BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00002331
         (3571 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20740.3| unnamed protein product [Vitis vinifera]             1256   0.0  
ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a...  1249   0.0  
ref|XP_004158269.1| PREDICTED: LOW QUALITY PROTEIN: endoribonucl...  1144   0.0  
gb|AEC12444.1| ribonuclease III family protein DCL3 [Gossypium h...  1143   0.0  
ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis...  1091   0.0  

>emb|CBI20740.3| unnamed protein product [Vitis vinifera]
          Length = 1688

 Score = 1256 bits (3249), Expect = 0.0
 Identities = 670/1103 (60%), Positives = 804/1103 (72%), Gaps = 31/1103 (2%)
 Frame = -2

Query: 3570 SVTADSSVSLIYRFCEKLPGDLYFTPKPTFNFTLSGGFYECELTLPPSALLQRIVGPKAN 3391
            SVTADSSVSLI+R+CEKLPGD YFTPKP F+FT   G YEC+LTLPP+A  Q I+GP   
Sbjct: 588  SVTADSSVSLIHRYCEKLPGDKYFTPKPFFHFTYLEGMYECKLTLPPNAAFQTIIGPGNK 647

Query: 3390 NSHIAKQLVCLEACRKLHESGALDDHLRPSVEEPLADDEIKPNQGYASGAGTTKRKELHG 3211
            NSH++KQLVCLEAC+KLH+ GALDDHL P VEEP  +D I  ++G A+GAGTTKRKELHG
Sbjct: 648  NSHLSKQLVCLEACKKLHQMGALDDHLLPYVEEPSENDIIVKSKGSAAGAGTTKRKELHG 707

Query: 3210 TTAVRALXXXXXXXXXXXSLYAYRICFSCNQVDEFYSPFVLLIEAKLDDEVANAEVELFL 3031
            TT   AL              AY+I FSCN V+E YS FVLLIE+KLDD+V N E+EL+L
Sbjct: 708  TTQTCALSGTWGDKIDGAIFQAYKIDFSCNIVNELYSGFVLLIESKLDDDVGNIEMELYL 767

Query: 3030 VADKLVKSSLSPYGQLHLDTEQVKNAKVFQEFFFNGIFGKLFIGSKSSGIQRQFLLKDKT 2851
            ++ K V++S+S  GQ+ LD EQV  A  F E FFN +FG+LFIGSKSSG++R+FLL  + 
Sbjct: 768  IS-KFVRTSVSSCGQVSLDAEQVMKAMRFHELFFNSLFGRLFIGSKSSGVRREFLLNTQQ 826

Query: 2850 ISLWSSSNMYILLPIEST-VPTDDSLVVNWNGINACASAVEFVNK--QFSVVEKIFPSRN 2680
             SLWSSSNMY+LLPIES+ +P+D+S  +NW GIN+CAS VEF+ K  Q S       + N
Sbjct: 827  KSLWSSSNMYLLLPIESSNIPSDESWRINWPGINSCASVVEFLEKRSQLSTGNMNDDTGN 886

Query: 2679 LD---------ESKSPDVIYLANTSVLIHDLKDMVVLAIHTGKIYSVLEARIEMSAESSF 2527
                       E KS   ++LAN SV +++LK+MVVLAIHTG+IYS+L+  I+ SAES F
Sbjct: 887  PSPCSTGLVETECKSISTVHLANNSVHVNNLKNMVVLAIHTGRIYSILDVVIDTSAESPF 946

Query: 2526 DGEFDM-VPNYTSFREYFKEKYGIVLQYPGQPLLRLKQSHNPHNLLAKPKNGGGVAI--- 2359
            DG  D+   NYT+F EYF  KYGIVL YPGQPLL LKQSHN HNLL    + GG A+   
Sbjct: 947  DGSADVNSSNYTTFAEYFNNKYGIVLMYPGQPLLLLKQSHNAHNLLVNFNDEGGEALQTG 1006

Query: 2358 -----EKPLASVHMPAELLVPIDVSMGVLKSFYLLPSLMHRLESLMLAIQLREEIKSGPN 2194
                 EK    VHMP ELLV I+V + VLKS YLLPSL+HRLESLMLA QLREEI +   
Sbjct: 1007 QKMLNEKAQTHVHMPPELLVSIEVPITVLKSSYLLPSLIHRLESLMLASQLREEI-AFTT 1065

Query: 2193 NCHISSALILEALTSLRCCENFSLERLELLGDSVLKYVVSCTLFLKYPTKHEGQLSARRS 2014
               ISS+LILEA+T+LRC E+FS+ERLELLGDSVLKY VSC LFLKYP KHEGQLSARRS
Sbjct: 1066 GSQISSSLILEAITTLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRS 1125

Query: 2013 YAVCNSTLHKLGTSSKLQGYIRDSAFDPRRWIAPGQRTLRPVPCECGVNSSDVPLESEFV 1834
            + VCNSTLHKLGT   LQGYIRD AFDPRRW+APGQR++RPVPC CGV++ +VPL+ +F 
Sbjct: 1126 WVVCNSTLHKLGTDRSLQGYIRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQ 1185

Query: 1833 TEDTKTVVGKACDRGHRWMCSKTISDCVEXXXXXXXXXXXXXXXLTLMKWLGIDVEFEPT 1654
            TEDTK VVGK+CDRGHRWM SKTI+DCVE               L LMKW GIDVE EP+
Sbjct: 1186 TEDTKIVVGKSCDRGHRWMGSKTIADCVEALIGAYYVGGGLNAALHLMKWFGIDVELEPS 1245

Query: 1653 LIDKAIFSASLWCYTPNADVLQILEAKLDYSFTSKGLLLEAITHASQQEVGLSYCYQRLE 1474
            L+D+AI +ASL  Y P A+ ++ILE+K+ Y F+ KGLLLEAITHA++QE+G+ YCYQRLE
Sbjct: 1246 LVDEAIATASLRTYIPKANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLE 1305

Query: 1473 FLGDSVLDLLITRHLFESHTDVDPGELTDLRSACVNNENFAKVAIRHHLQQHLQHCSGLL 1294
            FLGDSVLD+LIT HL++SH D+DPGELTDLRSA VNNE+FA+VA+R +LQQHLQHCSGLL
Sbjct: 1306 FLGDSVLDVLITWHLYQSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLL 1365

Query: 1293 SEQITEYAKLILEGND-HSPFQRAKCPKALGDLIESIAGAILVDSRLNLDEIWRIFKPLL 1117
              QI EYAK +   +D  +P Q  K PKALGDL+ESIAGAIL+D++LNL+E+WRIFKPLL
Sbjct: 1366 LGQIKEYAKYLSGSDDVPNPLQSTKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLL 1425

Query: 1116 SPIVTPEKLELPPFRELNELCSRRGYFIKEICTRNEETVHVELRLQLEDVLLIGEGCDNR 937
            SPIVTP+KLELPP RELNELC   GYFIKE CT   E VH ELRLQ+ DVLL+GEGC   
Sbjct: 1426 SPIVTPDKLELPPLRELNELCDSLGYFIKEKCTNKGELVHAELRLQMIDVLLVGEGCGRN 1485

Query: 936  KKAAKGQAATRLLKDLEERGISHSRHVSRKNPEMETV-----XXXXXXXXXIRRQLXXXX 772
            KKAAKGQAA +LLK+LE+RGIS+SR  S++  +   +               +       
Sbjct: 1486 KKAAKGQAAAQLLKNLEKRGISYSRSNSKRRKQGADLVGVSSSLNMGGDACGQSNNEDSS 1545

Query: 771  XXXXXXXXXXXTGEYLAKLTADAAVAKDNR---NLAAPVV-VINKKKGAPRSTLYDLCKR 604
                       TG  L   T+ A    +N     L  PV+  IN KKG PRS+LY+LCKR
Sbjct: 1546 ELIKFHKKQKTTGMQLCTRTSIANNCLENACKPKLDTPVIKSINMKKGGPRSSLYELCKR 1605

Query: 603  MQWPMPTFDSSETKLRSPVQFGKGSESRIGFNIFVSKIKLHIPSSGPIEQTGEERADKKS 424
            +QWPMP+F+S E + R P+ FG+GSE R GFN F+S I LHIP+ G +E  G+ RADKKS
Sbjct: 1606 LQWPMPSFESKEQRSRFPIIFGEGSERREGFNSFISSISLHIPNCGVMECRGDHRADKKS 1665

Query: 423  SQDSAALAMLYELGRLGKCTIAD 355
            S DSAAL ML+EL R GK  I D
Sbjct: 1666 SLDSAALVMLHELQRRGKLIIHD 1688


>ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a-like [Vitis vinifera]
          Length = 1648

 Score = 1249 bits (3233), Expect = 0.0
 Identities = 663/1099 (60%), Positives = 798/1099 (72%), Gaps = 27/1099 (2%)
 Frame = -2

Query: 3570 SVTADSSVSLIYRFCEKLPGDLYFTPKPTFNFTLSGGFYECELTLPPSALLQRIVGPKAN 3391
            SVTADSSVSLI+R+CEKLPGD YFTPKP F+FT   G YEC+LTLPP+A  Q I+GP   
Sbjct: 580  SVTADSSVSLIHRYCEKLPGDKYFTPKPFFHFTYLEGMYECKLTLPPNAAFQTIIGPGNK 639

Query: 3390 NSHIAKQLVCLEACRKLHESGALDDHLRPSVEEPLADDEIKPNQGYASGAGTTKRKELHG 3211
            NSH++KQLVCLEAC+KLH+ GALDDHL P VEEP  +D I  ++G A+GAGTTKRKELHG
Sbjct: 640  NSHLSKQLVCLEACKKLHQMGALDDHLLPYVEEPSENDIIVKSKGSAAGAGTTKRKELHG 699

Query: 3210 TTAVRALXXXXXXXXXXXSLYAYRICFSCNQVDEFYSPFVLLIEAKLDDEVANAEVELFL 3031
            TT   AL              AY+I FSCN V+E YS FVLLIE+KLDD+V N E+EL+L
Sbjct: 700  TTQTCALSGTWGDKIDGAIFQAYKIDFSCNIVNELYSGFVLLIESKLDDDVGNIEMELYL 759

Query: 3030 VADKLVKSSLSPYGQLHLDTEQVKNAKVFQEFFFNGIFGKLFIGSKSSGIQRQFLLKDKT 2851
            ++ K V++S+S  GQ+ LD EQV  A  F E FFN +FG+LFIGSKSSG++R+FLL  + 
Sbjct: 760  IS-KFVRTSVSSCGQVSLDAEQVMKAMRFHELFFNSLFGRLFIGSKSSGVRREFLLNTQQ 818

Query: 2850 ISLWSSSNMYILLPIEST-VPTDDSLVVNWNGINACASAVEFVNK--QFSVVEKIFPSRN 2680
             SLWSSSNMY+LLPIES+ +P+D+S  +NW GIN+CAS VEF+ K  Q S       + N
Sbjct: 819  KSLWSSSNMYLLLPIESSNIPSDESWRINWPGINSCASVVEFLEKRSQLSTGNMNDDTGN 878

Query: 2679 LD---------ESKSPDVIYLANTSVLIHDLKDMVVLAIHTGKIYSVLEARIEMSAESSF 2527
                       E KS   ++LAN SV +++LK+MVVLAIHTG+IYS+L+  I+ SAES F
Sbjct: 879  PSPCSTGLVETECKSISTVHLANNSVHVNNLKNMVVLAIHTGRIYSILDVVIDTSAESPF 938

Query: 2526 DGEFDM-VPNYTSFREYFKEKYGIVLQYPGQPLLRLKQSHNPHNLLAK------PKNGGG 2368
            DG  D+   NYT+F EYF  KYGIVL YPGQPLL LKQSHN HNLL         + G  
Sbjct: 939  DGSADVNSSNYTTFAEYFNNKYGIVLMYPGQPLLLLKQSHNAHNLLVNFNDEDALQTGQK 998

Query: 2367 VAIEKPLASVHMPAELLVPIDVSMGVLKSFYLLPSLMHRLESLMLAIQLREEIKSGPNNC 2188
            +  EK    VHMP ELLV I+V + VLKS YLLPSL+HRLESLMLA QLREEI +     
Sbjct: 999  MLNEKAQTHVHMPPELLVSIEVPITVLKSSYLLPSLIHRLESLMLASQLREEI-AFTTGS 1057

Query: 2187 HISSALILEALTSLRCCENFSLERLELLGDSVLKYVVSCTLFLKYPTKHEGQLSARRSYA 2008
             ISS+LILEA+T+LRC E+FS+ERLELLGDSVLKY VSC LFLKYP KHEGQLSARRS+ 
Sbjct: 1058 QISSSLILEAITTLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWV 1117

Query: 2007 VCNSTLHKLGTSSKLQGYIRDSAFDPRRWIAPGQRTLRPVPCECGVNSSDVPLESEFVTE 1828
            VCNSTLHKLGT   LQGYIRD AFDPRRW+APGQR++RPVPC CGV++ +VPL+ +F TE
Sbjct: 1118 VCNSTLHKLGTDRSLQGYIRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQTE 1177

Query: 1827 DTKTVVGKACDRGHRWMCSKTISDCVEXXXXXXXXXXXXXXXLTLMKWLGIDVEFEPTLI 1648
            DTK VVGK+CDRGHRWM SKTI+DCVE               L LMKW GIDVE EP+L+
Sbjct: 1178 DTKIVVGKSCDRGHRWMGSKTIADCVEALIGAYYVGGGLNAALHLMKWFGIDVELEPSLV 1237

Query: 1647 DKAIFSASLWCYTPNADVLQILEAKLDYSFTSKGLLLEAITHASQQEVGLSYCYQRLEFL 1468
            D+AI +ASL  Y P A+ ++ILE+K+ Y F+ KGLLLEAITHA++QE+G+ YCYQRLEFL
Sbjct: 1238 DEAIATASLRTYIPKANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFL 1297

Query: 1467 GDSVLDLLITRHLFESHTDVDPGELTDLRSACVNNENFAKVAIRHHLQQHLQHCSGLLSE 1288
            GDSVLD+LIT HL++SH D+DPGELTDLRSA VNNE+FA+VA+R +LQQHLQHCSGLL  
Sbjct: 1298 GDSVLDVLITWHLYQSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLG 1357

Query: 1287 QITEYAKLILEGND-HSPFQRAKCPKALGDLIESIAGAILVDSRLNLDEIWRIFKPLLSP 1111
            QI EYAK +   +D  +P Q  K PKALGDL+ESIAGAIL+D++LNL+E+WRIFKPLLSP
Sbjct: 1358 QIKEYAKYLSGSDDVPNPLQSTKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLLSP 1417

Query: 1110 IVTPEKLELPPFRELNELCSRRGYFIKEICTRNEETVHVELRLQLEDVLLIGEGCDNRKK 931
            IVTP+KLELPP RELNELC   GYFIKE CT   E VH ELRLQ+ DVLL+GEGC   KK
Sbjct: 1418 IVTPDKLELPPLRELNELCDSLGYFIKEKCTNKGELVHAELRLQMIDVLLVGEGCGRNKK 1477

Query: 930  AAKGQAATRLLKDLEERGISHSRHVSRKNPEMETVXXXXXXXXXIRRQLXXXXXXXXXXX 751
            AAKGQAA +LLK+LE+RGIS+SR  S++  +   +                         
Sbjct: 1478 AAKGQAAAQLLKNLEKRGISYSRSNSKRRKQGADLVGVSSS------------------- 1518

Query: 750  XXXXTGEYLAKLTADAAVAKDNRN-------LAAPVVVINKKKGAPRSTLYDLCKRMQWP 592
                       +  DA    +N +       + A +  IN KKG PRS+LY+LCKR+QWP
Sbjct: 1519 ---------LNMGGDACGQSNNEDSSENYDFVFAVIKSINMKKGGPRSSLYELCKRLQWP 1569

Query: 591  MPTFDSSETKLRSPVQFGKGSESRIGFNIFVSKIKLHIPSSGPIEQTGEERADKKSSQDS 412
            MP+F+S E + R P+ FG+GSE R GFN F+S I LHIP+ G +E  G+ RADKKSS DS
Sbjct: 1570 MPSFESKEQRSRFPIIFGEGSERREGFNSFISSISLHIPNCGVMECRGDHRADKKSSLDS 1629

Query: 411  AALAMLYELGRLGKCTIAD 355
            AAL ML+EL R GK  I D
Sbjct: 1630 AALVMLHELQRRGKLIIHD 1648


>ref|XP_004158269.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog
            3a-like [Cucumis sativus]
          Length = 1639

 Score = 1144 bits (2959), Expect = 0.0
 Identities = 607/1097 (55%), Positives = 759/1097 (69%), Gaps = 25/1097 (2%)
 Frame = -2

Query: 3570 SVTADSSVSLIYRFCEKLPGDLYFTPKPTFNFTLSGGFYECELTLPPSALLQRIVGPKAN 3391
            SVTADSSV L+Y++C+KLPGD YF+PKP F  +   G YEC+LTLPP+A LQ IVGP   
Sbjct: 573  SVTADSSVGLVYQYCKKLPGDKYFSPKPIFQLSYGEGSYECQLTLPPTAALQTIVGPSTR 632

Query: 3390 NSHIAKQLVCLEACRKLHESGALDDHLRPSVEEPLADDEIKPNQGYASGAGTTKRKELHG 3211
            NS+++KQLVCLEAC+KLH+ GAL+DHL PSVEE    D    +    S AG+TKRKELHG
Sbjct: 633  NSNLSKQLVCLEACKKLHQMGALNDHLLPSVEEISESDMGLKSNASTSRAGSTKRKELHG 692

Query: 3210 TTAVRALXXXXXXXXXXXSLYAYRICFSCNQVDEFYSPFVLLIEAKLDDEVANAEVELFL 3031
             TA+RAL           +  AY+  FSC+ + E YS FVLLIE+KLDD+V+N E+EL+L
Sbjct: 693  RTAIRALSGTWEEQVEGTTFQAYKFDFSCSVIYEVYSGFVLLIESKLDDDVSNFELELYL 752

Query: 3030 VADKLVKSSLSPYGQLHLDTEQVKNAKVFQEFFFNGIFGKLFIGSKSSGIQRQFLLKDKT 2851
            ++ K+VK+S+S  G++HLD EQ+  AK FQE FFNG+FG+LFIGSK++G +R FLL+  T
Sbjct: 753  LS-KMVKASVSFGGEVHLDAEQITKAKCFQELFFNGLFGRLFIGSKTTGKKRDFLLQKDT 811

Query: 2850 ISLWSSSNMYILLPIESTVPTD---DSLVVNWNGINACASAVEFVNKQFSV--------- 2707
              LW SSNMY+LLP++  +P D   D   ++W  I++C S VEF+ K  S+         
Sbjct: 812  NPLWISSNMYLLLPVD--LPDDSTHDLWKIHWRAIDSCVSVVEFLKKNSSLDAERNYGAG 869

Query: 2706 -VEKIFPSRNLDE---SKSPDVIYLANTSVLIHDLKDMVVLAIHTGKIYSVLEARIEMSA 2539
             +    PSRN      S +  VI+ AN  + +H LKD VVLAIHTG+IYS++E     SA
Sbjct: 870  AISDSSPSRNNSTETGSNAASVIHFANCVLDVHSLKDRVVLAIHTGRIYSIVEVVSNTSA 929

Query: 2538 ESSFDGEFDM-VPNYTSFREYFKEKYGIVLQYPGQPLLRLKQSHNPHNLLAKPKNGG--- 2371
            ES FDG  D   P+Y +F +YF ++YGI L +P QPLLRLKQSHNPHNLL   K+ G   
Sbjct: 930  ESPFDGNSDKGPPDYITFADYFNKRYGISLSFPKQPLLRLKQSHNPHNLLVNFKDEGFDK 989

Query: 2370 ---GVAIEKPLASVHMPAELLVPIDVSMGVLKSFYLLPSLMHRLESLMLAIQLREEIKSG 2200
               G A ++P   VHMP EL++ +DV  GVLKS YLLPSL+HR ESLMLA QLR+EI   
Sbjct: 990  LPSGPAFKRPQMHVHMPPELVLSMDVPKGVLKSSYLLPSLIHRFESLMLASQLRKEINYH 1049

Query: 2199 PNNCHISSALILEALTSLRCCENFSLERLELLGDSVLKYVVSCTLFLKYPTKHEGQLSAR 2020
             N+  ISS+LILEALT+L  CENFSLERLELLGDSVLKY VSC LFLK+P KHEGQLS+R
Sbjct: 1050 SNSLGISSSLILEALTTLGSCENFSLERLELLGDSVLKYAVSCHLFLKFPEKHEGQLSSR 1109

Query: 2019 RSYAVCNSTLHKLGTSSKLQGYIRDSAFDPRRWIAPGQRTLRPVPCECGVNSSDVPLESE 1840
            R   +CN+TLH LGT   LQGYIRDSAFDPRRW+APGQ T RPVPC+CGV++ +VPL  +
Sbjct: 1110 RQQVICNATLHALGTKCGLQGYIRDSAFDPRRWVAPGQCTNRPVPCKCGVDTVEVPLHDK 1169

Query: 1839 FVTEDTKTVVGKACDRGHRWMCSKTISDCVEXXXXXXXXXXXXXXXLTLMKWLGIDVEFE 1660
            F TED K V+GK CD+GHRW+ SKTI+DC E               L +MKWLGIDV  +
Sbjct: 1170 FCTEDPKVVLGKCCDKGHRWVVSKTIADCAEALIGAYYVDGGIIAALHVMKWLGIDVNLD 1229

Query: 1659 PTLIDKAIFSASLWCYTPNADVLQILEAKLDYSFTSKGLLLEAITHASQQEVGLSYCYQR 1480
              L+  AI SASL         +  LE+K+ Y F  KGLLLEA+TH S QE+G++YCYQR
Sbjct: 1230 VALVVDAITSASLRSCPLGDTEIATLESKIGYDFAVKGLLLEAVTHTSDQEIGVNYCYQR 1289

Query: 1479 LEFLGDSVLDLLITRHLFESHTDVDPGELTDLRSACVNNENFAKVAIRHHLQQHLQHCSG 1300
            LEFLGDSVLDLLIT H +++++D+DPGELTDLRSA VNNENFA+VA+R +LQQHLQHCSG
Sbjct: 1290 LEFLGDSVLDLLITWHYYQNYSDIDPGELTDLRSASVNNENFAQVAVRRNLQQHLQHCSG 1349

Query: 1299 LLSEQITEYAKLILEGND-HSPFQRAKCPKALGDLIESIAGAILVDSRLNLDEIWRIFKP 1123
            LL  QITEY K + E  D   P    K PK LGD++ESIAGAIL+D++LNLDE+W+I+KP
Sbjct: 1350 LLMSQITEYVKYLSESQDTGKPLHGNKGPKVLGDMVESIAGAILIDTKLNLDEVWKIYKP 1409

Query: 1122 LLSPIVTPEKLELPPFRELNELCSRRGYFIKEICTRNEETVHVELRLQLEDVLLIGEGCD 943
            LL+P VTP+KLELPP REL ELC   GYFIK+ CTR  ET H ELRLQL+D LLIGEG +
Sbjct: 1410 LLTPFVTPDKLELPPLRELIELCDSLGYFIKDKCTRKGETFHAELRLQLQDSLLIGEGYE 1469

Query: 942  NRKKAAKGQAATRLLKDLEERGISHSRHVSRKNPEMETVXXXXXXXXXIRRQLXXXXXXX 763
              +KAA+G+AA RLL  LE RGIS+SR  S+K  +  +                      
Sbjct: 1470 RTRKAARGEAAHRLLAQLETRGISYSRSGSKKRKQNPS---------------------- 1507

Query: 762  XXXXXXXXTGEYLAKLTADAAVAKDNRNLAAPVV-VINKKKGAPRSTLYDLCKRMQWPMP 586
                        +   + + +    + N+  PV+  IN KKG PRSTL++LCK++QWPMP
Sbjct: 1508 ------HDESAMVLPSSVNCSTDACDPNVETPVIGPINLKKGGPRSTLFELCKKLQWPMP 1561

Query: 585  TFDSSETKLRSPVQFGKGSESRIGFNIFVSKIKLHIPSSGPIEQTGEERADKKSSQDSAA 406
            TF++ E K R  ++ G+G E R GFN F+S I L IP++G +E  GE RADKKSS DSA+
Sbjct: 1562 TFNTVENKSRVQIEIGEGLEKRKGFNSFLSNITLQIPNAGYVECEGEARADKKSSFDSAS 1621

Query: 405  LAMLYELGRLGKCTIAD 355
            L ML EL + G+  I D
Sbjct: 1622 LVMLQELQQQGRVIIND 1638


>gb|AEC12444.1| ribonuclease III family protein DCL3 [Gossypium hirsutum]
          Length = 1655

 Score = 1143 bits (2957), Expect = 0.0
 Identities = 611/1098 (55%), Positives = 764/1098 (69%), Gaps = 26/1098 (2%)
 Frame = -2

Query: 3570 SVTADSSVSLIYRFCEKLPGDLYFTPKPTFNFTLSGGFYECELTLPPSALLQRIVGPKAN 3391
            SVTADS+VSLI+++C KLPGD Y+TPKP F FT S G Y+C+LTLP +A +Q IVGP + 
Sbjct: 581  SVTADSAVSLIHKYCGKLPGDKYYTPKPNFQFTSSEGLYKCKLTLPVNAAVQTIVGPPSR 640

Query: 3390 NSHIAKQLVCLEACRKLHESGALDDHLRPSVEEPLADDEIKPNQ----GYASGAGTTKRK 3223
            NSH+AKQLVCLEAC++LH+ GALDDHL PS+EEP  +  I   +    G  +GAGTTKRK
Sbjct: 641  NSHLAKQLVCLEACKQLHQMGALDDHLTPSIEEPSENACISKGKDSGAGAGAGAGTTKRK 700

Query: 3222 ELHGTTAVRALXXXXXXXXXXXSLYAYRICFSCNQVDEFYSPFVLLIEAKLDDEVANAEV 3043
            ELHGTT ++AL             +AY+  F CN +   YS FVLLIE+KL D+V N E+
Sbjct: 701  ELHGTTCIQALCGSWGEKSDDAVFFAYKFDFKCNIITVVYSGFVLLIESKLADDVGNTEM 760

Query: 3042 ELFLVADKLVKSSLSPYGQLHLDTEQVKNAKVFQEFFFNGIFGKLFIGSKSSGIQRQFLL 2863
            +LFL+  K+VK+S+S  GQ+ L+ EQ+  AK FQEFFFNG+FGKLF+GSKSSG  R+FLL
Sbjct: 761  DLFLIG-KMVKASVSSCGQVRLNAEQMMKAKRFQEFFFNGLFGKLFVGSKSSGAPREFLL 819

Query: 2862 KDKTISLWSSSNMYILLPIESTVPTDDSLVVNWNGINACASAVEFVNKQFSVVEKIF--- 2692
            +DKT SLWS S MY+LLP+E    + D L ++W GI AC  A EF+NK   +  +     
Sbjct: 820  RDKTSSLWSPSRMYLLLPLEDN--STDELRIHWPGITACTLAAEFLNKNSLLGTEQSDDG 877

Query: 2691 ---PSRN-----LDESKSPDVIYLANTSVLIHDLKDMVVLAIHTGKIYSVLEARIEMSAE 2536
               PS N     + + K  ++I  AN+SV  + L++ VVLAIHTG+IY ++EA  + +AE
Sbjct: 878  GSNPSLNSTGSPVTDCKETNIIRFANSSVDANSLRNTVVLAIHTGRIYCIIEAVSDKTAE 937

Query: 2535 SSFDGEFDMVPN-YTSFREYFKEKYGIVLQYPGQPLLRLKQSHNPHNLLAKPKNGG---- 2371
            SSF    D V + + +F EYF +KY IVL++PGQPL+ LKQSHNPHNLL    + G    
Sbjct: 938  SSFAETVDTVSSEFANFYEYFYKKYNIVLKHPGQPLMLLKQSHNPHNLLVNFNDEGVSAK 997

Query: 2370 ----GVAIEKPLASVHMPAELLVPIDVSMGVLKSFYLLPSLMHRLESLMLAIQLREEIKS 2203
                GV  EKP   VHMP ELL+ +DV + VLKS YLLPSLMHRLESLMLA QLREEI  
Sbjct: 998  ASQAGVVNEKPRFHVHMPPELLLVLDVPVSVLKSLYLLPSLMHRLESLMLANQLREEINF 1057

Query: 2202 GPNNCHISSALILEALTSLRCCENFSLERLELLGDSVLKYVVSCTLFLKYPTKHEGQLSA 2023
              +N  I S++ILEALT+LRCCE+FS+ERLELLGDSVLKY VSC LFL+YP KHEGQLSA
Sbjct: 1058 CSSNIDIPSSMILEALTTLRCCESFSMERLELLGDSVLKYAVSCHLFLRYPNKHEGQLSA 1117

Query: 2022 RRSYAVCNSTLHKLGTSSKLQGYIRDSAFDPRRWIAPGQRTLRPVPCECGVNSSDVPLES 1843
            RRS AVCNSTLHKLGT  K+QGYIRDSAFDPRRW+APGQR LRPVPC+CGV+S +VPL+ 
Sbjct: 1118 RRSLAVCNSTLHKLGTDHKIQGYIRDSAFDPRRWVAPGQRVLRPVPCKCGVDSLEVPLDK 1177

Query: 1842 EFVTEDTKTVVGKACDRGHRWMCSKTISDCVEXXXXXXXXXXXXXXXLTLMKWLGIDVEF 1663
            +F TED K  VGK+CDRGHRW+CSKTISDCVE               L +MKWLGID E 
Sbjct: 1178 KFQTEDPKVKVGKSCDRGHRWLCSKTISDCVEALIGAYYLSGGLVAALHVMKWLGIDAEL 1237

Query: 1662 EPTLIDKAIFSASLWCYTPNADVLQILEAKLDYSFTSKGLLLEAITHASQQEVGLSYCYQ 1483
            +P ++ + I  ASL  Y PN ++  ++E+K+ Y+F+ K  L EA+TH S  E   SYCYQ
Sbjct: 1238 DPLVVAEVINQASLRTYVPNYEI-HMIESKVGYNFSVKFFLQEALTHESLHE---SYCYQ 1293

Query: 1482 RLEFLGDSVLDLLITRHLFESHTDVDPGELTDLRSACVNNENFAKVAIRHHLQQHLQHCS 1303
            RLEFLGDSVLDLLIT++L+  HT++DPGELTDLRSA VNNENFA+VA+RH L +HLQHCS
Sbjct: 1294 RLEFLGDSVLDLLITQYLYNHHTNIDPGELTDLRSASVNNENFAQVAVRHDLHKHLQHCS 1353

Query: 1302 GLLSEQITEYAKLILEGNDHSPFQRA-KCPKALGDLIESIAGAILVDSRLNLDEIWRIFK 1126
             LLS QI+EY +   E ++ +    + K PKALGDL+ESI GAIL+D+ LNLD++WRI +
Sbjct: 1354 TLLSNQISEYVQSFTESDNTTRLDPSIKGPKALGDLVESIVGAILIDTNLNLDKVWRIVE 1413

Query: 1125 PLLSPIVTPEKLELPPFRELNELCSRRGYFIKEICTRNEETVHVELRLQLEDVLLIGEGC 946
            PLLSPIVTP+KLELPPFRELNELC   GYFIKE C    E VH EL LQL+  LL+GEG 
Sbjct: 1414 PLLSPIVTPDKLELPPFRELNELCDSLGYFIKEKCKNKGEVVHAELLLQLDHDLLVGEGF 1473

Query: 945  DNRKKAAKGQAATRLLKDLEERGISHSRHVSRKNPEMETVXXXXXXXXXIRRQLXXXXXX 766
            D  +K AKG+AA+ LLKDLE RGIS  +         +T+          +RQ       
Sbjct: 1474 DRSRKVAKGKAASCLLKDLENRGISRKKRKHDCVDSSQTMEDDSLEPTIPKRQRRAEIQ- 1532

Query: 765  XXXXXXXXXTGEYLAKLTADAAVAKDNRNLAAPVVV-INKKKGAPRSTLYDLCKRMQWPM 589
                               D +    +   A PV+V +  KKG PR+TL++LCK++ WPM
Sbjct: 1533 -----------------LLDESKKACSATPATPVIVTVKTKKGGPRTTLFELCKKLLWPM 1575

Query: 588  PTFDSSETKLRSPVQFGKGSESRIGFNIFVSKIKLHIPSSGPIEQTGEERADKKSSQDSA 409
            P+  ++E K  +P++ G+G E + GF  FVSKI L++P    IE TG+ +ADKKSS DSA
Sbjct: 1576 PSIKATEHKSSAPMEIGEGPERKKGFISFVSKIILNVPGYDIIECTGDAKADKKSSSDSA 1635

Query: 408  ALAMLYELGRLGKCTIAD 355
            AL MLYEL + GK  I +
Sbjct: 1636 ALFMLYELEQRGKLIIEE 1653


>ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis]
            gi|223544646|gb|EEF46162.1| Ribonuclease III, putative
            [Ricinus communis]
          Length = 1660

 Score = 1091 bits (2822), Expect = 0.0
 Identities = 584/1082 (53%), Positives = 733/1082 (67%), Gaps = 10/1082 (0%)
 Frame = -2

Query: 3570 SVTADSSVSLIYRFCEKLPGDLYFTPKPTFNFTLSGGFYECELTLPPSALLQRIVGPKAN 3391
            SVTADSSV+LI R+C KLP D YFTP+PTF F      ++C++ LP SA  Q IVGP   
Sbjct: 595  SVTADSSVTLIQRYCSKLPSDRYFTPRPTFEFECFEQSFQCKMMLPASAAFQTIVGPVCR 654

Query: 3390 NSHIAKQLVCLEACRKLHESGALDDHLRPSVEEPLADDEIKPNQGYASGAGTTKRKELHG 3211
            +  +AKQL CLEAC++LH+ GALDDHL PSVEEP  DD     +G  +GAGTTKRKELHG
Sbjct: 655  SQQLAKQLACLEACKQLHQMGALDDHLLPSVEEPTEDDHTVRRKGSLAGAGTTKRKELHG 714

Query: 3210 TTAVRALXXXXXXXXXXXSLYAYRICFSCNQVDEFYSPFVLLIEAKLDDEVANAEVELFL 3031
            TT + AL           + +AY+  FSC+ V E YS ++LLIE+KLDD+V N E++LFL
Sbjct: 715  TTPIHALSGSWGENLDGATFHAYKFEFSCSIVSEKYSGYILLIESKLDDDVGNIELDLFL 774

Query: 3030 VADKLVKSSLSPYGQLHLDTEQVKNAKVFQEFFFNGIFGKLFIGSKSSGIQRQFLLKDKT 2851
            V  K V++S+S  GQ+HLD EQ+  AK F E FFN +FGKLF GSKSS   R+FLL+ +T
Sbjct: 775  VR-KTVRASVSSCGQVHLDAEQMMKAKCFHELFFNALFGKLFSGSKSSRSPREFLLQKET 833

Query: 2850 ISLWSSSNMYILLPIES-TVPTDDSLVVNWNGINACASAVEFVNKQ-FSVVEKIFPSR-- 2683
              LW  SNMY+LLP+E+ +  +D+S  +NW G+N C++ VEF+ K  F   E     R  
Sbjct: 834  SLLWILSNMYLLLPLEAFSASSDESWKINWRGVNGCSNVVEFLKKNCFLGAEHYNGERVR 893

Query: 2682 -NLDESKSPDVIYLANTSVLIHDLKDMVVLAIHTGKIYSVLEARIEMSAESSFDGEFDMV 2506
             ++ E    + ++ AN SV +  +KDMVVLAIHTGKIYSV+E   + SAES F+      
Sbjct: 894  SSVTECSGGNAVHFANISVDVERVKDMVVLAIHTGKIYSVVEVVGDASAESPFEQNVGGA 953

Query: 2505 PN-YTSFREYFKEKYGIVLQYPGQPLLRLKQSHNPHNLLAKPKNG---GGVAIEKPLASV 2338
            P+ +++F EYF +KYGIVL  P QPLL LKQSH PHNLL  P       G+ + K     
Sbjct: 954  PSKFSTFSEYFNKKYGIVLLRPRQPLLLLKQSHKPHNLLNPPDEDTLKDGLVVAKQRQFA 1013

Query: 2337 HMPAELLVPIDVSMGVLKSFYLLPSLMHRLESLMLAIQLREEIKSGPNNCHISSALILEA 2158
             MP ELLV IDV +  LKS YLLPSLM+RLESLMLA QLR+EI    +N HI S LILEA
Sbjct: 1014 RMPPELLVSIDVPIQTLKSSYLLPSLMYRLESLMLASQLRQEIACQVSNFHIPSLLILEA 1073

Query: 2157 LTSLRCCENFSLERLELLGDSVLKYVVSCTLFLKYPTKHEGQLSARRSYAVCNSTLHKLG 1978
            +T+ R CE  S+ERLELLGDSVLKY VSC LFL+YPTKHEGQLSA+R+ AVCNSTLH+LG
Sbjct: 1074 ITTPRSCEKVSMERLELLGDSVLKYSVSCDLFLRYPTKHEGQLSAQRTRAVCNSTLHQLG 1133

Query: 1977 TSSKLQGYIRDSAFDPRRWIAPGQRTLRPVPCECGVNSSDVPLESEFVTEDTKTVVGKAC 1798
               KLQGYIRDSAF PR W+APGQ+    V C CGV++ +VPL+++F TED K  +   C
Sbjct: 1134 IGCKLQGYIRDSAFIPRYWVAPGQQPAFYVSCTCGVDTLEVPLDAKFQTEDPKVQIAICC 1193

Query: 1797 DRGHRWMCSKTISDCVEXXXXXXXXXXXXXXXLTLMKWLGIDVEFEPTLIDKAIFSASLW 1618
             +GHRWMCSKTISDCVE               L +M+WLG+DVEF+P+L+DK I +AS+ 
Sbjct: 1194 SKGHRWMCSKTISDCVEAVIGAYYVSGGLMAALHVMQWLGMDVEFDPSLVDKIIKTASVR 1253

Query: 1617 CYTPNADVLQILEAKLDYSFTSKGLLLEAITHASQQEVGLSYCYQRLEFLGDSVLDLLIT 1438
             YTP  D ++ +E+KL Y+F+ K LL EA+THAS QE G+ YCYQRLEFLGDSVLDLLIT
Sbjct: 1254 SYTPKEDEIKGIESKLGYTFSVKFLLQEAMTHASMQEQGIGYCYQRLEFLGDSVLDLLIT 1313

Query: 1437 RHLFESHTDVDPGELTDLRSACVNNENFAKVAIRHHLQQHLQHCSGLLSEQITEYAKLIL 1258
             HL+++HT +DPGELTDLRSACV+NENFA+V +R  L +HLQHCS LL  QI EY +   
Sbjct: 1314 WHLYQNHTSMDPGELTDLRSACVSNENFAQVVVRRDLYKHLQHCSTLLLSQIKEYLESFH 1373

Query: 1257 EGNDHSPFQRAKCPKALGDLIESIAGAILVDSRLNLDEIWRIFKPLLSPIVTPEKLELPP 1078
            E ++ +     K PKALGDL+ESIAGA+L+D++LNLDE+WRIF PLLSP+ TP+ LELPP
Sbjct: 1374 ESDEVAKATGPKGPKALGDLLESIAGAMLIDAKLNLDEVWRIFMPLLSPLATPQNLELPP 1433

Query: 1077 FRELNELCSRRGYFIKEICTRNEETVHVELRLQLEDVLLIGEGCDNRKKAAKGQAATRLL 898
             REL +LC+  GYFIKE C  N + VH ELRLQL DVLL+G GCD  +KAAKG+AAT LL
Sbjct: 1434 LRELMQLCNSLGYFIKEKCINNNDIVHAELRLQLNDVLLVGNGCDRSRKAAKGKAATHLL 1493

Query: 897  KDLEERGISHS-RHVSRKNPEMETVXXXXXXXXXIRRQLXXXXXXXXXXXXXXXTGEYLA 721
            K LE RGI++S  H  R+  +   V           +                 +G    
Sbjct: 1494 KKLENRGITYSWGHSKRRKQDSNHVVDSSPLDITNDKAKDHKKPKKLENQSPAGSG---- 1549

Query: 720  KLTADAAVAKDNRNLAAPVVVINKKKGAPRSTLYDLCKRMQWPMPTFDSSETKLRSPVQF 541
                       + + A  +  IN KKG PR+ L++LCK++QW  PT+ S+E K  +P+ F
Sbjct: 1550 ----------GDPSFAGIIEAINMKKGGPRTDLFELCKKVQWTTPTYSSTENKSSTPILF 1599

Query: 540  GKGSESRIGFNIFVSKIKLHIPSSGPIEQTGEERADKKSSQDSAALAMLYELGRLGKCTI 361
             +G E    +N FVS I L+IP  G IE TG+ R DKKSS D+AALAMLYEL + G   I
Sbjct: 1600 DEGIER---YNSFVSTITLNIPFYGTIECTGDPRPDKKSSCDTAALAMLYELQKQGLLII 1656

Query: 360  AD 355
             D
Sbjct: 1657 GD 1658