BLASTX nr result
ID: Cimicifuga21_contig00002211
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00002211
(4474 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273908.2| PREDICTED: DEAD-box ATP-dependent RNA helica... 737 0.0
ref|XP_003633801.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 712 0.0
ref|XP_004164821.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 693 0.0
ref|XP_004141097.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP... 693 0.0
ref|XP_002300045.1| predicted protein [Populus trichocarpa] gi|2... 693 0.0
>ref|XP_002273908.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform 1
[Vitis vinifera]
Length = 863
Score = 737 bits (1903), Expect = 0.0
Identities = 407/665 (61%), Positives = 467/665 (70%), Gaps = 11/665 (1%)
Frame = +2
Query: 2513 SSSKPRGSD-VGSGISSESYCRQHEITVNGDDVPSPFMSFESTGFPLEILREVQNAGFSA 2689
SS + +GS GSG S+ESY R+HEITV GDDVP PF SFESTGFP EI+REV +AGFSA
Sbjct: 126 SSVRGQGSSGPGSGASTESYRRRHEITVTGDDVPQPFTSFESTGFPPEIIREVYSAGFSA 185
Query: 2690 PTPIQAQTWPVALQSRDIVAVAKTGSGKTLGYLIPGFIHLKRCRNNSQLGPTVLVLSPTR 2869
PTPIQAQ+WPVALQSRDIVA+AKTGSGKTLGYLIPGFIHLKR RNN Q+GPTVLVLSPTR
Sbjct: 186 PTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQMGPTVLVLSPTR 245
Query: 2870 ELATQIQAEAVKFSKSSRIACTCLYGGAPKGPQLRDIERGADIVVATPGRLNDILEMRKI 3049
ELATQIQ EAVKF +SSR++CTCLYGGAPKGPQLRD++RGADIVVATPGRLNDILEMR++
Sbjct: 246 ELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRGADIVVATPGRLNDILEMRRV 305
Query: 3050 SLRQVSYLVLDEADRMLDMGFEPQIRKIVQEIPPRRQTLMYTATWPKEVRKIAADLLVNP 3229
SLRQVSYLVLDEADRMLDMGFEPQIRKIV+E+P RRQTLMYTATWPKEVRKIAADLLVNP
Sbjct: 306 SLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAADLLVNP 365
Query: 3230 VQVNIGSIDELVANKSITQYIEIVTPMEKNRRLEQILRSQEPGSKVIVFCSTKKMCDQLT 3409
VQVNIG++DELVANK+ITQY+E++ MEK++RLEQILRSQEPGSK+I+FCSTKKMCDQL
Sbjct: 366 VQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSKIIIFCSTKKMCDQLA 425
Query: 3410 RTITRQFGAAAIHGDKSQGERDYVLNQFRSGKSPILVATDVAARGLDIKDIRIVINYDFP 3589
R +TR FGAAAIHGDKSQGERDYVLNQFR+G+SP+LVATDVAARGLDIKDIR+VINYDFP
Sbjct: 426 RNLTRPFGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLDIKDIRVVINYDFP 485
Query: 3590 TGIEDYVHRIXXXXXXXXXXLAYTFFCEQDAKYASDLIKVLEGANQRVPPQIRDMASR-G 3766
TG+EDYVHRI +AYTFF EQDAKYASDL+KVLEGANQRVPP+IRDMASR G
Sbjct: 486 TGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLEGANQRVPPEIRDMASRGG 545
Query: 3767 GMGRARSKW-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHDV 3931
GMGR+R +W D
Sbjct: 546 GMGRSR-RWGSGTGGRDGGRGGRNDSSYGGRDGGRGGWGMAPSSSSRLERGGGRGADQDQ 604
Query: 3932 EPRDRYGRGYHDGPNEDLHDRYQKGNPANDIDHRIGDRDRVRGR----SPIKGGGWGHPG 4099
RDRY YHDG + D RY +G A+ I R G+RDR R R SP KG +G
Sbjct: 605 RDRDRYDHSYHDGHDFDTRSRYDRGYHASSI--RAGERDRARSRSRSQSPNKGQAYGD-- 660
Query: 4100 TXXXXXXXXXXXXXXXXXGPEKPIRRHSPVPKRNSSPNLHRSMDLGRSPPPAQPRVPLYR 4279
S R+ S + RS++ PP + R P++
Sbjct: 661 -------------------------ARSRSRSRSKSRSRSRSLERYNKAPPVRERSPVHS 695
Query: 4280 KEKSPGPFYRKEKSPGPLYRKEKSPGPLYRREKSPGPLYRREKSPGPLYRKEKSPGPLYR 4459
KS + +SP Y + + RE+SP R + +K +S P R
Sbjct: 696 FHKSA---MEQARSPHGRYVSPYNNDNV--RERSP----MRSFHKSAMEQKPQSSPPPQR 746
Query: 4460 KEKSP 4474
+ SP
Sbjct: 747 QRVSP 751
>ref|XP_003633801.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform 2
[Vitis vinifera]
Length = 828
Score = 712 bits (1839), Expect = 0.0
Identities = 355/429 (82%), Positives = 394/429 (91%), Gaps = 2/429 (0%)
Frame = +2
Query: 2513 SSSKPRGSD-VGSGISSESYCRQHEITVNGDDVPSPFMSFESTGFPLEILREVQNAGFSA 2689
SS + +GS GSG S+ESY R+HEITV GDDVP PF SFESTGFP EI+REV +AGFSA
Sbjct: 126 SSVRGQGSSGPGSGASTESYRRRHEITVTGDDVPQPFTSFESTGFPPEIIREVYSAGFSA 185
Query: 2690 PTPIQAQTWPVALQSRDIVAVAKTGSGKTLGYLIPGFIHLKRCRNNSQLGPTVLVLSPTR 2869
PTPIQAQ+WPVALQSRDIVA+AKTGSGKTLGYLIPGFIHLKR RNN Q+GPTVLVLSPTR
Sbjct: 186 PTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQMGPTVLVLSPTR 245
Query: 2870 ELATQIQAEAVKFSKSSRIACTCLYGGAPKGPQLRDIERGADIVVATPGRLNDILEMRKI 3049
ELATQIQ EAVKF +SSR++CTCLYGGAPKGPQLRD++RGADIVVATPGRLNDILEMR++
Sbjct: 246 ELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRGADIVVATPGRLNDILEMRRV 305
Query: 3050 SLRQVSYLVLDEADRMLDMGFEPQIRKIVQEIPPRRQTLMYTATWPKEVRKIAADLLVNP 3229
SLRQVSYLVLDEADRMLDMGFEPQIRKIV+E+P RRQTLMYTATWPKEVRKIAADLLVNP
Sbjct: 306 SLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAADLLVNP 365
Query: 3230 VQVNIGSIDELVANKSITQYIEIVTPMEKNRRLEQILRSQEPGSKVIVFCSTKKMCDQLT 3409
VQVNIG++DELVANK+ITQY+E++ MEK++RLEQILRSQEPGSK+I+FCSTKKMCDQL
Sbjct: 366 VQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSKIIIFCSTKKMCDQLA 425
Query: 3410 RTITRQFGAAAIHGDKSQGERDYVLNQFRSGKSPILVATDVAARGLDIKDIRIVINYDFP 3589
R +TR FGAAAIHGDKSQGERDYVLNQFR+G+SP+LVATDVAARGLDIKDIR+VINYDFP
Sbjct: 426 RNLTRPFGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLDIKDIRVVINYDFP 485
Query: 3590 TGIEDYVHRIXXXXXXXXXXLAYTFFCEQDAKYASDLIKVLEGANQRVPPQIRDMASR-G 3766
TG+EDYVHRI +AYTFF EQDAKYASDL+KVLEGANQRVPP+IRDMASR G
Sbjct: 486 TGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLEGANQRVPPEIRDMASRGG 545
Query: 3767 GMGRARSKW 3793
GMGR+R +W
Sbjct: 546 GMGRSR-RW 553
>ref|XP_004164821.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like [Cucumis
sativus]
Length = 778
Score = 693 bits (1789), Expect = 0.0
Identities = 344/423 (81%), Positives = 386/423 (91%), Gaps = 1/423 (0%)
Frame = +2
Query: 2528 RGSDVGSGISSESYCRQHEITVNGDDVPSPFMSFESTGFPLEILREVQNAGFSAPTPIQA 2707
R SD G+GIS+ESY ++HEIT +GD+VP+PF SFE+TGFP EILREV NAGFSAPTPIQA
Sbjct: 130 RPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREVHNAGFSAPTPIQA 189
Query: 2708 QTWPVALQSRDIVAVAKTGSGKTLGYLIPGFIHLKRCRNNSQLGPTVLVLSPTRELATQI 2887
Q+WP+ALQSRDIVA+AKTGSGKTLGYLIPGFIHLKR RN+ +LGPTVLVLSPTRELATQI
Sbjct: 190 QSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNDPKLGPTVLVLSPTRELATQI 249
Query: 2888 QAEAVKFSKSSRIACTCLYGGAPKGPQLRDIERGADIVVATPGRLNDILEMRKISLRQVS 3067
Q EAVKF KSSRI+C CLYGGAPKG QLRDI+RG DIVVATPGRLNDILEMR+ISL QVS
Sbjct: 250 QDEAVKFGKSSRISCACLYGGAPKGLQLRDIDRGVDIVVATPGRLNDILEMRRISLHQVS 309
Query: 3068 YLVLDEADRMLDMGFEPQIRKIVQEIPPRRQTLMYTATWPKEVRKIAADLLVNPVQVNIG 3247
YLVLDEADRMLDMGFEPQIRKIV+E+P RRQTLMYTATWPKEVRKIA+DLLVNP+QVNIG
Sbjct: 310 YLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIASDLLVNPIQVNIG 369
Query: 3248 SIDELVANKSITQYIEIVTPMEKNRRLEQILRSQEPGSKVIVFCSTKKMCDQLTRTITRQ 3427
++DELVANKSITQ+IE + P+EK+RRLEQILRSQEPGSKVI+FCSTKKMCDQL R +TRQ
Sbjct: 370 NVDELVANKSITQHIEALAPLEKHRRLEQILRSQEPGSKVIIFCSTKKMCDQLARNLTRQ 429
Query: 3428 FGAAAIHGDKSQGERDYVLNQFRSGKSPILVATDVAARGLDIKDIRIVINYDFPTGIEDY 3607
FGAAAIHGDKSQGERD+VL QFR+G++P+LVATDVAARGLDIKDIR+VINYDFP+G+EDY
Sbjct: 430 FGAAAIHGDKSQGERDHVLGQFRTGRTPVLVATDVAARGLDIKDIRVVINYDFPSGVEDY 489
Query: 3608 VHRIXXXXXXXXXXLAYTFFCEQDAKYASDLIKVLEGANQRVPPQIRDMASRG-GMGRAR 3784
VHRI +AYTFF EQDAKYASDLIK+LEGANQRVPP++RDMASR GM + R
Sbjct: 490 VHRIGRTGRAGATGIAYTFFGEQDAKYASDLIKILEGANQRVPPELRDMASRSYGMAKFR 549
Query: 3785 SKW 3793
+W
Sbjct: 550 -RW 551
>ref|XP_004141097.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
46-like [Cucumis sativus]
Length = 785
Score = 693 bits (1789), Expect = 0.0
Identities = 344/423 (81%), Positives = 386/423 (91%), Gaps = 1/423 (0%)
Frame = +2
Query: 2528 RGSDVGSGISSESYCRQHEITVNGDDVPSPFMSFESTGFPLEILREVQNAGFSAPTPIQA 2707
R SD G+GIS+ESY ++HEIT +GD+VP+PF SFE+TGFP EILREV NAGFSAPTPIQA
Sbjct: 137 RPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREVHNAGFSAPTPIQA 196
Query: 2708 QTWPVALQSRDIVAVAKTGSGKTLGYLIPGFIHLKRCRNNSQLGPTVLVLSPTRELATQI 2887
Q+WP+ALQSRDIVA+AKTGSGKTLGYLIPGFIHLKR RN+ +LGPTVLVLSPTRELATQI
Sbjct: 197 QSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNDPKLGPTVLVLSPTRELATQI 256
Query: 2888 QAEAVKFSKSSRIACTCLYGGAPKGPQLRDIERGADIVVATPGRLNDILEMRKISLRQVS 3067
Q EAVKF KSSRI+C CLYGGAPKG QLRDI+RG DIVVATPGRLNDILEMR+ISL QVS
Sbjct: 257 QDEAVKFGKSSRISCACLYGGAPKGLQLRDIDRGVDIVVATPGRLNDILEMRRISLHQVS 316
Query: 3068 YLVLDEADRMLDMGFEPQIRKIVQEIPPRRQTLMYTATWPKEVRKIAADLLVNPVQVNIG 3247
YLVLDEADRMLDMGFEPQIRKIV+E+P RRQTLMYTATWPKEVRKIA+DLLVNP+QVNIG
Sbjct: 317 YLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIASDLLVNPIQVNIG 376
Query: 3248 SIDELVANKSITQYIEIVTPMEKNRRLEQILRSQEPGSKVIVFCSTKKMCDQLTRTITRQ 3427
++DELVANKSITQ+IE + P+EK+RRLEQILRSQEPGSKVI+FCSTKKMCDQL R +TRQ
Sbjct: 377 NVDELVANKSITQHIEALAPLEKHRRLEQILRSQEPGSKVIIFCSTKKMCDQLARNLTRQ 436
Query: 3428 FGAAAIHGDKSQGERDYVLNQFRSGKSPILVATDVAARGLDIKDIRIVINYDFPTGIEDY 3607
FGAAAIHGDKSQGERD+VL QFR+G++P+LVATDVAARGLDIKDIR+VINYDFP+G+EDY
Sbjct: 437 FGAAAIHGDKSQGERDHVLGQFRTGRTPVLVATDVAARGLDIKDIRVVINYDFPSGVEDY 496
Query: 3608 VHRIXXXXXXXXXXLAYTFFCEQDAKYASDLIKVLEGANQRVPPQIRDMASRG-GMGRAR 3784
VHRI +AYTFF EQDAKYASDLIK+LEGANQRVPP++RDMASR GM + R
Sbjct: 497 VHRIGRTGRAGATGIAYTFFGEQDAKYASDLIKILEGANQRVPPELRDMASRSYGMAKFR 556
Query: 3785 SKW 3793
+W
Sbjct: 557 -RW 558
>ref|XP_002300045.1| predicted protein [Populus trichocarpa] gi|222847303|gb|EEE84850.1|
predicted protein [Populus trichocarpa]
Length = 791
Score = 693 bits (1788), Expect = 0.0
Identities = 386/661 (58%), Positives = 451/661 (68%), Gaps = 26/661 (3%)
Frame = +2
Query: 2516 SSKPRGSDVG-SGISSESYCRQHEITVNGDDVPSPFMSFESTGFPLEILREVQNAGFSAP 2692
S++ GS G SG+S E+Y R+HEITV GD+VP P SFE+TGFP EIL+EV NAGFSAP
Sbjct: 129 SARVYGSSAGGSGMSGEAYRRRHEITVTGDEVPPPLTSFETTGFPSEILKEVLNAGFSAP 188
Query: 2693 TPIQAQTWPVALQSRDIVAVAKTGSGKTLGYLIPGFIHLKRCRNNSQLGPTVLVLSPTRE 2872
TPIQAQ+WP+ALQSRDIVAVAKTGSGKTLGYLIPGFIHLKR N+ +LGPTVLVLSPTRE
Sbjct: 189 TPIQAQSWPIALQSRDIVAVAKTGSGKTLGYLIPGFIHLKRSCNDPRLGPTVLVLSPTRE 248
Query: 2873 LATQIQAEAVKFSKSSRIACTCLYGGAPKGPQLRDIERGADIVVATPGRLNDILEMRKIS 3052
LATQIQ EAVKF KSSR +CTCLYGGAPKGPQL++++RGADIVVATPGRLNDILEMR++S
Sbjct: 249 LATQIQVEAVKFGKSSRFSCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMRRVS 308
Query: 3053 LRQVSYLVLDEADRMLDMGFEPQIRKIVQEIPPRRQTLMYTATWPKEVRKIAADLLVNPV 3232
L QVSYLVLDEADRMLDMGFEPQIRKIV+E+P RRQTLMYTATWPKEVRKIAADLLVNPV
Sbjct: 309 LSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAADLLVNPV 368
Query: 3233 QVNIGSIDELVANKSITQYIEIVTPMEKNRRLEQILRSQEPGSKVIVFCSTKKMCDQLTR 3412
QVNIG++DELVANKSITQY+E++ P+EK+RRLEQILRSQE GSK+I+FCSTKKMCDQL+R
Sbjct: 369 QVNIGNVDELVANKSITQYVELLAPLEKHRRLEQILRSQESGSKIIIFCSTKKMCDQLSR 428
Query: 3413 TITRQFGAAAIHGDKSQGERDYVLNQFRSGKSPILVATDVAARGLDIKDIRIVINYDFPT 3592
+TRQFGAAAIHGDKSQ ERDYVL+QFR+G+SPILVATDVAARGLDIKDIR+VINYDFPT
Sbjct: 429 NLTRQFGAAAIHGDKSQSERDYVLSQFRTGRSPILVATDVAARGLDIKDIRVVINYDFPT 488
Query: 3593 GIEDYVHRIXXXXXXXXXXLAYTFFCEQDAKYASDLIKVLEGANQRVPPQIRDMASRGGM 3772
G+EDYVHRI +AYTFF +QDAK+ASDLIKVLEGANQ+VPP+IRDMASRGG
Sbjct: 489 GVEDYVHRIGRTGRAGATGVAYTFFGDQDAKHASDLIKVLEGANQQVPPEIRDMASRGGG 548
Query: 3773 GRARSKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHDVEPRDRYG 3952
G R + H+ Y
Sbjct: 549 GMGRFRRWGSGGHDGGRGGRSDFGYGGRGSWGMSNSSSSRPERGGGRGNDHE------YD 602
Query: 3953 RGYHDGPNEDLHDRYQKGNPANDIDHRIGDRDRVRGRSPIKGGGWGHPGTXXXXXXXXXX 4132
RGY DG HD+ N RSP KG GWG
Sbjct: 603 RGYGDG-----HDKGHNHN-----------------RSPDKGSGWGDRSKSWNHDKSHSR 640
Query: 4133 XXXXXXXGPEKPIRR---------HSPVP-----KRNSSP-------NLHRS-MDLGRSP 4246
P P+R + +P +R+ SP + H++ M+ GR+
Sbjct: 641 SPDRHDRAP--PVRSFHQAMMEKGRASIPVQIQHERSRSPSAGGGGSSFHKAIMERGRAS 698
Query: 4247 PPAQPRVPLYRKEKSPGPFYRKEKSPGPLYRKEKSPGPLY---RREKSPGPLYRREKSPG 4417
PP Q +E+S P++ S ++ P + R +SP + R + G
Sbjct: 699 PPRQ-----VHRERSRSPYHGSGGSFHKEMIEQSRPSSYHAQQERGRSPSSGHDRGFNAG 753
Query: 4418 P 4420
P
Sbjct: 754 P 754