BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00002149
         (2206 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232...   296   2e-77
gb|AEV43360.1| RNA recognition motif protein 1 [Citrus sinensis]      293   1e-76
ref|XP_002526479.1| RNA binding protein, putative [Ricinus commu...   290   1e-75
gb|AAN77868.1| putative heterogeneous nuclear ribonucleoprotein ...   289   2e-75
ref|NP_001053453.1| Os04g0543200 [Oryza sativa Japonica Group] g...   288   3e-75

>ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232913 [Vitis vinifera]
            gi|297734640|emb|CBI16691.3| unnamed protein product
            [Vitis vinifera]
          Length = 812

 Score =  296 bits (758), Expect = 2e-77
 Identities = 140/289 (48%), Positives = 221/289 (76%), Gaps = 3/289 (1%)
 Frame = +2

Query: 284  KDKKKQTGVEIFVGGLNRKAVEEDLIKVFGELGEIKAVRIVKHPVTKRSKGYAFISYATV 463
            K+++K+   E+FVGGL++ A E+DL KVF ++GE+  VR++ +P TK++KG+AF+ +ATV
Sbjct: 224  KERRKRKEFEVFVGGLDKDATEDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 283

Query: 464  EQAQKVLADLKDGIEVKGKRAGVSPSQDSDTLYMGNISKSWTKEQVLETLKGFGIENFEE 643
            EQA++ + +LK+ + V GK+ GV+PSQDSDTL++GNI K+WTKE + E LK +G+EN E+
Sbjct: 284  EQAKRAVTELKNPV-VNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVED 342

Query: 644  IYIPEDPKGEGKIRGFAYLEFLTHSDAMTAFQRLRKPDAVFGRNRSAKVAFAPS-MHPSE 820
            + + ED   EG  RGFA+LEF + SDAM AF+RL+K D VFG +R+AKV+FA S + P +
Sbjct: 343  LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRTAKVSFADSFIDPGD 402

Query: 821  EALSQVKTVYVEGLTDSWGEEKLKQLCEQYGEVEKIQLSRDLVTVKRKDFGFVSFTSREN 1000
            E ++QVKTV+++GL  SW E+++++L ++YGE+EKI+L+R++ + KRKDFGFV+F + + 
Sbjct: 403  EIMAQVKTVFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDA 462

Query: 1001 ALACVAAINNAQIGEGE--VKIKANIAKPQYKGRLGKNARGGYKVQKDG 1141
            A+ C  +INNA++GEGE   K++A +++P  +G+    +RG ++  + G
Sbjct: 463  AVTCAKSINNAELGEGENKAKVRARLSRPLQRGKGKHISRGDFRPGRGG 511


>gb|AEV43360.1| RNA recognition motif protein 1 [Citrus sinensis]
          Length = 775

 Score =  293 bits (751), Expect = 1e-76
 Identities = 180/499 (36%), Positives = 279/499 (55%), Gaps = 21/499 (4%)
 Frame = +2

Query: 284  KDKKKQTGVEIFVGGLNRKAVEEDLIKVFGELGEIKAVRIVKHPVTKRSKGYAFISYATV 463
            ++++K+   E+FVGGL++  V +DL KVF ++GE+  VR++ +P TK++KG+AF+ +ATV
Sbjct: 189  QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 248

Query: 464  EQAQKVLADLKDGIEVKGKRAGVSPSQDSDTLYMGNISKSWTKEQVLETLKGFGIENFEE 643
            EQA++ + +LK+ + + GK+ GV+PSQDSDTL++GNI K+WTKE + E LK +G++N E+
Sbjct: 249  EQARQAVTELKNPV-INGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307

Query: 644  IYIPEDPKGEGKIRGFAYLEFLTHSDAMTAFQRLRKPDAVFGRNRSAKVAFAPS-MHPSE 820
            + + ED   EG  RGFA+LEF + SDAM AF+RL+K D +FG +R AKV+FA S + P +
Sbjct: 308  LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367

Query: 821  EALSQVKTVYVEGLTDSWGEEKLKQLCEQYGEVEKIQLSRDLVTVKRKDFGFVSFTSREN 1000
            E ++QVKTV+V+GL  SW E+++++L + YGE+ KI+L+R++ + KRKDFGFV+F + + 
Sbjct: 368  EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427

Query: 1001 ALACVAAINNAQIGEGE--VKIKANIAKPQYKGRLGKNARGGYKVQKDGEKVXXXXXXXX 1174
            A+ C  +INNA++GEG+   K++A +++P  +G+    +RG ++  +   +         
Sbjct: 428  AVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRA-------- 479

Query: 1175 XXXXXXXXXXXXXXXPPRLKSQGATA-------ASKDKEEPAKGRKRDGRNMNSRPSERP 1333
                           P  L  + A         AS  +  P + R R   +M +R    P
Sbjct: 480  ------TRGSWGLPSPRSLPGRSARGIGSRLPPASVKRPVPVRDR-RPIMSMTARARPMP 532

Query: 1334 SKKPRGNARGSGRPMNGSGNRGNSFHSGRGGRQAPRYDRAPAAYVD-------PYVRGYT 1492
               PR   R +  P+      G     GR     P   RAP  Y         PY   YT
Sbjct: 533  PPPPRSYDRRA--PVPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRPYRDEYT 590

Query: 1493 APGPSYAG--HAYSAVSDMEPHA--GYLKPASQGRDPYDDYRQRRAGGYVTQGSGPTSYV 1660
            + G  Y     + S  +   P+   GY   A +   P   YR+ RA  Y T       Y 
Sbjct: 591  SRGSGYPDMPRSTSRGAARRPYVDDGY---AQRFERPPPSYREGRARDYETVSGSKRPYS 647

Query: 1661 GGSMLPPPSYAPGYQRYAA 1717
                +PP    PG +   A
Sbjct: 648  VVDDVPPRYADPGVRHSRA 666


>ref|XP_002526479.1| RNA binding protein, putative [Ricinus communis]
            gi|223534154|gb|EEF35870.1| RNA binding protein, putative
            [Ricinus communis]
          Length = 784

 Score =  290 bits (741), Expect = 1e-75
 Identities = 138/279 (49%), Positives = 216/279 (77%), Gaps = 3/279 (1%)
 Frame = +2

Query: 284  KDKKKQTGVEIFVGGLNRKAVEEDLIKVFGELGEIKAVRIVKHPVTKRSKGYAFISYATV 463
            K+++K+   E+FVGGL++ A E+DL KVF  +GE+  VR++ +P TK++KG+AF+ ++TV
Sbjct: 205  KERRKRKEFEVFVGGLDKDATEDDLRKVFTRVGEVTEVRLMMNPQTKKNKGFAFLRFSTV 264

Query: 464  EQAQKVLADLKDGIEVKGKRAGVSPSQDSDTLYMGNISKSWTKEQVLETLKGFGIENFEE 643
            EQA+K + +LK+ + + GK+ GV+PSQDSDTL++GNI K+WTKE + E LK +G+EN E+
Sbjct: 265  EQAKKAVTELKNPV-INGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVED 323

Query: 644  IYIPEDPKGEGKIRGFAYLEFLTHSDAMTAFQRLRKPDAVFGRNRSAKVAFAPS-MHPSE 820
            + + ED   EG  RGFA+LEF + SDAM AF+RL+K D +FG +R AKV+FA S + P +
Sbjct: 324  VTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 383

Query: 821  EALSQVKTVYVEGLTDSWGEEKLKQLCEQYGEVEKIQLSRDLVTVKRKDFGFVSFTSREN 1000
            E ++QVKTV+V+GL  SW E+++++L +++GE+EKI+L+R++ + KRKDFGFV+F S + 
Sbjct: 384  EIMAQVKTVFVDGLPASWDEDRVRELLKKFGEIEKIELARNMPSAKRKDFGFVTFDSHDA 443

Query: 1001 ALACVAAINNAQIGEGE--VKIKANIAKPQYKGRLGKNA 1111
            A+ C  +INNA++GEG+   K++A +++P  +G+ GK+A
Sbjct: 444  AVTCAKSINNAELGEGDNKAKVRARLSRPLQRGK-GKHA 481


>gb|AAN77868.1| putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera]
          Length = 342

 Score =  289 bits (740), Expect = 2e-75
 Identities = 137/289 (47%), Positives = 218/289 (75%), Gaps = 3/289 (1%)
 Frame = +2

Query: 284  KDKKKQTGVEIFVGGLNRKAVEEDLIKVFGELGEIKAVRIVKHPVTKRSKGYAFISYATV 463
            K+++K+   E+FVGGL++ A E+DL KVF ++GE+  VR++ +P TK++KG+AF+ +ATV
Sbjct: 23   KERRKRKEFEVFVGGLDKDATEDDLKKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV 82

Query: 464  EQAQKVLADLKDGIEVKGKRAGVSPSQDSDTLYMGNISKSWTKEQVLETLKGFGIENFEE 643
            EQA++ + +LK+ + V GK+ GV+PSQDSDTL++GNI K+WTKE + E LK +G+EN E+
Sbjct: 83   EQAKRAVTELKNPV-VNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVED 141

Query: 644  IYIPEDPKGEGKIRGFAYLEFLTHSDAMTAFQRLRKPDAVFGRNRSAKVAFAPS-MHPSE 820
            + + ED   EG  RGFA+LEF   SDAM AF+RL++   VFG +R+AKV+F  S + P +
Sbjct: 142  LTLVEDSNNEGMNRGFAFLEFSFRSDAMDAFKRLQEERCVFGVDRTAKVSFTDSFIDPGD 201

Query: 821  EALSQVKTVYVEGLTDSWGEEKLKQLCEQYGEVEKIQLSRDLVTVKRKDFGFVSFTSREN 1000
            E ++QVKTV+++GL  SW E+++++L ++YGE+EKI+L+R++ + KRKDFGFV+F + + 
Sbjct: 202  EIMAQVKTVFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDA 261

Query: 1001 ALACVAAINNAQIGEGE--VKIKANIAKPQYKGRLGKNARGGYKVQKDG 1141
            A+ C  +INNA++GEGE   K++A +++P  +G+    +RG ++  + G
Sbjct: 262  AVTCAKSINNAELGEGENKAKVRARLSRPLQRGKGKHISRGDFRPGRGG 310


>ref|NP_001053453.1| Os04g0543200 [Oryza sativa Japonica Group]
            gi|38345947|emb|CAE04271.2| OSJNBb0103I08.18 [Oryza
            sativa Japonica Group] gi|38345949|emb|CAE04337.2|
            OSJNBb0038F03.1 [Oryza sativa Japonica Group]
            gi|113565024|dbj|BAF15367.1| Os04g0543200 [Oryza sativa
            Japonica Group] gi|215678877|dbj|BAG95314.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|215717042|dbj|BAG95405.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 774

 Score =  288 bits (738), Expect = 3e-75
 Identities = 176/486 (36%), Positives = 267/486 (54%), Gaps = 19/486 (3%)
 Frame = +2

Query: 281  LKDKKKQTGVEIFVGGLNRKAVEEDLIKVFGELGEIKAVRIVKHPVTKRSKGYAFISYAT 460
            +K+ +K+   E+FVGGL++ A E DL KVFGE+GEI  VR++ +PVTK++KG+AF+ YAT
Sbjct: 181  VKEHRKRKEFEVFVGGLDKDATESDLRKVFGEVGEITEVRLMMNPVTKKNKGFAFLRYAT 240

Query: 461  VEQAQKVLADLKDGIEVKGKRAGVSPSQDSDTLYMGNISKSWTKEQVLETLKGFGIENFE 640
            VEQA++ +++LK+   V+GK+ GV+PS D+DTL++GNI K+WTKE + E LK +G+ENF+
Sbjct: 241  VEQARRAVSELKNP-SVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKLKSYGVENFD 299

Query: 641  EIYIPEDPKGEGKIRGFAYLEFLTHSDAMTAFQRLRKPDAVFGRNRSAKVAFAPSM-HPS 817
            ++ + ED    G  RG+A LEF T  +AM AF+RL+K D VFG +RSAKV+FA S     
Sbjct: 300  DLLLVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVDRSAKVSFADSYPEVD 359

Query: 818  EEALSQVKTVYVEGLTDSWGEEKLKQLCEQYGEVEKIQLSRDLVTVKRKDFGFVSFTSRE 997
            +E ++QV+TV+++GL  SW E+++K+  ++YG +EK++L+R++   KRKDFGFV+F + +
Sbjct: 360  DEIMAQVRTVFIDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHD 419

Query: 998  NALACVAAINNAQIGEGE--VKIKANIAKP-QYKGRLGKNARGGYKVQKDGEKVXXXXXX 1168
            NA+AC   I N++IGEG+   K++A +++P Q   R+    RG ++V +   +       
Sbjct: 420  NAVACADGITNSEIGEGDSKAKVRARLSRPLQRPPRMKHGLRGNFRVGQGAPR------- 472

Query: 1169 XXXXXXXXXXXXXXXXXPPRLKSQGAT-----AASKDKEEPAKGRKRDGRNMNSRPSERP 1333
                             PPRL     +       S+  + P     RD R + S P    
Sbjct: 473  --GGRFAYDRPPPLRRPPPRLLRPDVSRLPPPVRSRPLKRPVD--IRDRRPVMSIPDRVR 528

Query: 1334 SKKPRGNARGSGRPMNGSGNRGNSFHSGRGGRQAPRYDRA------PAAYVD--PYVRGY 1489
               P   +     P      R      GR     P   RA          VD  PY   Y
Sbjct: 529  RLPPPERSYDRRPPAPVYPKRSPRREYGRRDELPPPRSRATFGDYSSRVPVDRRPYRDDY 588

Query: 1490 TAPGPSYAGHAYSAVSDMEPHAGYLKPASQGR--DPYDDYRQRRAGGYVTQGSGPTSYVG 1663
            +  G +Y+     +   +     Y+     G+   P   YR+ R   Y T      SY  
Sbjct: 589  SPRGSAYSDLGPRSAPRLSDRRAYIDDGYGGKIDRPLPTYREGRGRDYDTMSGSKRSYAE 648

Query: 1664 GSMLPP 1681
               +PP
Sbjct: 649  MDDVPP 654