gaps = 14/187 (7%)
 Frame = -2

Query: 5758 DITIIEKILR--TTKFDYLVCSLEESKDLDTLSIDELMSSLPVHEQMINQHDIVEQTLQL 5585
            D+TI+EKILR  T  F+++VCS+EES D+D LSIDEL SSL VHE+  NQ +  EQ L+ 
Sbjct: 118  DVTIVEKILRSMTPXFNFVVCSIEESHDIDELSIDELQSSLLVHERKFNQQEKEEQALKA 177

Query: 5584 SIQ------------KSYTNXXXXXXXXXXXXRSEDXXXXXXXXXXGNYLREAKESKPFN 5441
            S +            +S                             GNY    K S   +
Sbjct: 178  STENHLATRGDRXRGRSRGRGRGNYDRGNQHQHQRQDNRFQGRGQGGNYSTTYK-SXSTD 236

Query: 5440 KSNIRCYRCDRYGQFRSACHAKLSNEQEENSNLVETEDEPTLLMICNTMNETCRTMWYSD 5261
            KSN+ CYRC RYG ++  C   ++ + EE +N  E E+E +LLM C+    T   +WY D
Sbjct: 237  KSNVECYRCHRYGHYKXECRTNMNKQGEERTNFAEKEEEVSLLMACHANQXTHPNLWYID 296

Query: 5260 TGASNHV 5240
            TG SNH+
Sbjct: 297  TGCSNHM 303


>gb|ABF99351.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1190

 Score =  262 bits (670), Expect(6) = e-154
 Identities = 151/402 (37%), Positives = 228/402 (56%), Gaps = 15/402 (3%)
 Frame = -2

Query: 4150 KLHAKGEKCVLLGITEHSKAYKLYNPITVKLIVSRDVVFDEESTWMWYVSTAAKNIPVNL 3971
            KL  +    V +G    +K YK+++P+T ++ VSRDV+FDE ++W W    A   +    
Sbjct: 538  KLEDRSTPMVFIGYAAGTKGYKVFDPVTGRVQVSRDVIFDEGASWDWGAEAAESGLE--- 594

Query: 3970 DDDTNVELLPPPIEAE---QHSQPGTPSSTIPSNVTMEIQQFXXXXXXXXXXXXPEAPSD 3800
              + ++E +   +         +  +PSS   ++ T E  +               +P  
Sbjct: 595  QTEFSIEYVLTQVSGGGRGAQEENSSPSSRRAASTTPEEPRTPSPSLGPRASLHGTSPVF 654

Query: 3799 IPPVAR------------PHHTKSLPAWMQDYEVTGVNQFDETIAHFALFADSDPATFQE 3656
            I P +R            P   + L   + D    G+ +         L    +PA+F E
Sbjct: 655  ISPPSRGDEHLDADHDDCPPRYRPLGDLLGDAAAPGLAERALAPEQLYLQEAEEPASFNE 714

Query: 3655 AVQDPKWQQDMADEISSIQKNNTWELTDLPKGHKSIGVKWVYKTKLNAQGGIAKYKFGLV 3476
            A Q  +W+  M +EI++I++N TW L DLP+GH +IG+KWV+K K +A+G + K+K  LV
Sbjct: 715  AEQHQRWRSTMLEEIATIEENKTWRLVDLPRGHHAIGLKWVFKVKKDARGEVTKFKARLV 774

Query: 3475 IKGYKQQLGIGYTEVFAPVVRHDTIRLVLALEAQSLLPVFQFDVKSAFLHGELQEEVYVE 3296
             KGY QQ G+ + EVFAP+ R +++R++LAL AQ+   V   DVKSAFL+GEL EEVYV 
Sbjct: 775  AKGYVQQPGVDFNEVFAPMARLESVRMLLALAAQAGWFVHHMDVKSAFLNGELTEEVYVV 834

Query: 3295 QPPG*VHLGNESKVYRLRKALYGLKQAPRAWYSRITTYFSNSGF*QCPYEPTLFLRSGSQ 3116
            QPPG V  G+E +V +L KALYGL+QAPR W +++ T  ++ GF +C +E  ++ + G  
Sbjct: 835  QPPGFVVEGHEHQVLKLDKALYGLRQAPRVWNAKLDTSLTSLGFRRCDFEHAVYAQ-GQG 893

Query: 3115 GDILVVSLYVDDLIYTGNNTSMIDAFKSSMMSEFDMTDLGML 2990
               L+V +YVDDLI TG++   ID FK+ MMS F M+DLG+L
Sbjct: 894  THHLLVGVYVDDLIITGSDAVEIDRFKAEMMSLFRMSDLGLL 935



 Score =  107 bits (267), Expect(6) = e-154
 Identities = 49/115 (42%), Positives = 75/115 (65%)
 Frame = -3

Query: 5115 QSITNVFYVPRLTNNLLSAGQLQEDDYEILIRKGICHIRHPETGLVAEVVITSNWMFPLY 4936
            +++T V+++P+L  NL+S GQL E   ++ I  G+C IR P   L+A+V   +N ++ L 
Sbjct: 228  RALTEVYFIPKLNANLISLGQLDEHGCDVRIYHGVCTIRDPAKKLLAKVRCNANRLYLLK 287

Query: 4935 LINDIFPCFAAMVNDEAWLWHLRYGHLNFNGLRTLHQKGMVASLPKIDHLAQLCE 4771
            L+     C +A  +D AWLWH R+GHL+F+ LR L  K MV  LP+I+H+ QLC+
Sbjct: 288  LMTGHPVCLSACTSDTAWLWHARFGHLHFDALRKLADKDMVRGLPRIEHVEQLCD 342



 Score = 97.1 bits (240), Expect(6) = e-154
 Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 5/105 (4%)
 Frame = -3

Query: 4446 HDIRRKLTASYTPQQNGVAKRKSRTILNMVRSMLQTSRLPKSFWPEAVLWSIRLLNRIPT 4267
            H + R  +A Y+PQQNGV +R+++TIL    S+L+   +P  FW EAV  ++ LLNR PT
Sbjct: 439  HGVGRHFSAPYSPQQNGVVERRNQTILATACSLLKAKGMPARFWGEAVTMAVFLLNRAPT 498

Query: 4266 IAVRNMTPLEAWNGRQPSAVHCRVFGCIAYA-----HVQMKRERS 4147
             ++ N TP EAW G++P+  H R FGC+AY      H+    +RS
Sbjct: 499  KSLENRTPYEAWFGKKPAVGHLRTFGCLAYVKNMRPHLSKLEDRS 543



 Score = 93.2 bits (230), Expect(6) = e-154
 Identities = 46/110 (41%), Positives = 68/110 (61%)
 Frame = -3

Query: 2985 YFLSIEIVQSSAGIFVSQQKYTRDVLARFHMKDCNAVGTPVDLGLKLTKDPEGKKIDSTM 2806
            ++L IE+ Q +    ++Q  + R +L +  M+DCNA  TP++  LKL+K  +   +DST 
Sbjct: 937  FYLGIEVKQVAGSTRLTQSAFARRILEKAGMQDCNACVTPMEQRLKLSKHSDAPLVDSTG 996

Query: 2805 YKQIIGSLMYLTATRPDIMYCVNLLSRYMDQPTELHLLVAKRILGYLHGT 2656
            Y+ I+GSL YL  TR DI + V  +SR+M+ PT  H    KRIL Y+ GT
Sbjct: 997  YRSIVGSLRYLVHTRLDIAFAVGYVSRFMEAPTAEHEAAVKRILRYIAGT 1046



 Score = 77.0 bits (188), Expect(6) = e-154
 Identities = 34/101 (33%), Positives = 54/101 (53%)
 Frame = -1

Query: 4766 VVAKQHREPFPKGHAWRAKQAPKLVHSDICGPLNPKSSGNKRYFITFVDDFTRKTWVYIL 4587
            +++K  R PFP    +RA     LVH D+CGP++P + G K YF+  VDD +R  W+ +L
Sbjct: 345  IISKHRRSPFPTRAVYRATDRLDLVHGDLCGPISPATPGGKSYFLLLVDDHSRYMWLVLL 404

Query: 4586 QEKSEALSASQAYKTLVENEISQPIKVLRSDRGGEYNSKDF 4464
              K +A+ A   ++   E E  + ++  R D G     + F
Sbjct: 405  ARKGDAVKAIMHFQASAEAESDRKLRKFRIDNGNHGVGRHF 445



 Score = 23.9 bits (50), Expect(6) = e-154
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 2651 DDRKSTSGYVFMLGSGSVS 2595
            D RK TSG +F LGS  ++
Sbjct: 1075 DTRKRTSGVMFFLGSSPMA 1093


>gb|AAP44677.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1182

 Score =  262 bits (670), Expect(6) = e-152
 Identities = 151/402 (37%), Positives = 228/402 (56%), Gaps = 15/402 (3%)
 Frame = -2

Query: 4150 KLHAKGEKCVLLGITEHSKAYKLYNPITVKLIVSRDVVFDEESTWMWYVSTAAKNIPVNL 3971
            KL  +    V +G    +K YK+++P+T ++ VSRDV+FDE ++W W    A   +    
Sbjct: 530  KLEDRSTPMVFIGYAAGTKGYKVFDPVTGRVQVSRDVIFDEGASWDWGAEAAESGLE--- 586

Query: 3970 DDDTNVELLPPPIEAE---QHSQPGTPSSTIPSNVTMEIQQFXXXXXXXXXXXXPEAPSD 3800
              + ++E +   +         +  +PSS   ++ T E  +               +P  
Sbjct: 587  QTEFSIEYVLTQVSGGGRGAQEENSSPSSRRAASTTPEEPRTPSPSLGPRASLHGTSPVF 646

Query: 3799 IPPVAR------------PHHTKSLPAWMQDYEVTGVNQFDETIAHFALFADSDPATFQE 3656
            I P +R            P   + L   + D    G+ +         L    +PA+F E
Sbjct: 647  ISPPSRGDEHLDADHDDCPPRYRPLGDLLGDAAAPGLAERALAPEQLYLQEAEEPASFNE 706

Query: 3655 AVQDPKWQQDMADEISSIQKNNTWELTDLPKGHKSIGVKWVYKTKLNAQGGIAKYKFGLV 3476
            A Q  +W+  M +EI++I++N TW L DLP+GH +IG+KWV+K K +A+G + K+K  LV
Sbjct: 707  AEQHQRWRSTMLEEIATIEENKTWRLVDLPRGHHAIGLKWVFKVKKDARGEVTKFKARLV 766

Query: 3475 IKGYKQQLGIGYTEVFAPVVRHDTIRLVLALEAQSLLPVFQFDVKSAFLHGELQEEVYVE 3296
             KGY QQ G+ + EVFAP+ R +++R++LAL AQ+   V   DVKSAFL+GEL EEVYV 
Sbjct: 767  AKGYVQQPGVDFNEVFAPMARLESVRMLLALAAQAGWFVHHMDVKSAFLNGELTEEVYVV 826

Query: 3295 QPPG*VHLGNESKVYRLRKALYGLKQAPRAWYSRITTYFSNSGF*QCPYEPTLFLRSGSQ 3116
            QPPG V  G+E +V +L KALYGL+QAPR W +++ T  ++ GF +C +E  ++ + G  
Sbjct: 827  QPPGFVVEGHEHQVLKLDKALYGLRQAPRVWNAKLDTSLTSLGFRRCDFEHAVYAQ-GQG 885

Query: 3115 GDILVVSLYVDDLIYTGNNTSMIDAFKSSMMSEFDMTDLGML 2990
               L+V +YVDDLI TG++   ID FK+ MMS F M+DLG+L
Sbjct: 886  THHLLVGVYVDDLIITGSDAVEIDRFKAEMMSLFRMSDLGLL 927



 Score =  107 bits (267), Expect(6) = e-152
 Identities = 49/115 (42%), Positives = 75/115 (65%)
 Frame = -3

Query: 5115 QSITNVFYVPRLTNNLLSAGQLQEDDYEILIRKGICHIRHPETGLVAEVVITSNWMFPLY 4936
            +++T V+++P+L  NL+S GQL E   ++ I  G+C IR P   L+A+V   +N ++ L 
Sbjct: 228  RALTEVYFIPKLNANLISLGQLDEHGCDVRIYHGVCTIRDPAKKLLAKVRCNANRLYLLK 287

Query: 4935 LINDIFPCFAAMVNDEAWLWHLRYGHLNFNGLRTLHQKGMVASLPKIDHLAQLCE 4771
            L+     C +A  +D AWLWH R+GHL+F+ LR L  K MV  LP+I+H+ QLC+
Sbjct: 288  LMTGHPVCLSACTSDTAWLWHARFGHLHFDALRKLADKDMVRGLPRIEHVEQLCD 342



 Score = 97.1 bits (240), Expect(6) = e-152
 Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 5/105 (4%)
 Frame = -3

Query: 4446 HDIRRKLTASYTPQQNGVAKRKSRTILNMVRSMLQTSRLPKSFWPEAVLWSIRLLNRIPT 4267
            H + R  +A Y+PQQNGV +R+++TIL    S+L+   +P  FW EAV  ++ LLNR PT
Sbjct: 431  HGVGRHFSAPYSPQQNGVVERRNQTILATACSLLKAKGMPARFWGEAVTMAVFLLNRAPT 490

Query: 4266 IAVRNMTPLEAWNGRQPSAVHCRVFGCIAYA-----HVQMKRERS 4147
             ++ N TP EAW G++P+  H R FGC+AY      H+    +RS
Sbjct: 491  KSLENRTPYEAWFGKKPAVGHLRTFGCLAYVKNMRPHLSKLEDRS 535



 Score = 93.2 bits (230), Expect(6) = e-152
 Identities = 46/110 (41%), Positives = 68/110 (61%)
 Frame = -3

Query: 2985 YFLSIEIVQSSAGIFVSQQKYTRDVLARFHMKDCNAVGTPVDLGLKLTKDPEGKKIDSTM 2806
            ++L IE+ Q +    ++Q  + R +L +  M+DCNA  TP++  LKL+K  +   +DST 
Sbjct: 929  FYLGIEVKQVAGSTRLTQSAFARRILEKAGMQDCNACVTPMEQRLKLSKHSDAPLVDSTG 988

Query: 2805 YKQIIGSLMYLTATRPDIMYCVNLLSRYMDQPTELHLLVAKRILGYLHGT 2656
            Y+ I+GSL YL  TR DI + V  +SR+M+ PT  H    KRIL Y+ GT
Sbjct: 989  YRSIVGSLRYLVHTRLDIAFAVGYVSRFMEAPTAEHEAAVKRILRYIAGT 1038



 Score = 70.9 bits (172), Expect(6) = e-152
 Identities = 30/80 (37%), Positives = 46/80 (57%)
 Frame = -1

Query: 4766 VVAKQHREPFPKGHAWRAKQAPKLVHSDICGPLNPKSSGNKRYFITFVDDFTRKTWVYIL 4587
            +++K  R PFP    +RA     LVH D+CGP++P + G K YF+  VDD +R  W+ +L
Sbjct: 345  IISKHRRSPFPTRAVYRATDRLDLVHGDLCGPISPATPGGKSYFLLLVDDHSRYMWLVLL 404

Query: 4586 QEKSEALSASQAYKTLVENE 4527
              K +A+ A   ++   E E
Sbjct: 405  ARKGDAVKAIMHFQASAEAE 424



 Score = 23.9 bits (50), Expect(6) = e-152
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 2651 DDRKSTSGYVFMLGSGSVS 2595
            D RK TSG +F LGS  ++
Sbjct: 1067 DTRKRTSGVMFFLGSSPMA 1085


>emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera]
          Length = 1088

 Score =  378 bits (970), Expect(3) = e-151
 Identities = 202/401 (50%), Positives = 256/401 (63%), Gaps = 5/401 (1%)
 Frame = -2

Query: 4168 PDEKRKKLHAKGEKCVLLGITEHSKAYKLYNPITVKLIVSRDVVFDEESTWMWYVSTAAK 3989
            PD KR KL AK  +C+LLG++E SKAY+L++PI+ K+I+SRDVVF+E+  W W  ++   
Sbjct: 426  PDHKRVKLDAKSLRCILLGVSEESKAYRLFDPISQKIIISRDVVFEEDQQWKW-DNSHEP 484

Query: 3988 NIPVNLDDDTNVELLPPPIEAEQHSQPGTPSSTIPSNVTMEIQQFXXXXXXXXXXXXPEA 3809
             I  +L+ +++ E        E+  + G       SN +   +                 
Sbjct: 485  AILADLEWESDEETDTEDDGNEEEPEAGEDMGNSESNDSDSFENGETTYED--------- 535

Query: 3808 PSDIPPVARPH--HTKSLPAWMQDYEVTGVNQFDE---TIAHFALFADSDPATFQEAVQD 3644
                   + PH   T+  P WMQDYE TG    DE    +A  ALF DSDP T+ +AV+ 
Sbjct: 536  -------STPHEGRTRRPPTWMQDYE-TGAGLSDEESVNLAQLALFTDSDPTTYDDAVRS 587

Query: 3643 PKWQQDMADEISSIQKNNTWELTDLPKGHKSIGVKWVYKTKLNAQGGIAKYKFGLVIKGY 3464
             KW+  M  EI +I++NNTWELTDLP G K+IGVKW++KTKLN  G + KYK  LV KGY
Sbjct: 588  EKWRLAMNQEIEAIERNNTWELTDLPSGGKTIGVKWIFKTKLNENGEVDKYKARLVAKGY 647

Query: 3463 KQQLGIGYTEVFAPVVRHDTIRLVLALEAQSLLPVFQFDVKSAFLHGELQEEVYVEQPPG 3284
             QQ G  Y EVFAPV R +TIR+V++L AQ    ++Q DVKSAFLHGE+ EE +VEQPPG
Sbjct: 648  SQQYGXDYVEVFAPVARLETIRIVISLAAQKDWMIYQLDVKSAFLHGEIHEEXFVEQPPG 707

Query: 3283 *VHLGNESKVYRLRKALYGLKQAPRAWYSRITTYFSNSGF*QCPYEPTLFLRSGSQGDIL 3104
                G ESKVYRL+KALYGLKQAPRAWYSRI +YF   GF +CPYE TLF ++   G IL
Sbjct: 708  YEQKGKESKVYRLKKALYGLKQAPRAWYSRIESYFIKEGFNKCPYEHTLFTKTAEGGKIL 767

Query: 3103 VVSLYVDDLIYTGNNTSMIDAFKSSMMSEFDMTDLGMLELF 2981
            +V LYVD+LI+TGN+ SM   FK SMM EFDMTDL  L  F
Sbjct: 768  IVCLYVDELIFTGNDESMFKQFKKSMMVEFDMTDLEKLRYF 808



 Score =  144 bits (363), Expect(3) = e-151
 Identities = 66/110 (60%), Positives = 88/110 (80%)
 Frame = -3

Query: 2985 YFLSIEIVQSSAGIFVSQQKYTRDVLARFHMKDCNAVGTPVDLGLKLTKDPEGKKIDSTM 2806
            YFL IE++Q + GIF++Q+KY ++VL RF++  CN V  PV  G KLT+D EG ++D T+
Sbjct: 807  YFLGIEVMQKTDGIFINQRKYAQEVLERFNLYQCNPVHNPVVPGFKLTRDKEGVEVDGTL 866

Query: 2805 YKQIIGSLMYLTATRPDIMYCVNLLSRYMDQPTELHLLVAKRILGYLHGT 2656
            YKQ++GSLMYLTATRPD+M+ V+L+SRYM+ PTE HLL AKRIL Y+ GT
Sbjct: 867  YKQMVGSLMYLTATRPDLMFSVSLISRYMEHPTESHLLAAKRILRYVKGT 916



 Score = 64.7 bits (156), Expect(3) = e-151
 Identities = 33/46 (71%), Positives = 37/46 (80%)
 Frame = -1

Query: 2666 YMVPQDDRKSTSGYVFMLGSGSVSWSSHKQPIVTLSTTEAGYVAAA 2529
            Y    DDRKSTSGYVFM  S +VSWSS KQP+VTLSTTEA ++AAA
Sbjct: 939  YAGDHDDRKSTSGYVFM-NSSAVSWSSKKQPVVTLSTTEAEFIAAA 983



 Score =  143 bits (361), Expect = 5e-31
 Identities = 70/132 (53%), Positives = 96/132 (72%), Gaps = 2/132 (1%)
 Frame = -3

Query: 4503 ALRSWRGI*FQG--LPQFCEVHDIRRKLTASYTPQQNGVAKRKSRTILNMVRSMLQTSRL 4330
            +LR+ RG  F       FC  + I R+LTA+YTPQQNGVA+RK+RTI+NMVRSML   ++
Sbjct: 312  SLRTDRGGEFTSNEFTSFCNENGILRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQI 371

Query: 4329 PKSFWPEAVLWSIRLLNRIPTIAVRNMTPLEAWNGRQPSAVHCRVFGCIAYAHVQMKRER 4150
            PK+FWPEAV W++ +LNR PT+AV+N TP EAW+GR+PS  H R+FGCI++ HV     +
Sbjct: 372  PKTFWPEAVNWTVHVLNRSPTLAVKNKTPEEAWSGRKPSVDHFRIFGCISHVHV--PDHK 429

Query: 4149 SFMLKARNVSCL 4114
               L A+++ C+
Sbjct: 430  RVKLDAKSLRCI 441



 Score = 85.5 bits (210), Expect = 2e-13
 Identities = 56/151 (37%), Positives = 75/151 (49%), Gaps = 2/151 (1%)
 Frame = -2

Query: 5758 DITIIEKILR--TTKFDYLVCSLEESKDLDTLSIDELMSSLPVHEQMINQHDIVEQTLQL 5585
            D+ IIEKILR  T+K+DY+VCS+EES DLDTLSIDEL SSL VHEQ I++H + EQ LQ+
Sbjct: 155  DVVIIEKILRSMTSKYDYVVCSIEESNDLDTLSIDELQSSLLVHEQRISRHVVDEQALQV 214

Query: 5584 SIQKSYTNXXXXXXXXXXXXRSEDXXXXXXXXXXGNYLREAKESKPFNKSNIRCYRCDRY 5405
            +                   R                         F+KS + CY C   
Sbjct: 215  TTGAQQGGRHGGRGAYRGRGRGNGRFG-------------------FDKSFLECYNCHEL 255

Query: 5404 GQFRSACHAKLSNEQEENSNLVETEDEPTLL 5312
            G F+  C  +    ++   N  ET++E  L+
Sbjct: 256  GHFQWECPKR---ARDPKVNYAETKEEMLLM 283