BLASTX nr result

ID: Cimicifuga21_contig00002032 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00002032
         (661 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004140655.1| PREDICTED: 40S ribosomal protein S27-2-like ...   173   3e-41
emb|CBI21255.3| unnamed protein product [Vitis vinifera]              171   1e-40
ref|XP_002512685.1| 40S ribosomal protein S27, putative [Ricinus...   171   1e-40
ref|NP_001236263.1| uncharacterized protein LOC100499804 [Glycin...   170   2e-40
gb|ADN33695.1| 40S ribosomal protein s27 [Cucumis melo subsp. melo]   170   3e-40

>ref|XP_004140655.1| PREDICTED: 40S ribosomal protein S27-2-like [Cucumis sativus]
           gi|449487447|ref|XP_004157631.1| PREDICTED: 40S
           ribosomal protein S27-2-like [Cucumis sativus]
          Length = 161

 Score =  173 bits (438), Expect = 3e-41
 Identities = 81/92 (88%), Positives = 86/92 (93%)
 Frame = +2

Query: 65  SISSAKMGLSNDIDILNPPSDLEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT 244
           S+SS    L NDID+LNPP++LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT
Sbjct: 70  SVSSFNQVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT 129

Query: 245 VVVCGNCQTVLCQPTGGRARLTEGSSFRRKGD 340
           VVVCGNCQTVLCQPTGGRA+LTEG SFRRKGD
Sbjct: 130 VVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 161


>emb|CBI21255.3| unnamed protein product [Vitis vinifera]
          Length = 160

 Score =  171 bits (433), Expect = 1e-40
 Identities = 86/128 (67%), Positives = 95/128 (74%), Gaps = 17/128 (13%)
 Frame = +2

Query: 8   ISSILAALELKQSLGFPPTSIS-----------------SAKMGLSNDIDILNPPSDLEK 136
           +S  ++ +E+   LG  P S                   S KM L NDID+LNPP++LEK
Sbjct: 33  LSQQISPIEMLSGLGLRPKSFPAPLLLDFGRRVSASAKVSTKMVLPNDIDLLNPPAELEK 92

Query: 137 RKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEG 316
           RKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRARLTEG
Sbjct: 93  RKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQLVLCQPTGGRARLTEG 152

Query: 317 SSFRRKGD 340
            SFR+KGD
Sbjct: 153 CSFRKKGD 160


>ref|XP_002512685.1| 40S ribosomal protein S27, putative [Ricinus communis]
           gi|255556735|ref|XP_002519401.1| 40S ribosomal protein
           S27, putative [Ricinus communis]
           gi|449452042|ref|XP_004143769.1| PREDICTED: 40S
           ribosomal protein S27-2-like [Cucumis sativus]
           gi|449525069|ref|XP_004169542.1| PREDICTED: 40S
           ribosomal protein S27-2-like [Cucumis sativus]
           gi|223541468|gb|EEF43018.1| 40S ribosomal protein S27,
           putative [Ricinus communis] gi|223548646|gb|EEF50137.1|
           40S ribosomal protein S27, putative [Ricinus communis]
          Length = 86

 Score =  171 bits (433), Expect = 1e-40
 Identities = 80/86 (93%), Positives = 83/86 (96%)
 Frame = +2

Query: 83  MGLSNDIDILNPPSDLEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 262
           M L NDID+LNPP++LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 263 CQTVLCQPTGGRARLTEGSSFRRKGD 340
           CQTVLCQPTGGRARLTEG SFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86


>ref|NP_001236263.1| uncharacterized protein LOC100499804 [Glycine max]
           gi|255626769|gb|ACU13729.1| unknown [Glycine max]
          Length = 90

 Score =  170 bits (431), Expect = 2e-40
 Identities = 80/90 (88%), Positives = 84/90 (93%)
 Frame = +2

Query: 83  MGLSNDIDILNPPSDLEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 262
           M L NDID+LNPP++LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 263 CQTVLCQPTGGRARLTEGSSFRRKGD*WRC 352
           CQTVLCQPTGGRARLTEG SFR+KGD   C
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRKKGDWMVC 90


>gb|ADN33695.1| 40S ribosomal protein s27 [Cucumis melo subsp. melo]
          Length = 86

 Score =  170 bits (430), Expect = 3e-40
 Identities = 79/86 (91%), Positives = 83/86 (96%)
 Frame = +2

Query: 83  MGLSNDIDILNPPSDLEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 262
           M L NDID+LNPP++LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 263 CQTVLCQPTGGRARLTEGSSFRRKGD 340
           CQTVLCQPTGGRA+LTEG SFRRKGD
Sbjct: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 86


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