BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00001888
         (1649 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284215.1| PREDICTED: RNA and export factor-binding pro...   260   9e-67
ref|XP_003539690.1| PREDICTED: RNA and export factor-binding pro...   247   7e-63
ref|XP_003538006.1| PREDICTED: RNA and export factor-binding pro...   246   1e-62
ref|XP_002531375.1| RNA and export factor binding protein, putat...   245   3e-62
emb|CAN83715.1| hypothetical protein VITISV_023787 [Vitis vinifera]   244   6e-62

>ref|XP_002284215.1| PREDICTED: RNA and export factor-binding protein 2 [Vitis vinifera]
            gi|297746115|emb|CBI16171.3| unnamed protein product
            [Vitis vinifera]
          Length = 243

 Score =  260 bits (664), Expect = 9e-67
 Identities = 152/274 (55%), Positives = 165/274 (60%)
 Frame = +3

Query: 219  MSSALDMSLDDLIKNNKKXXXXXXXXXXXXXXXXXXXXXXXXXXFQNRGANRTTPYSLGK 398
            MS+ALDMSLDDLIKNNK+                            NRGANR TPYS+ K
Sbjct: 1    MSNALDMSLDDLIKNNKRSGGGGNARGRGRGSGPGPARR-----LPNRGANRITPYSVSK 55

Query: 399  PVQAPDSTWQHDLFSDPLXXXXXXXXXXXYPGQGGRGSAIETGTKLYISNLDYGVSNEDI 578
               AP++TWQHD+F+D             YP Q GR SAIETGTKLYISNLDYGVSNEDI
Sbjct: 56   ---APETTWQHDMFADQAAA---------YPAQAGRTSAIETGTKLYISNLDYGVSNEDI 103

Query: 579  KELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKIEIVG 758
            KELFSEVGDLKR+ +HYDRSGRSKGTAEVVFSRR DA AAVKRYNNVQLDGKPMKIEIVG
Sbjct: 104  KELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVG 163

Query: 759  TNIVTPGAVPLVSNGIFANPSSVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 938
            TNI TP AVP V+NG F N +                                       
Sbjct: 164  TNIATPAAVPPVTNGTFGNSNG--------------GLRSAQGRVGSQGRPRGGSGGRGF 209

Query: 939  XXXXXXXXXXDQVVSAQDLDADLEKYHSEAMQIN 1040
                       + VSA+DLDADLEKYHSEAMQIN
Sbjct: 210  GRGRGRGRGRGEKVSAEDLDADLEKYHSEAMQIN 243


>ref|XP_003539690.1| PREDICTED: RNA and export factor-binding protein 2-like [Glycine max]
          Length = 247

 Score =  247 bits (630), Expect = 7e-63
 Identities = 143/274 (52%), Positives = 162/274 (59%)
 Frame = +3

Query: 219  MSSALDMSLDDLIKNNKKXXXXXXXXXXXXXXXXXXXXXXXXXXFQNRGANRTTPYSLGK 398
            MS+A+DMSLDD+IKNNKK                            NR ANR  PY+   
Sbjct: 1    MSAAMDMSLDDIIKNNKKSGSGSSRGRTRPSGSGPTRR------LPNRAANRAAPYA--- 51

Query: 399  PVQAPDSTWQHDLFSDPLXXXXXXXXXXXYPGQGGRGSAIETGTKLYISNLDYGVSNEDI 578
            P +AP++TWQHDL++D             YP QGGR ++IETGTKLYISNLDYGVSN+DI
Sbjct: 52   PAKAPEATWQHDLYADQ------HVAAAGYPAQGGRAASIETGTKLYISNLDYGVSNDDI 105

Query: 579  KELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKIEIVG 758
            KELF+EVGDLKRH VHYDRSGRSKGTAEVVFSRR+DA +AVKRYNNVQLDGKPMKIEIVG
Sbjct: 106  KELFAEVGDLKRHAVHYDRSGRSKGTAEVVFSRRADAVSAVKRYNNVQLDGKPMKIEIVG 165

Query: 759  TNIVTPGAVPLVSNGIFANPSSVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 938
            TNI TPG  P   NG   N + VP                                    
Sbjct: 166  TNISTPGVAP-APNGAIGNFNGVP-----------RSGQGRGGALRRPGGRGQGIRRDRG 213

Query: 939  XXXXXXXXXXDQVVSAQDLDADLEKYHSEAMQIN 1040
                       + VSA DLDADLEKYH+EAMQ+N
Sbjct: 214  RGRGRGGGGRGEKVSADDLDADLEKYHAEAMQLN 247


>ref|XP_003538006.1| PREDICTED: RNA and export factor-binding protein 2-like [Glycine max]
          Length = 247

 Score =  246 bits (629), Expect = 1e-62
 Identities = 144/274 (52%), Positives = 161/274 (58%)
 Frame = +3

Query: 219  MSSALDMSLDDLIKNNKKXXXXXXXXXXXXXXXXXXXXXXXXXXFQNRGANRTTPYSLGK 398
            MS+A+DMSLDD+IKNNKK                          F NR ANR  PY+  K
Sbjct: 1    MSAAMDMSLDDIIKNNKKSGSGSSRGRIRPSGSGPSRR------FPNRAANRAAPYATAK 54

Query: 399  PVQAPDSTWQHDLFSDPLXXXXXXXXXXXYPGQGGRGSAIETGTKLYISNLDYGVSNEDI 578
               AP++TWQHDL++D             YP QGGR ++IETGTKLYISNLDYGVS++DI
Sbjct: 55   ---APEATWQHDLYADQ------QVAAAGYPAQGGRAASIETGTKLYISNLDYGVSSDDI 105

Query: 579  KELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKIEIVG 758
            KELF+EVGDLKRH VHYDRSGRSKGTAEVVFSRR+DA AAVKRYNNVQLDGKPMKIEIVG
Sbjct: 106  KELFAEVGDLKRHAVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIVG 165

Query: 759  TNIVTPGAVPLVSNGIFANPSSVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 938
            TNI TPG  P   NG   N   VP                                    
Sbjct: 166  TNISTPGVAP-ARNGAIGNFDGVP-----------RSGQGRGGALRRPGGRGQGVRRDRG 213

Query: 939  XXXXXXXXXXDQVVSAQDLDADLEKYHSEAMQIN 1040
                       + VSA DLDADLEKYH+EAMQ+N
Sbjct: 214  RGRGRGGAGRGEKVSADDLDADLEKYHAEAMQLN 247


>ref|XP_002531375.1| RNA and export factor binding protein, putative [Ricinus communis]
            gi|223529035|gb|EEF31023.1| RNA and export factor binding
            protein, putative [Ricinus communis]
          Length = 247

 Score =  245 bits (625), Expect = 3e-62
 Identities = 147/277 (53%), Positives = 162/277 (58%), Gaps = 3/277 (1%)
 Frame = +3

Query: 219  MSSALDMSLDDLIKNNKKXXXXXXXXXXXXXXXXXXXXXXXXXXFQNRGANRTTPYSLGK 398
            MSSALDMSLDD+IK+NKK                          F NRG NR  PY+  K
Sbjct: 1    MSSALDMSLDDIIKSNKKPGSGNSRGRGRSSGPGPTRR------FNNRGTNRAAPYAAAK 54

Query: 399  PVQAPDSTWQHDLFSDPLXXXXXXXXXXXYPGQGG---RGSAIETGTKLYISNLDYGVSN 569
               AP+STWQHD+F+D             + GQGG   R S IETGTKLYISNL+YGVSN
Sbjct: 55   ---APESTWQHDMFTDQ-------GGMGMFQGQGGGGSRASGIETGTKLYISNLEYGVSN 104

Query: 570  EDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKIE 749
            EDIKELFSEVGDLKR+ +HYDRSGRSKGTAEVVFSRR+DA AAVKRYNNVQLDGKPMKIE
Sbjct: 105  EDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKIE 164

Query: 750  IVGTNIVTPGAVPLVSNGIFANPSSVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 929
            IVGTNI TP A P  +NG F N +  P                                 
Sbjct: 165  IVGTNIATPAATP-AANGNFGNSNGAP-------------RGGQGRGGTMRRPRGASSDG 210

Query: 930  XXXXXXXXXXXXXDQVVSAQDLDADLEKYHSEAMQIN 1040
                          + VSA+DLDADLEKYHSEAMQ N
Sbjct: 211  RGFGRGRGRGRGRGEKVSAEDLDADLEKYHSEAMQTN 247


>emb|CAN83715.1| hypothetical protein VITISV_023787 [Vitis vinifera]
          Length = 281

 Score =  244 bits (622), Expect = 6e-62
 Identities = 132/199 (66%), Positives = 142/199 (71%)
 Frame = +3

Query: 219 MSSALDMSLDDLIKNNKKXXXXXXXXXXXXXXXXXXXXXXXXXXFQNRGANRTTPYSLGK 398
           MS+ALDMSLDDLIKNNK+                            NRGANR TPYS+ K
Sbjct: 1   MSNALDMSLDDLIKNNKRSGGGGNARGRGRGSGPGPARR-----LPNRGANRITPYSVSK 55

Query: 399 PVQAPDSTWQHDLFSDPLXXXXXXXXXXXYPGQGGRGSAIETGTKLYISNLDYGVSNEDI 578
              AP++TWQHD+F+D             YP Q GR SAIETGTKLYISNLDYGVSNEDI
Sbjct: 56  ---APETTWQHDMFADQAAA---------YPAQAGRTSAIETGTKLYISNLDYGVSNEDI 103

Query: 579 KELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRSDAAAAVKRYNNVQLDGKPMKIEIVG 758
           KELFSEVGDLKR+ +HYDRSGRSKGTAEVVFSRR DA AAVKRYNNVQLDGKPMKIEIVG
Sbjct: 104 KELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVG 163

Query: 759 TNIVTPGAVPLVSNGIFAN 815
           TNI TP AVP V+NG F N
Sbjct: 164 TNIATPAAVPPVTNGTFGN 182