BLASTX nr result
ID: Cimicifuga21_contig00002041
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00002041
(2111 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL31067.1|AC090120_13 putative DNA ligase [Oryza sativa Japo... 227 1e-56
ref|NP_001064917.1| Os10g0489200 [Oryza sativa Japonica Group] g... 227 1e-56
tpg|DAA49534.1| TPA: putative DNA ligase family protein [Zea mays] 225 4e-56
ref|XP_003571920.1| PREDICTED: DNA ligase 1-like [Brachypodium d... 223 2e-55
ref|XP_002464455.1| hypothetical protein SORBIDRAFT_01g018700 [S... 223 2e-55
>gb|AAL31067.1|AC090120_13 putative DNA ligase [Oryza sativa Japonica Group]
gi|31432783|gb|AAP54376.1| DNA ligase, putative,
expressed [Oryza sativa Japonica Group]
gi|40539108|gb|AAR87364.1| putative DNA ligase [Oryza
sativa Japonica Group]
Length = 810
Score = 227 bits (578), Expect = 1e-56
Identities = 151/334 (45%), Positives = 190/334 (56%), Gaps = 38/334 (11%)
Frame = -2
Query: 1873 LQLKKKASVFKPKSAAYWEEGEPVPFMFLARAFDMIATENSPIKSAEILCNVFRTVIATT 1694
L+LKKK S F P +AAYW EPVPF+FLARA D+I+ E+ I EIL NVFRTVIATT
Sbjct: 172 LELKKKGSEFNPMAAAYWSPEEPVPFLFLARALDLISNESGRIVITEILSNVFRTVIATT 231
Query: 1693 PGDLIAVVHLL---VRPSYH---LGIVKDTLLKALAEAYGKEEEHVRNLAKTFTMGDLGS 1532
P DL+A V+L + P + LGI ++++ALAEAYG+ EEHV+ K +GDLG
Sbjct: 232 PEDLLATVYLSANRIAPPHEGTELGIGDASIIRALAEAYGRREEHVKKNLKE--LGDLGL 289
Query: 1531 VAKXXXXXXXXXXXXXXLTVVGVLRRLRSISKVSGMDSQDKKKIHVRELLNPATDCEPLY 1352
VAK LT+ VL + R+I+K SG DSQDKK+ H++ LL ATDCEP Y
Sbjct: 290 VAKASRLSQKMMYKPKPLTISHVLAKFRTIAKESGKDSQDKKRNHIKGLLVAATDCEPQY 349
Query: 1351 LIRLLQSNLRIGLTEKIVLDGLRCAVAYSKKHPPLPLQFQHSLAKATKIIKR-------- 1196
+ RLLQS +RIGL EK V L A YS+KH P P + Q +A KIIK+
Sbjct: 350 ITRLLQSKMRIGLAEKTVQMALGQAAVYSEKHSP-PSKIQSPFEEAAKIIKQVYSVLPIY 408
Query: 1195 -----HGCEVGLPVEPIPENSSMYDGGSGCEVGLPVGPTLANPT---------------- 1079
EVG V +PE S +G+PVGP LA T
Sbjct: 409 DKIVPAILEVG--VWKLPEICSF-------SIGVPVGPMLAKATKSVSEIIDKFQGLEYT 459
Query: 1078 ---KYDEECAEMHLMEHKSVEIYSCNAKQITEKF 986
KYD E A++H +E SVEIYS NA++ T K+
Sbjct: 460 CEYKYDGERAQIHCLEDGSVEIYSRNAERNTGKY 493
Score = 154 bits (389), Expect(2) = 3e-38
Identities = 72/135 (53%), Positives = 100/135 (74%), Gaps = 2/135 (1%)
Frame = -3
Query: 834 GVYVAFLLACYDSKNKEYQSTGIIETEFSETMLEEHSARLRTTVIPEPKPYYRYPETLNP 655
GVY +FLLACYD +N+EYQ+ I T FSE LEE S LRT IP+PK YYR+ +T++P
Sbjct: 668 GVYGSFLLACYDEQNEEYQTICNIGTGFSEQQLEERSVSLRTKAIPKPKAYYRFADTMDP 727
Query: 654 DVWFEPTEVWEVKPVDLSLDQVYNAAIAALDPNKGVSPPFPCFLKVREDKFPKQTTSSDR 475
DVWFEP+EVWEVK DLS+ V+ AA +DPNKG+S FP L+VR+DK P+Q T+S++
Sbjct: 728 DVWFEPSEVWEVKAADLSISPVHRAANGIVDPNKGISLRFPRLLRVRDDKNPEQATTSEQ 787
Query: 474 --ELFRVAEMFHSRS 436
+++R +++H+ +
Sbjct: 788 VADMYRAQKIYHANN 802
Score = 32.7 bits (73), Expect(2) = 3e-38
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2
Query: 964 SSGDSLDLVPIAAFHVHGE 908
S GDSLDLVPIAAFH G+
Sbjct: 647 SIGDSLDLVPIAAFHGRGK 665
>ref|NP_001064917.1| Os10g0489200 [Oryza sativa Japonica Group]
gi|113639526|dbj|BAF26831.1| Os10g0489200 [Oryza sativa
Japonica Group]
Length = 828
Score = 227 bits (578), Expect = 1e-56
Identities = 151/334 (45%), Positives = 190/334 (56%), Gaps = 38/334 (11%)
Frame = -2
Query: 1873 LQLKKKASVFKPKSAAYWEEGEPVPFMFLARAFDMIATENSPIKSAEILCNVFRTVIATT 1694
L+LKKK S F P +AAYW EPVPF+FLARA D+I+ E+ I EIL NVFRTVIATT
Sbjct: 278 LELKKKGSEFNPMAAAYWSPEEPVPFLFLARALDLISNESGRIVITEILSNVFRTVIATT 337
Query: 1693 PGDLIAVVHLL---VRPSYH---LGIVKDTLLKALAEAYGKEEEHVRNLAKTFTMGDLGS 1532
P DL+A V+L + P + LGI ++++ALAEAYG+ EEHV+ K +GDLG
Sbjct: 338 PEDLLATVYLSANRIAPPHEGTELGIGDASIIRALAEAYGRREEHVKKNLKE--LGDLGL 395
Query: 1531 VAKXXXXXXXXXXXXXXLTVVGVLRRLRSISKVSGMDSQDKKKIHVRELLNPATDCEPLY 1352
VAK LT+ VL + R+I+K SG DSQDKK+ H++ LL ATDCEP Y
Sbjct: 396 VAKASRLSQKMMYKPKPLTISHVLAKFRTIAKESGKDSQDKKRNHIKGLLVAATDCEPQY 455
Query: 1351 LIRLLQSNLRIGLTEKIVLDGLRCAVAYSKKHPPLPLQFQHSLAKATKIIKR-------- 1196
+ RLLQS +RIGL EK V L A YS+KH P P + Q +A KIIK+
Sbjct: 456 ITRLLQSKMRIGLAEKTVQMALGQAAVYSEKHSP-PSKIQSPFEEAAKIIKQVYSVLPIY 514
Query: 1195 -----HGCEVGLPVEPIPENSSMYDGGSGCEVGLPVGPTLANPT---------------- 1079
EVG V +PE S +G+PVGP LA T
Sbjct: 515 DKIVPAILEVG--VWKLPEICSF-------SIGVPVGPMLAKATKSVSEIIDKFQGLEYT 565
Query: 1078 ---KYDEECAEMHLMEHKSVEIYSCNAKQITEKF 986
KYD E A++H +E SVEIYS NA++ T K+
Sbjct: 566 CEYKYDGERAQIHCLEDGSVEIYSRNAERNTGKY 599
Score = 61.6 bits (148), Expect(2) = 1e-10
Identities = 30/54 (55%), Positives = 37/54 (68%)
Frame = -3
Query: 834 GVYVAFLLACYDSKNKEYQSTGIIETEFSETMLEEHSARLRTTVIPEPKPYYRY 673
GVY +FLLACYD +N+EYQ+ I T FSE LEE S LRT IP+PK + +
Sbjct: 774 GVYGSFLLACYDEQNEEYQTICNIGTGFSEQQLEERSVSLRTKAIPKPKLCFHF 827
Score = 32.7 bits (73), Expect(2) = 1e-10
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2
Query: 964 SSGDSLDLVPIAAFHVHGE 908
S GDSLDLVPIAAFH G+
Sbjct: 753 SIGDSLDLVPIAAFHGRGK 771
>tpg|DAA49534.1| TPA: putative DNA ligase family protein [Zea mays]
Length = 909
Score = 225 bits (573), Expect = 4e-56
Identities = 145/325 (44%), Positives = 192/325 (59%), Gaps = 29/325 (8%)
Frame = -2
Query: 1873 LQLKKKASVFKPKSAAYWEEGEPVPFMFLARAFDMIATENSPIKSAEILCNVFRTVIATT 1694
L+LKKK S F P + AYW+ GEPVPF+FLARA D+I+ E+ I EIL NVFRTV+ATT
Sbjct: 272 LELKKKGSEFDPMAVAYWKPGEPVPFLFLARALDLISNESGRIVITEILSNVFRTVMATT 331
Query: 1693 PGDLIAVVHL---LVRPSY---HLGIVKDTLLKALAEAYGKEEEHVRNLAKTFTMGDLGS 1532
P DL+A V+L + P + LGI ++++ALAEAYG++EEHV+ K +GDLG
Sbjct: 332 PDDLLATVYLSANRIAPPHEGIELGIGDASVIRALAEAYGRKEEHVKKDLK--ELGDLGL 389
Query: 1531 VAKXXXXXXXXXXXXXXLTVVGVLRRLRSISKVSGMDSQDKKKIHVRELLNPATDCEPLY 1352
VAK LT+ VL R+I+K SG DSQDKK+ H++ LL ATDCEP Y
Sbjct: 390 VAKASRSSQKMMFKPKPLTIARVLSTFRTIAKESGKDSQDKKRNHMKGLLVAATDCEPQY 449
Query: 1351 LIRLLQSNLRIGLTEKIVLDGLRCAVAYSKKHPPLPLQFQHSLAKATKIIKRHGCEVGLP 1172
+ RLLQS +RIGL EK V L A Y+ K+ PLP + Q +A KIIK+ + +
Sbjct: 450 ITRLLQSKMRIGLAEKTVQMALGQAAVYADKN-PLPPKVQSPFEEAAKIIKQAYSVLPIY 508
Query: 1171 VEPIPE--NSSMYDGGSGCE--VGLPVGPTLANPT-------------------KYDEEC 1061
+ +P ++ C+ +G+PVGP LA T KYD E
Sbjct: 509 DKIVPAILEVGVWKLPETCKFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGER 568
Query: 1060 AEMHLMEHKSVEIYSCNAKQITEKF 986
A++H ME SVEIYS NA++ T K+
Sbjct: 569 AQIHCMEDGSVEIYSRNAERNTGKY 593
Score = 151 bits (382), Expect(2) = 1e-36
Identities = 74/132 (56%), Positives = 98/132 (74%)
Frame = -3
Query: 834 GVYVAFLLACYDSKNKEYQSTGIIETEFSETMLEEHSARLRTTVIPEPKPYYRYPETLNP 655
GV+ +FLLACYD +N+EYQ+ I T FSE LEE SA LR+ VI +PK YYR+ +T+NP
Sbjct: 768 GVFGSFLLACYDEQNEEYQTICNIGTGFSEQQLEERSASLRSKVIEKPKAYYRFGDTMNP 827
Query: 654 DVWFEPTEVWEVKPVDLSLDQVYNAAIAALDPNKGVSPPFPCFLKVREDKFPKQTTSSDR 475
DVWFEP+EVWEVK DLS+ V+ AA +DPNKG+S FP L++R+DK P+Q T+SD
Sbjct: 828 DVWFEPSEVWEVKAADLSISPVHRAANGIVDPNKGISLRFPRLLRLRDDKSPEQATTSD- 886
Query: 474 ELFRVAEMFHSR 439
+VA+M+ S+
Sbjct: 887 ---QVADMYRSQ 895
Score = 30.4 bits (67), Expect(2) = 1e-36
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -2
Query: 964 SSGDSLDLVPIAAFHVHGE 908
S GDSLDLVPIAAF+ G+
Sbjct: 747 SIGDSLDLVPIAAFYGRGK 765
>ref|XP_003571920.1| PREDICTED: DNA ligase 1-like [Brachypodium distachyon]
Length = 918
Score = 223 bits (567), Expect = 2e-55
Identities = 143/324 (44%), Positives = 190/324 (58%), Gaps = 29/324 (8%)
Frame = -2
Query: 1870 QLKKKASVFKPKSAAYWEEGEPVPFMFLARAFDMIATENSPIKSAEILCNVFRTVIATTP 1691
+LKKK S F P +AAYW+ EPVPF+FLA+A D+I+ E+ I EIL NVFRT+IATTP
Sbjct: 280 ELKKKGSEFDPMAAAYWKPTEPVPFLFLAQALDLISNESGRIVITEILSNVFRTIIATTP 339
Query: 1690 GDLIAVVHLL---VRPSYH---LGIVKDTLLKALAEAYGKEEEHVRNLAKTFTMGDLGSV 1529
DL+A V+L + P + LGI ++++ALAEAYG++EEHV+ K +GDLG V
Sbjct: 340 EDLLATVYLSANRIAPPHEGIELGIGDASIIRALAEAYGRKEEHVKKNLKE--LGDLGLV 397
Query: 1528 AKXXXXXXXXXXXXXXLTVVGVLRRLRSISKVSGMDSQDKKKIHVRELLNPATDCEPLYL 1349
AK LT+ VL R+I+K SG DSQDKK+ H++ LL ATDCEP Y+
Sbjct: 398 AKASRLSQKMMYKPKPLTIARVLDTFRTIAKESGKDSQDKKRSHIKGLLVAATDCEPQYI 457
Query: 1348 IRLLQSNLRIGLTEKIVLDGLRCAVAYSKKHPPLPLQFQHSLAKATKIIKRHGCEVGLPV 1169
IRLLQS +RIGL EK V L A YS++ P P + Q +A KIIK+ + +
Sbjct: 458 IRLLQSKMRIGLAEKTVQMALGQAAVYSEEGSP-PAKVQSPFEEAAKIIKQAYSVLPIYD 516
Query: 1168 EPIPE--NSSMYDGGSGC--EVGLPVGPTLANPT-------------------KYDEECA 1058
+P + ++ C +G+PVGP LA T KYD E A
Sbjct: 517 RIVPTLLEAGVWKLPETCNFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERA 576
Query: 1057 EMHLMEHKSVEIYSCNAKQITEKF 986
++H ME SVEIYS NA++ T K+
Sbjct: 577 QIHCMEDGSVEIYSRNAERNTGKY 600
Score = 147 bits (370), Expect(2) = 5e-36
Identities = 71/135 (52%), Positives = 97/135 (71%), Gaps = 2/135 (1%)
Frame = -3
Query: 834 GVYVAFLLACYDSKNKEYQSTGIIETEFSETMLEEHSARLRTTVIPEPKPYYRYPETLNP 655
GVY +FLLACYD +N+EYQ+ I T FSE LEE S LR+ VI +PK YYR+ +T +P
Sbjct: 775 GVYGSFLLACYDEQNEEYQTICNIGTGFSEQQLEERSTSLRSKVISKPKAYYRFADTTDP 834
Query: 654 DVWFEPTEVWEVKPVDLSLDQVYNAAIAALDPNKGVSPPFPCFLKVREDKFPKQTTSSDR 475
DVWFEP+EVWEVK DLS+ V+ AA +DPNKG+S FP L+VR+DK P+ T+S++
Sbjct: 835 DVWFEPSEVWEVKAADLSISPVHRAANGIVDPNKGISLRFPRLLRVRDDKNPEHATTSEQ 894
Query: 474 --ELFRVAEMFHSRS 436
+++R ++ HS +
Sbjct: 895 VADMYRAQKINHSHN 909
Score = 32.7 bits (73), Expect(2) = 5e-36
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2
Query: 964 SSGDSLDLVPIAAFHVHGE 908
S GDSLDLVPIAAFH G+
Sbjct: 754 SVGDSLDLVPIAAFHGRGK 772
>ref|XP_002464455.1| hypothetical protein SORBIDRAFT_01g018700 [Sorghum bicolor]
gi|241918309|gb|EER91453.1| hypothetical protein
SORBIDRAFT_01g018700 [Sorghum bicolor]
Length = 905
Score = 223 bits (567), Expect = 2e-55
Identities = 145/325 (44%), Positives = 191/325 (58%), Gaps = 29/325 (8%)
Frame = -2
Query: 1873 LQLKKKASVFKPKSAAYWEEGEPVPFMFLARAFDMIATENSPIKSAEILCNVFRTVIATT 1694
L+LKKK S F P +AAYW+ GEPVPF+FLARA D+I+ E+ I EIL NVFRTV+ATT
Sbjct: 294 LELKKKGSEFDPMAAAYWKPGEPVPFLFLARALDLISNESGRIVITEILSNVFRTVMATT 353
Query: 1693 PGDLIAVVHL---LVRPSY---HLGIVKDTLLKALAEAYGKEEEHVRNLAKTFTMGDLGS 1532
P DL+A V+L + P + LGI ++++ALAEAYG++EEHV+ K +GDLG
Sbjct: 354 PDDLLATVYLSANRIAPPHEGIELGIGDASVIRALAEAYGRKEEHVKKDLK--ELGDLGL 411
Query: 1531 VAKXXXXXXXXXXXXXXLTVVGVLRRLRSISKVSGMDSQDKKKIHVRELLNPATDCEPLY 1352
VAK LT+ VL R+I+K SG DSQDKK+ H++ LL ATDCEP Y
Sbjct: 412 VAKASRSSQKMMFKPKPLTIARVLSTFRAIAKESGKDSQDKKRNHMKGLLVAATDCEPQY 471
Query: 1351 LIRLLQSNLRIGLTEKIVLDGLRCAVAYSKKHPPLPLQFQHSLAKATKIIKRHGCEVGLP 1172
+ RLLQS +RIGL EK V L A YS K+ P + Q +A KIIK+ + +
Sbjct: 472 ITRLLQSKMRIGLAEKTVQMALGQAAVYSDKNSS-PPKVQSPFEEAAKIIKQAYSVLPIY 530
Query: 1171 VEPIPE--NSSMYDGGSGCE--VGLPVGPTLANPT-------------------KYDEEC 1061
+ +P ++ C+ +G+PVGP LA T KYD E
Sbjct: 531 DKIVPAILEVGVWKLPETCKFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGER 590
Query: 1060 AEMHLMEHKSVEIYSCNAKQITEKF 986
A++H ME SVEIYS NA++ T K+
Sbjct: 591 AQIHCMEDGSVEIYSRNAERNTGKY 615
Score = 119 bits (299), Expect(2) = 4e-27
Identities = 56/94 (59%), Positives = 71/94 (75%)
Frame = -3
Query: 834 GVYVAFLLACYDSKNKEYQSTGIIETEFSETMLEEHSARLRTTVIPEPKPYYRYPETLNP 655
GV+ +FLLACYD +N+EYQ+ I T FSE LEE SA LR+ VI +PK YYR+ +T++P
Sbjct: 790 GVFGSFLLACYDEQNEEYQTICNIGTGFSEQQLEERSASLRSKVIEKPKAYYRFADTMDP 849
Query: 654 DVWFEPTEVWEVKPVDLSLDQVYNAAIAALDPNK 553
DVWFEP+EVWEVK DLS+ V+ AA +DPNK
Sbjct: 850 DVWFEPSEVWEVKAADLSISPVHRAANGIVDPNK 883
Score = 30.4 bits (67), Expect(2) = 4e-27
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -2
Query: 964 SSGDSLDLVPIAAFHVHGE 908
S GDSLDLVPIAAF+ G+
Sbjct: 769 SIGDSLDLVPIAAFYGRGK 787