BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00002261
         (3881 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACV87353.1| phytochrome A [Aquilegia formosa]                     1979   0.0  
ref|XP_002278610.1| PREDICTED: phytochrome A1 [Vitis vinifera] g...  1839   0.0  
gb|ACC60969.1| phytochrome A [Vitis riparia]                         1838   0.0  
ref|XP_002512596.1| phytochrome A, putative [Ricinus communis] g...  1795   0.0  
ref|XP_002318913.1| phytochrome [Populus trichocarpa] gi|2228572...  1778   0.0  

>gb|ACV87353.1| phytochrome A [Aquilegia formosa]
          Length = 1130

 Score = 1979 bits (5128), Expect = 0.0
 Identities = 988/1114 (88%), Positives = 1044/1114 (93%), Gaps = 2/1114 (0%)
 Frame = -3

Query: 3621 ARVIAQTSVDAKLHAEFEESGSSFDYXXXXXXXXXXXXXXNQQPRSDKVTTAYLHHIQKG 3442
            ARVIAQT+VDAKLHAEFEE+GSSFDY               QQ RSDKVTTAYLH IQKG
Sbjct: 20   ARVIAQTTVDAKLHAEFEETGSSFDYSRSVSVTNSSN----QQTRSDKVTTAYLHQIQKG 75

Query: 3441 KQIQPFGCLLALDEKTCRVIAYSENAPEMLTMVSHAVPSVGENPVLGIGTDLRTIFTSPS 3262
            KQIQPFGCLLALDEKTC+VIAYSENAPEMLTMVSHAVPSVGE+PVLGIGTDL+TI TSPS
Sbjct: 76   KQIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDLKTILTSPS 135

Query: 3261 ASALQKALGFGDVSLLNPILVHCKSSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGA 3082
            ASALQKAL F DV+LLNPILVHCKSSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGA
Sbjct: 136  ASALQKALAFSDVTLLNPILVHCKSSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGA 195

Query: 3081 LQSYKLAAKAIARLQSLPSGNINRLCDTVVQEVFELTGYDRVMAYKFHDDDHGEVVSETT 2902
            LQSYKLAAKAIARLQSLPSG+I+RLCDTVV+EVF+LTGYDRVM YKFHDDDHGEVVSETT
Sbjct: 196  LQSYKLAAKAIARLQSLPSGSIDRLCDTVVEEVFQLTGYDRVMVYKFHDDDHGEVVSETT 255

Query: 2901 KDGLPPYLGLHYPATDIPQAARFLFMKNKIRMICDCRAKHVRVLQDERLPFDLTLCGSTL 2722
            K+GLPPYLGLHYPATDIPQAARFLFMKNKIRMICDCRAKHVRVLQDE+LPF+LTLCGSTL
Sbjct: 256  KEGLPPYLGLHYPATDIPQAARFLFMKNKIRMICDCRAKHVRVLQDEKLPFELTLCGSTL 315

Query: 2721 RAPHSCHLQYMENMDSIASLVMAVIINDGDEEDESA-GPAQSQKRKRLWGLVVCHNTTPR 2545
            RAPHSCHLQYMENMDSIASLVMAV+INDGDEE+ +  G +QSQKRKRLWGLVVCHNTTPR
Sbjct: 316  RAPHSCHLQYMENMDSIASLVMAVVINDGDEEEGTVEGASQSQKRKRLWGLVVCHNTTPR 375

Query: 2544 FVPFPLRYACEFLIQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRNAPLGIVSQSP 2365
            FVPFPLRYACEFLIQVFAIHVNKE ELENQILEKNILRTQTLLCDMLMRNAP+GIVSQSP
Sbjct: 376  FVPFPLRYACEFLIQVFAIHVNKEFELENQILEKNILRTQTLLCDMLMRNAPIGIVSQSP 435

Query: 2364 NIMDLVKCDGAALLYKNKIWKLGLSPSELHIRDIASWLSEYHMDSTGLSTDSLYDAGFPG 2185
            NIMDLVKCDGAALLY+NKIW+LGLSPSE HIRDIASWLSEYHMDSTGLSTDSLYDAGFPG
Sbjct: 436  NIMDLVKCDGAALLYQNKIWRLGLSPSESHIRDIASWLSEYHMDSTGLSTDSLYDAGFPG 495

Query: 2184 ALSIGDTVCGMAAVRINDKDMLFWFRSHTAAEIQWGGAKHDPAEKDDGRKMHPRSSFKAF 2005
            ALSIGDTVCGMAAVRIN KDMLFWFRSHTA EI+WGGAKH+P EKDDGRKMHPRSSFKAF
Sbjct: 496  ALSIGDTVCGMAAVRINSKDMLFWFRSHTAGEIRWGGAKHEPGEKDDGRKMHPRSSFKAF 555

Query: 2004 LEVVKTRSTPWKDYEMDAIHSLQLILRNAFKDSETAGGNTTVIHSQLDNLKIDGMQELEA 1825
            LEVVKTRS PWKD+EMDAIHSLQLILRN FKD ETA GNT VIHSQLD LKIDGM+ELEA
Sbjct: 556  LEVVKTRSFPWKDFEMDAIHSLQLILRNTFKDIETADGNTNVIHSQLDKLKIDGMEELEA 615

Query: 1824 VTNEMVRLIETATVPILAVDINGLINGWNTKIAELTGLPVDQVIGKHFLKLVEDSSVDTV 1645
            VTNEMVRLIETATVPILAVDINGLINGWNTKIAELTGLPVDQVIGKHFLKLVE+SS +TV
Sbjct: 616  VTNEMVRLIETATVPILAVDINGLINGWNTKIAELTGLPVDQVIGKHFLKLVEESSAETV 675

Query: 1644 RKMLHLALLGKEEQNVHFEMKTHGSRKDSGPVSLVVNACASRDLQENVVGVCFVAQDITS 1465
            ++MLHLALLGKEEQNVHFEMKTHGS+KDSGPVSLVVNACASRDLQENVVGVCFVA D+T+
Sbjct: 676  KRMLHLALLGKEEQNVHFEMKTHGSKKDSGPVSLVVNACASRDLQENVVGVCFVAHDLTN 735

Query: 1464 QKTVMDKFTRIEGDYKAILQNPSPLIPPIFGTDEFGWCCEWNPAMAKLSGWDRGEVMDKM 1285
            QK VMDKFTRIEGDYKAILQNPSPL PPIFGTDEFGWCCEWNPAM KLSGWDR EVMDKM
Sbjct: 736  QKMVMDKFTRIEGDYKAILQNPSPLYPPIFGTDEFGWCCEWNPAMTKLSGWDRAEVMDKM 795

Query: 1284 LLGEIFGIHMACCRVKNQETFVNLGIVLNGAMMGEGTEKVSFGFFGRNGKYVDCLLSVCK 1105
            LLGEIFG +M+CCR+KNQETFVNLGIVLNGAMMGE T+KVSFGFFGRNG YVDCLLSV K
Sbjct: 796  LLGEIFGTNMSCCRLKNQETFVNLGIVLNGAMMGEETDKVSFGFFGRNGNYVDCLLSVTK 855

Query: 1104 KVDAEGVVTGVFCFLHTVSQELQQALHVQRLSEQTALKKSKTLAYMKRQIRNPLSGIIFS 925
            KVD EGVVTGVFCFLHTVSQELQQALHVQRLSEQ+AL+KSK L YMKRQIRNPLSGIIFS
Sbjct: 856  KVDGEGVVTGVFCFLHTVSQELQQALHVQRLSEQSALQKSKGLTYMKRQIRNPLSGIIFS 915

Query: 924  RKMMEGTYLDEEQKQLLHTSMHCQRQLHKVLDDTDLESIMDGYVDLEMVEFTLQDVLFTS 745
             KMM GT LDEEQKQLLHTSMHCQRQLHKVL+DTDLE IMDGYVD +M+EFTL++VL T 
Sbjct: 916  GKMMGGTDLDEEQKQLLHTSMHCQRQLHKVLEDTDLERIMDGYVDSKMIEFTLREVLITC 975

Query: 744  ISQVKIKSDGKSLRITYDSLEDIMTESLYGDSLRLQQVLADFMLVSVNFTPRGGQLGVSA 565
            ISQVKI+SD +SLR T DSLED MTE+LYGDSLRLQQVLADFMLVSV FTP+GGQ+G+SA
Sbjct: 976  ISQVKIESDRRSLRFTNDSLEDFMTETLYGDSLRLQQVLADFMLVSVKFTPKGGQIGISA 1035

Query: 564  SLTRDRLGESVHLVHLELRLTHSGGGIPEELLGEMFENDSDTSEEGISLLVCRKLLRLMN 385
            SLTR+RLGESVHL HLELRLTHSGGGIPEELL  MFE+DS+ SEEG+SLLVCRKLL++MN
Sbjct: 1036 SLTRNRLGESVHLAHLELRLTHSGGGIPEELLSHMFESDSEASEEGVSLLVCRKLLKVMN 1095

Query: 384  GDVRYLREAGKSSFIISVELASAPK-*TRTISGG 286
            GDV+YLREAGKSSFII VELASA K  +R ISGG
Sbjct: 1096 GDVQYLREAGKSSFIIPVELASASKSHSRDISGG 1129


>ref|XP_002278610.1| PREDICTED: phytochrome A1 [Vitis vinifera]
            gi|147838424|emb|CAN76586.1| hypothetical protein
            VITISV_020287 [Vitis vinifera]
            gi|183239014|gb|ACC60965.1| phytochrome A [Vitis
            vinifera] gi|296089871|emb|CBI39690.3| unnamed protein
            product [Vitis vinifera]
          Length = 1124

 Score = 1839 bits (4764), Expect = 0.0
 Identities = 899/1104 (81%), Positives = 1002/1104 (90%)
 Frame = -3

Query: 3621 ARVIAQTSVDAKLHAEFEESGSSFDYXXXXXXXXXXXXXXNQQPRSDKVTTAYLHHIQKG 3442
            AR+IAQT+VDAKLHA+FEESGSSFDY               QQPRSDKVTTAYLHHIQKG
Sbjct: 20   ARIIAQTTVDAKLHADFEESGSSFDYSSSVRFTPAGGD---QQPRSDKVTTAYLHHIQKG 76

Query: 3441 KQIQPFGCLLALDEKTCRVIAYSENAPEMLTMVSHAVPSVGENPVLGIGTDLRTIFTSPS 3262
            K IQPFG LLALDEKT +VIAYSENAPEMLTMVSHAVPSVGE+PVLGIGTD+RTIF+ PS
Sbjct: 77   KLIQPFGSLLALDEKTFKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIFSGPS 136

Query: 3261 ASALQKALGFGDVSLLNPILVHCKSSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGA 3082
            ASAL KALGFG+VSLLNPILVHCK+SGKPFYAI+HRVTGSLIIDFEPVKPYEVPMTAAGA
Sbjct: 137  ASALHKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGA 196

Query: 3081 LQSYKLAAKAIARLQSLPSGNINRLCDTVVQEVFELTGYDRVMAYKFHDDDHGEVVSETT 2902
            LQSYKLAAKAI RLQSLPSG++ RLCDT+VQEVFELTGYDRVMAYKFHDDDHGEVVSE T
Sbjct: 197  LQSYKLAAKAITRLQSLPSGSLERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEIT 256

Query: 2901 KDGLPPYLGLHYPATDIPQAARFLFMKNKIRMICDCRAKHVRVLQDERLPFDLTLCGSTL 2722
            K GL PYLGLHYPATDIPQAARFLFMKNK+RMICDCRAKH++VLQDE+LPFDLTLCGSTL
Sbjct: 257  KPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHIQVLQDEKLPFDLTLCGSTL 316

Query: 2721 RAPHSCHLQYMENMDSIASLVMAVIINDGDEEDESAGPAQSQKRKRLWGLVVCHNTTPRF 2542
            RAPHSCH+QYMENM+SIASLVMAV++NDGDEE ES+   Q QKRKRLWGLVVCH+TTPRF
Sbjct: 317  RAPHSCHVQYMENMNSIASLVMAVVVNDGDEEGESSNSGQPQKRKRLWGLVVCHHTTPRF 376

Query: 2541 VPFPLRYACEFLIQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRNAPLGIVSQSPN 2362
            VPFPLRYACEFL QVFAIHVNKELELE+QILEKNILRTQTLLCDMLMR+APLGIVSQSPN
Sbjct: 377  VPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVSQSPN 436

Query: 2361 IMDLVKCDGAALLYKNKIWKLGLSPSELHIRDIASWLSEYHMDSTGLSTDSLYDAGFPGA 2182
            +MDLVKCDGAALLYKNK+W+LG++PS+  + DI SWLSEYHMDSTGLSTDSLYDAG+PGA
Sbjct: 437  VMDLVKCDGAALLYKNKVWRLGITPSDFQLHDICSWLSEYHMDSTGLSTDSLYDAGYPGA 496

Query: 2181 LSIGDTVCGMAAVRINDKDMLFWFRSHTAAEIQWGGAKHDPAEKDDGRKMHPRSSFKAFL 2002
            L++GD VCGMAAV+I  KD LFWFRSHTAAE++WGGAKH+P EKDDGRKMHPRSSFKAFL
Sbjct: 497  LALGDAVCGMAAVKITSKDTLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKAFL 556

Query: 2001 EVVKTRSTPWKDYEMDAIHSLQLILRNAFKDSETAGGNTTVIHSQLDNLKIDGMQELEAV 1822
            EVVKTRS PWKDYEMDAIHSLQLILRNAFKDSE    NT  IH++L++LKI+GMQELEAV
Sbjct: 557  EVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSEAMDVNTNAIHTKLNDLKIEGMQELEAV 616

Query: 1821 TNEMVRLIETATVPILAVDINGLINGWNTKIAELTGLPVDQVIGKHFLKLVEDSSVDTVR 1642
            T+EMVRLIETA+VPILAVD++GL+NGWNTKI+ELT LPVD+ IG H L LVEDSS DTV+
Sbjct: 617  TSEMVRLIETASVPILAVDVDGLVNGWNTKISELTSLPVDKAIGMHLLTLVEDSSADTVK 676

Query: 1641 KMLHLALLGKEEQNVHFEMKTHGSRKDSGPVSLVVNACASRDLQENVVGVCFVAQDITSQ 1462
            KMLHLAL G+EEQNV FE+KTHGS++DSGP+SLVVNACASRDL ENVVGVCFVAQDITSQ
Sbjct: 677  KMLHLALQGQEEQNVQFEIKTHGSKRDSGPISLVVNACASRDLHENVVGVCFVAQDITSQ 736

Query: 1461 KTVMDKFTRIEGDYKAILQNPSPLIPPIFGTDEFGWCCEWNPAMAKLSGWDRGEVMDKML 1282
            KTVMDKFTRIEGDYKAI+QNP+PLIPPIFGTDEFGWC EWNPAM KLSGW+R EVMDKML
Sbjct: 737  KTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMVKLSGWNREEVMDKML 796

Query: 1281 LGEIFGIHMACCRVKNQETFVNLGIVLNGAMMGEGTEKVSFGFFGRNGKYVDCLLSVCKK 1102
            LGE+FG HMACCR+KN+E FV LGIVLN  M G  +EKVSFGFF ++GKYV+CLLSV KK
Sbjct: 797  LGEVFGTHMACCRLKNREAFVGLGIVLNSVMTGRESEKVSFGFFSKSGKYVECLLSVSKK 856

Query: 1101 VDAEGVVTGVFCFLHTVSQELQQALHVQRLSEQTALKKSKTLAYMKRQIRNPLSGIIFSR 922
            +D EG VTGVFCFL   SQELQQALH+QRLSEQTALK+ K LAY+KRQI+NPLSGIIFSR
Sbjct: 857  LDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKALAYIKRQIKNPLSGIIFSR 916

Query: 921  KMMEGTYLDEEQKQLLHTSMHCQRQLHKVLDDTDLESIMDGYVDLEMVEFTLQDVLFTSI 742
            KMME T L EEQ+Q+LHTS  CQRQL K+LDD DL+SI++GY+DLEMVEFTL++VL  SI
Sbjct: 917  KMMEDTDLGEEQQQILHTSAQCQRQLSKILDDHDLDSIIEGYLDLEMVEFTLREVLVASI 976

Query: 741  SQVKIKSDGKSLRITYDSLEDIMTESLYGDSLRLQQVLADFMLVSVNFTPRGGQLGVSAS 562
            SQV IKS+GK ++I  D+ E IMTE+LYGD LRLQQVLADF+L+SVNFTP GGQL V+AS
Sbjct: 977  SQVMIKSNGKGIQIVNDAEEGIMTETLYGDGLRLQQVLADFLLISVNFTPGGGQLSVAAS 1036

Query: 561  LTRDRLGESVHLVHLELRLTHSGGGIPEELLGEMFENDSDTSEEGISLLVCRKLLRLMNG 382
            L +DRLGESVHLVHLELR+TH+G G+PE+LL +MF N+ D SEEGISLL+ RKL++LMNG
Sbjct: 1037 LIKDRLGESVHLVHLELRITHAGNGVPEQLLNQMFGNNGDASEEGISLLISRKLVKLMNG 1096

Query: 381  DVRYLREAGKSSFIISVELASAPK 310
            DV+YLREAGKS+FIIS+ELA+A K
Sbjct: 1097 DVQYLREAGKSTFIISIELAAARK 1120


>gb|ACC60969.1| phytochrome A [Vitis riparia]
          Length = 1124

 Score = 1838 bits (4761), Expect = 0.0
 Identities = 898/1104 (81%), Positives = 1002/1104 (90%)
 Frame = -3

Query: 3621 ARVIAQTSVDAKLHAEFEESGSSFDYXXXXXXXXXXXXXXNQQPRSDKVTTAYLHHIQKG 3442
            AR+IAQT+VDAKLHA+FEESGSSFDY               QQPRSDKVTTAYLHHIQKG
Sbjct: 20   ARIIAQTTVDAKLHADFEESGSSFDYSSSVRFTPAGGD---QQPRSDKVTTAYLHHIQKG 76

Query: 3441 KQIQPFGCLLALDEKTCRVIAYSENAPEMLTMVSHAVPSVGENPVLGIGTDLRTIFTSPS 3262
            K IQPFG LLALD+KT +VIAYSENAPEMLTMVSHAVPSVGE+PVLGIGTD+RTIF+ PS
Sbjct: 77   KLIQPFGSLLALDDKTFKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIFSGPS 136

Query: 3261 ASALQKALGFGDVSLLNPILVHCKSSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGA 3082
            ASAL KALGFG+VSLLNPILVHCK+SGKPFYAI+HRVTGSLIIDFEPVKPYEVPMTAAGA
Sbjct: 137  ASALHKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGA 196

Query: 3081 LQSYKLAAKAIARLQSLPSGNINRLCDTVVQEVFELTGYDRVMAYKFHDDDHGEVVSETT 2902
            LQSYKLAAKAI RLQSLPSG++ RLCDT+VQEVFELTGYDRVMAYKFHDDDHGEVVSE T
Sbjct: 197  LQSYKLAAKAITRLQSLPSGSLERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEIT 256

Query: 2901 KDGLPPYLGLHYPATDIPQAARFLFMKNKIRMICDCRAKHVRVLQDERLPFDLTLCGSTL 2722
            K GL PYLGLHYPATDIPQAARFLFMKNK+RMICDCRAKH++VLQDE+LPFDLTLCGSTL
Sbjct: 257  KPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHIQVLQDEKLPFDLTLCGSTL 316

Query: 2721 RAPHSCHLQYMENMDSIASLVMAVIINDGDEEDESAGPAQSQKRKRLWGLVVCHNTTPRF 2542
            RAPHSCH+QYMENM+SIASLVMAV++NDGDEE ES+   Q QKRKRLWGLVVCH+TTPRF
Sbjct: 317  RAPHSCHVQYMENMNSIASLVMAVVVNDGDEEGESSNSGQPQKRKRLWGLVVCHHTTPRF 376

Query: 2541 VPFPLRYACEFLIQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRNAPLGIVSQSPN 2362
            VPFPLRYACEFL QVFAIHVNKELELE+QILEKNILRTQTLLCDMLMR+APLGIVSQSPN
Sbjct: 377  VPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVSQSPN 436

Query: 2361 IMDLVKCDGAALLYKNKIWKLGLSPSELHIRDIASWLSEYHMDSTGLSTDSLYDAGFPGA 2182
            +MDLVKCDGAALLYKNK+W+LG++PS+  + DI SWLSEYHMDSTGLSTDSLYDAG+PGA
Sbjct: 437  VMDLVKCDGAALLYKNKVWRLGITPSDFQLHDICSWLSEYHMDSTGLSTDSLYDAGYPGA 496

Query: 2181 LSIGDTVCGMAAVRINDKDMLFWFRSHTAAEIQWGGAKHDPAEKDDGRKMHPRSSFKAFL 2002
            L++GD VCGMAAV+I  KD LFWFRSHTAAE++WGGAKH+P EKDDGRKMHPRSSFKAFL
Sbjct: 497  LALGDAVCGMAAVKITSKDTLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKAFL 556

Query: 2001 EVVKTRSTPWKDYEMDAIHSLQLILRNAFKDSETAGGNTTVIHSQLDNLKIDGMQELEAV 1822
            EVVKTRS PWKDYEMDAIHSLQLILRNAFKDSE    NT  IH++L++LKI+GMQELEAV
Sbjct: 557  EVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSEAMDVNTNAIHTKLNDLKIEGMQELEAV 616

Query: 1821 TNEMVRLIETATVPILAVDINGLINGWNTKIAELTGLPVDQVIGKHFLKLVEDSSVDTVR 1642
            T+EMVRLIETA+VPILAVD++GL+NGWNTKI+ELT LPVD+ IG H L LVEDSS DTV+
Sbjct: 617  TSEMVRLIETASVPILAVDVDGLVNGWNTKISELTSLPVDKAIGMHLLTLVEDSSADTVK 676

Query: 1641 KMLHLALLGKEEQNVHFEMKTHGSRKDSGPVSLVVNACASRDLQENVVGVCFVAQDITSQ 1462
            KMLHLAL G+EEQNV FE+KTHGS++DSGP+SLVVNACASRDL ENVVGVCFVAQDITSQ
Sbjct: 677  KMLHLALQGQEEQNVQFEIKTHGSKRDSGPISLVVNACASRDLDENVVGVCFVAQDITSQ 736

Query: 1461 KTVMDKFTRIEGDYKAILQNPSPLIPPIFGTDEFGWCCEWNPAMAKLSGWDRGEVMDKML 1282
            KTVMDKFTRIEGDYKAI+QNP+PLIPPIFGTDEFGWC EWNPAM KLSGW+R EVMDKML
Sbjct: 737  KTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMVKLSGWNREEVMDKML 796

Query: 1281 LGEIFGIHMACCRVKNQETFVNLGIVLNGAMMGEGTEKVSFGFFGRNGKYVDCLLSVCKK 1102
            LGE+FG HMACCR+KN+E FV LGIVLN  M G  +EKVSFGFF ++GKYV+CLLSV KK
Sbjct: 797  LGEVFGTHMACCRLKNREAFVGLGIVLNSVMTGRESEKVSFGFFSKSGKYVECLLSVSKK 856

Query: 1101 VDAEGVVTGVFCFLHTVSQELQQALHVQRLSEQTALKKSKTLAYMKRQIRNPLSGIIFSR 922
            +D EG VTGVFCFL   SQELQQALH+QRLSEQTALK+ K LAY+KRQI+NPLSGIIFSR
Sbjct: 857  LDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKALAYIKRQIKNPLSGIIFSR 916

Query: 921  KMMEGTYLDEEQKQLLHTSMHCQRQLHKVLDDTDLESIMDGYVDLEMVEFTLQDVLFTSI 742
            KMME T L EEQ+Q+LHTS  CQRQL K+LDD DL+SI++GY+DLEMVEFTL++VL  SI
Sbjct: 917  KMMEDTDLGEEQQQILHTSAQCQRQLSKILDDHDLDSIIEGYLDLEMVEFTLREVLVASI 976

Query: 741  SQVKIKSDGKSLRITYDSLEDIMTESLYGDSLRLQQVLADFMLVSVNFTPRGGQLGVSAS 562
            SQV IKS+GK ++I  D+ E IMTE+LYGD LRLQQVLADF+L+SVNFTP GGQL V+AS
Sbjct: 977  SQVMIKSNGKGIQIVNDAEEGIMTETLYGDGLRLQQVLADFLLISVNFTPGGGQLSVAAS 1036

Query: 561  LTRDRLGESVHLVHLELRLTHSGGGIPEELLGEMFENDSDTSEEGISLLVCRKLLRLMNG 382
            L +DRLGESVHLVHLELR+TH+G G+PE+LL +MF N+ D SEEGISLL+ RKL++LMNG
Sbjct: 1037 LIKDRLGESVHLVHLELRITHAGNGVPEQLLNQMFGNNGDASEEGISLLISRKLVKLMNG 1096

Query: 381  DVRYLREAGKSSFIISVELASAPK 310
            DV+YLREAGKS+FIIS+ELA+A K
Sbjct: 1097 DVQYLREAGKSTFIISIELAAARK 1120


>ref|XP_002512596.1| phytochrome A, putative [Ricinus communis]
            gi|223548557|gb|EEF50048.1| phytochrome A, putative
            [Ricinus communis]
          Length = 1124

 Score = 1795 bits (4649), Expect = 0.0
 Identities = 878/1104 (79%), Positives = 986/1104 (89%)
 Frame = -3

Query: 3621 ARVIAQTSVDAKLHAEFEESGSSFDYXXXXXXXXXXXXXXNQQPRSDKVTTAYLHHIQKG 3442
            AR+I+QT+VDAKLHA+FEESGSSFDY                 PRSDKVTTAYLHHIQKG
Sbjct: 20   ARIISQTAVDAKLHADFEESGSSFDYSNSVHVTSSTGLD--HAPRSDKVTTAYLHHIQKG 77

Query: 3441 KQIQPFGCLLALDEKTCRVIAYSENAPEMLTMVSHAVPSVGENPVLGIGTDLRTIFTSPS 3262
            K IQPFGCLLALDEKT +VIAYSENAPEMLTMVSHAVPSVG++PVLGIGTD+RTIFT+PS
Sbjct: 78   KLIQPFGCLLALDEKTYKVIAYSENAPEMLTMVSHAVPSVGDHPVLGIGTDIRTIFTAPS 137

Query: 3261 ASALQKALGFGDVSLLNPILVHCKSSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGA 3082
            ASALQKALGFGDVSLLNPILVHCK+SGKPFYAIVHRVTGS IIDFEPVKPYEVPMTAAGA
Sbjct: 138  ASALQKALGFGDVSLLNPILVHCKTSGKPFYAIVHRVTGSFIIDFEPVKPYEVPMTAAGA 197

Query: 3081 LQSYKLAAKAIARLQSLPSGNINRLCDTVVQEVFELTGYDRVMAYKFHDDDHGEVVSETT 2902
            LQSYKLAAKAI+RLQSLPSG++ RLCDT+VQEVFELTGYDRVM YKFHDDDHGEV+SE T
Sbjct: 198  LQSYKLAAKAISRLQSLPSGSMERLCDTMVQEVFELTGYDRVMTYKFHDDDHGEVISEVT 257

Query: 2901 KDGLPPYLGLHYPATDIPQAARFLFMKNKIRMICDCRAKHVRVLQDERLPFDLTLCGSTL 2722
            K GL PYLGLHYPATDIPQAARFLFMKNK+RMI DCRAKHV+VLQDE+LP +LTLCGSTL
Sbjct: 258  KPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVLQDEKLPLELTLCGSTL 317

Query: 2721 RAPHSCHLQYMENMDSIASLVMAVIINDGDEEDESAGPAQSQKRKRLWGLVVCHNTTPRF 2542
            RAPHSCHLQYMENMDS+ASLVMAV++N+GDE+D+S    Q QKRKRLWGLVVCHNTTPRF
Sbjct: 318  RAPHSCHLQYMENMDSVASLVMAVVVNEGDEDDDSPTSVQPQKRKRLWGLVVCHNTTPRF 377

Query: 2541 VPFPLRYACEFLIQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRNAPLGIVSQSPN 2362
            VPFPLRYACEFL QVFAIHVNKELELENQI+EKNILRTQTLLCDML+R+APLGI++QSPN
Sbjct: 378  VPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDMLLRDAPLGILTQSPN 437

Query: 2361 IMDLVKCDGAALLYKNKIWKLGLSPSELHIRDIASWLSEYHMDSTGLSTDSLYDAGFPGA 2182
            I DLVKCDGAALLYKNKIW+LG++PS+L IRDIA WLSEYHMDSTGLSTDSLYDAG+  A
Sbjct: 438  ITDLVKCDGAALLYKNKIWRLGVTPSDLQIRDIAVWLSEYHMDSTGLSTDSLYDAGYSAA 497

Query: 2181 LSIGDTVCGMAAVRINDKDMLFWFRSHTAAEIQWGGAKHDPAEKDDGRKMHPRSSFKAFL 2002
            LS+ D VCGMAAVRI  KDMLFWFR+ TAAEI+WGGAKH+P EKDDGRKMHPRSSFKAFL
Sbjct: 498  LSLEDVVCGMAAVRITSKDMLFWFRAPTAAEIRWGGAKHEPGEKDDGRKMHPRSSFKAFL 557

Query: 2001 EVVKTRSTPWKDYEMDAIHSLQLILRNAFKDSETAGGNTTVIHSQLDNLKIDGMQELEAV 1822
            EVVKTRS PWKDYEMDAIHSLQLILRNAFKD+ET   +   IHS+L +LKI+GMQELEAV
Sbjct: 558  EVVKTRSLPWKDYEMDAIHSLQLILRNAFKDAETMDADAKAIHSRLSDLKIEGMQELEAV 617

Query: 1821 TNEMVRLIETATVPILAVDINGLINGWNTKIAELTGLPVDQVIGKHFLKLVEDSSVDTVR 1642
            T+EMVRLIETATVPILAVD++GL+NGWNTKIAELTGLPVD+ IGKH L LVED S+D V+
Sbjct: 618  TSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLPVDKAIGKHLLTLVEDGSIDLVK 677

Query: 1641 KMLHLALLGKEEQNVHFEMKTHGSRKDSGPVSLVVNACASRDLQENVVGVCFVAQDITSQ 1462
             ML  AL GKEEQN+ FE+KTHGS+ +SGP+SLVVNACASRD+ ENVVGVCFVAQDIT Q
Sbjct: 678  NMLFSALQGKEEQNIQFEIKTHGSKVESGPISLVVNACASRDISENVVGVCFVAQDITGQ 737

Query: 1461 KTVMDKFTRIEGDYKAILQNPSPLIPPIFGTDEFGWCCEWNPAMAKLSGWDRGEVMDKML 1282
            KTVMDKFTRIEGDYKAI+QNP+PLIPPIFGTDEFGWC EWNPAMAKL+GW R EVMDKML
Sbjct: 738  KTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMAKLTGWKREEVMDKML 797

Query: 1281 LGEIFGIHMACCRVKNQETFVNLGIVLNGAMMGEGTEKVSFGFFGRNGKYVDCLLSVCKK 1102
            LGE+FGI+ ACC +KNQE FVNLG+++N AM  +  EKVSF FF RN KYV+CLL V KK
Sbjct: 798  LGEVFGINRACCCLKNQEAFVNLGVLINNAMTSQVPEKVSFSFFARNKKYVECLLCVSKK 857

Query: 1101 VDAEGVVTGVFCFLHTVSQELQQALHVQRLSEQTALKKSKTLAYMKRQIRNPLSGIIFSR 922
            +D EG VTGVFCFL   SQELQQALH+QRLSEQTALK+ KTLAY+KRQI+NPLSGI+FSR
Sbjct: 858  LDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKTLAYIKRQIQNPLSGIMFSR 917

Query: 921  KMMEGTYLDEEQKQLLHTSMHCQRQLHKVLDDTDLESIMDGYVDLEMVEFTLQDVLFTSI 742
            K+ME T LD EQKQLLHTS  CQRQL K+LDD+D++SI++GY+DLEMVEFTL +VL  +I
Sbjct: 918  KLMEITELDAEQKQLLHTSAQCQRQLSKILDDSDIDSIVEGYLDLEMVEFTLHEVLIAAI 977

Query: 741  SQVKIKSDGKSLRITYDSLEDIMTESLYGDSLRLQQVLADFMLVSVNFTPRGGQLGVSAS 562
            SQV IKS GK +RI  D+ E IMTE+LYGDS+RLQQVLADF+  SV+FTP GGQL ++A 
Sbjct: 978  SQVTIKSKGKGIRIVNDAAEVIMTETLYGDSIRLQQVLADFLAASVDFTPPGGQLTIAAK 1037

Query: 561  LTRDRLGESVHLVHLELRLTHSGGGIPEELLGEMFENDSDTSEEGISLLVCRKLLRLMNG 382
             T+D+LG+SVHLVHLELR+TH+GGGIPE LL +MF +D D S+EG+SL + RKL++LMNG
Sbjct: 1038 FTKDQLGQSVHLVHLELRITHAGGGIPEPLLNQMFGSDGDVSDEGVSLFISRKLVKLMNG 1097

Query: 381  DVRYLREAGKSSFIISVELASAPK 310
            DV+YLREAGKSSFI++VELA+  K
Sbjct: 1098 DVQYLREAGKSSFIVTVELAAGRK 1121


>ref|XP_002318913.1| phytochrome [Populus trichocarpa] gi|222857289|gb|EEE94836.1|
            phytochrome [Populus trichocarpa]
          Length = 1126

 Score = 1778 bits (4605), Expect = 0.0
 Identities = 873/1104 (79%), Positives = 979/1104 (88%)
 Frame = -3

Query: 3621 ARVIAQTSVDAKLHAEFEESGSSFDYXXXXXXXXXXXXXXNQQPRSDKVTTAYLHHIQKG 3442
            AR+IAQT+VDAKLHA+FEESGSSFDY               Q PRSDKVTT YLHHIQKG
Sbjct: 20   ARIIAQTTVDAKLHADFEESGSSFDYSSSVRVTDSVGGD--QPPRSDKVTTTYLHHIQKG 77

Query: 3441 KQIQPFGCLLALDEKTCRVIAYSENAPEMLTMVSHAVPSVGENPVLGIGTDLRTIFTSPS 3262
            K IQPFGCLLALDEKT +V+AYSENAPE+LTMVSHAVPSVGE+PVLGIGTD+RTIFT+PS
Sbjct: 78   KLIQPFGCLLALDEKTFKVVAYSENAPELLTMVSHAVPSVGEHPVLGIGTDIRTIFTAPS 137

Query: 3261 ASALQKALGFGDVSLLNPILVHCKSSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGA 3082
            ASALQKA+GFGDVSLLNPILVHCK+SGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGA
Sbjct: 138  ASALQKAMGFGDVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGA 197

Query: 3081 LQSYKLAAKAIARLQSLPSGNINRLCDTVVQEVFELTGYDRVMAYKFHDDDHGEVVSETT 2902
            LQSYKLAAKAI RLQSLPSG++ RLCDT+VQEVFELTGYDR MAYKFHDDDHGEVVSE T
Sbjct: 198  LQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRAMAYKFHDDDHGEVVSEVT 257

Query: 2901 KDGLPPYLGLHYPATDIPQAARFLFMKNKIRMICDCRAKHVRVLQDERLPFDLTLCGSTL 2722
            K G+ PYLGLHYPATDIPQA+RFLFMKNK+RMI DC AKHV+VLQDE+LPFDLTLCGSTL
Sbjct: 258  KPGMEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTL 317

Query: 2721 RAPHSCHLQYMENMDSIASLVMAVIINDGDEEDESAGPAQSQKRKRLWGLVVCHNTTPRF 2542
            RAPHSCHLQYMENM+SIASLVMAV++NDGDE+ ++      QKRKRLWGLVVCHNT+PRF
Sbjct: 318  RAPHSCHLQYMENMNSIASLVMAVVVNDGDEDGDTPDSVNPQKRKRLWGLVVCHNTSPRF 377

Query: 2541 VPFPLRYACEFLIQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRNAPLGIVSQSPN 2362
            VPFPLRYACEFL QVFAIHVNKELELENQI+EKNILRTQTLLCDMLMR+APLGIV+QSPN
Sbjct: 378  VPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSPN 437

Query: 2361 IMDLVKCDGAALLYKNKIWKLGLSPSELHIRDIASWLSEYHMDSTGLSTDSLYDAGFPGA 2182
            IMDLVKCDGA L Y+NKIW+LG++PS+L ++DIA WLSEYHMDSTGLSTDSLYDAG+PGA
Sbjct: 438  IMDLVKCDGAVLFYRNKIWRLGITPSDLQLQDIAFWLSEYHMDSTGLSTDSLYDAGYPGA 497

Query: 2181 LSIGDTVCGMAAVRINDKDMLFWFRSHTAAEIQWGGAKHDPAEKDDGRKMHPRSSFKAFL 2002
            L++GD VCGMAAVRI  KDMLFWFRS TAAEI+WGGAKH+P EKDDGR+MHPRSSFKAFL
Sbjct: 498  LALGDVVCGMAAVRITSKDMLFWFRSQTAAEIRWGGAKHEPGEKDDGRRMHPRSSFKAFL 557

Query: 2001 EVVKTRSTPWKDYEMDAIHSLQLILRNAFKDSETAGGNTTVIHSQLDNLKIDGMQELEAV 1822
            EVVKTRS PWKDYEMDAIHSLQLILRNAFKD ET   +T  IH++L +LKI+GMQELEAV
Sbjct: 558  EVVKTRSLPWKDYEMDAIHSLQLILRNAFKDIETMDVDTKTIHARLSDLKIEGMQELEAV 617

Query: 1821 TNEMVRLIETATVPILAVDINGLINGWNTKIAELTGLPVDQVIGKHFLKLVEDSSVDTVR 1642
            T+EMVRLIETATVPILAVD++GL+NGWNTKI+ELTGL VD+ IGKH L LVEDSSVD V+
Sbjct: 618  TSEMVRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAIGKHLLTLVEDSSVDIVK 677

Query: 1641 KMLHLALLGKEEQNVHFEMKTHGSRKDSGPVSLVVNACASRDLQENVVGVCFVAQDITSQ 1462
            +ML LAL GKEEQN+ FE+KTHGS+ + GP+ LVVNACASRDL ENVVGVCFV QDIT Q
Sbjct: 678  RMLFLALQGKEEQNIQFEIKTHGSKSECGPICLVVNACASRDLHENVVGVCFVGQDITGQ 737

Query: 1461 KTVMDKFTRIEGDYKAILQNPSPLIPPIFGTDEFGWCCEWNPAMAKLSGWDRGEVMDKML 1282
            K VMDKFTRIEGDYKAI+QN +PLIPPIFGTDEFGWC EWNPAM  L+GW R EV+DKML
Sbjct: 738  KMVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCSEWNPAMTNLTGWKREEVLDKML 797

Query: 1281 LGEIFGIHMACCRVKNQETFVNLGIVLNGAMMGEGTEKVSFGFFGRNGKYVDCLLSVCKK 1102
            LGE+FG++MACCR+KNQE FVNLG+VLN AM G+ +EKVSFGFF R GKYV+CLL V KK
Sbjct: 798  LGEVFGLNMACCRLKNQEAFVNLGVVLNTAMTGQESEKVSFGFFARTGKYVECLLCVSKK 857

Query: 1101 VDAEGVVTGVFCFLHTVSQELQQALHVQRLSEQTALKKSKTLAYMKRQIRNPLSGIIFSR 922
            +D EG VTGVFCFL   SQELQQALHVQRLSEQTALK+ K LAY+KRQI NPLSGIIFS 
Sbjct: 858  LDREGAVTGVFCFLQLASQELQQALHVQRLSEQTALKRLKALAYLKRQIWNPLSGIIFSG 917

Query: 921  KMMEGTYLDEEQKQLLHTSMHCQRQLHKVLDDTDLESIMDGYVDLEMVEFTLQDVLFTSI 742
            KMMEGT L  EQK+LLHTS  CQ QL K+LDD+DL+SI++GY+DLEMVEFTL++VL  + 
Sbjct: 918  KMMEGTELGAEQKELLHTSAQCQCQLSKILDDSDLDSIIEGYLDLEMVEFTLREVLVAAT 977

Query: 741  SQVKIKSDGKSLRITYDSLEDIMTESLYGDSLRLQQVLADFMLVSVNFTPRGGQLGVSAS 562
            SQV +KS+ K +RI  D+ E+ M E+LYGDS+RLQQVLADF+ +SVNFTP GG L VSAS
Sbjct: 978  SQVMMKSNEKGIRIINDAAEETMAETLYGDSIRLQQVLADFLQMSVNFTPSGGLLSVSAS 1037

Query: 561  LTRDRLGESVHLVHLELRLTHSGGGIPEELLGEMFENDSDTSEEGISLLVCRKLLRLMNG 382
            LT+D+LG+SV+LVHLELR+ H G GIPE LL +MF  D+D S EGISL++ RKL++LMNG
Sbjct: 1038 LTKDQLGQSVYLVHLELRIRHPGAGIPEALLDQMFGEDTDASVEGISLVISRKLVKLMNG 1097

Query: 381  DVRYLREAGKSSFIISVELASAPK 310
            DVRY+REAGKSSFIISVELA   K
Sbjct: 1098 DVRYMREAGKSSFIISVELAGGHK 1121