BLASTX nr result
ID: Cimicifuga21_contig00001614
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00001614
(1222 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002523924.1| Regulator of nonsense transcripts, putative ... 119 2e-40
ref|XP_002275646.2| PREDICTED: regulator of nonsense transcripts... 118 4e-40
emb|CBI31526.3| unnamed protein product [Vitis vinifera] 118 4e-40
ref|XP_003595517.1| Pentatricopeptide repeat-containing protein ... 112 2e-39
gb|ABD32424.2| Initiation factor eIF-4 gamma, middle; Up-framesh... 112 2e-39
>ref|XP_002523924.1| Regulator of nonsense transcripts, putative [Ricinus communis]
gi|223536854|gb|EEF38493.1| Regulator of nonsense
transcripts, putative [Ricinus communis]
Length = 824
Score = 119 bits (297), Expect(2) = 2e-40
Identities = 58/71 (81%), Positives = 66/71 (92%)
Frame = -3
Query: 449 MQVEFSYLNSKSNRKRLVCALFNVPRTSLELLPYYSRMVATLSTCMKDISSMLLKNLEEE 270
+ VEF YLNSKSNRK+LV ALFNVPRTSLELLPYYSRMVATLSTCMKD+SSMLL+ LEEE
Sbjct: 484 LTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLLQMLEEE 543
Query: 269 FNYLMNKKSKL 237
FN+L+NKK ++
Sbjct: 544 FNFLINKKDQM 554
Score = 74.3 bits (181), Expect(2) = 2e-40
Identities = 43/98 (43%), Positives = 58/98 (59%)
Frame = -1
Query: 826 ESASKPDQVTVDAGEGCIDSDASQITRGAS**ANEKERG*R*RKDQRFGQGEREGKDAER 647
++ +P Q T D E D+ Q + ++ E+ KD + + + KDAER
Sbjct: 391 KTQEQPSQPTQDTAESSADTGTVQEGKSIEKGKDKDEKDKEKAKDPE--KEKNKEKDAER 448
Query: 646 KGEHEKEKVKGFEGMNLDALLQRFSGCVSCDFIDQLTV 533
KGE+EK+K+KG EG +LDALLQR GCVS D IDQLTV
Sbjct: 449 KGENEKDKLKGLEGTSLDALLQRLPGCVSRDLIDQLTV 486
>ref|XP_002275646.2| PREDICTED: regulator of nonsense transcripts 2-like [Vitis
vinifera]
Length = 1222
Score = 118 bits (296), Expect(2) = 4e-40
Identities = 58/71 (81%), Positives = 66/71 (92%)
Frame = -3
Query: 449 MQVEFSYLNSKSNRKRLVCALFNVPRTSLELLPYYSRMVATLSTCMKDISSMLLKNLEEE 270
+ V+F YLNSKSNRKRLV ALFNVPRTSLELLPYYSRMVATLSTCMKD+SSMLL+ LEEE
Sbjct: 522 LTVDFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLLQLLEEE 581
Query: 269 FNYLMNKKSKL 237
FN+L+NKK ++
Sbjct: 582 FNFLINKKDQM 592
Score = 73.9 bits (180), Expect(2) = 4e-40
Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Frame = -1
Query: 832 PKESASKPDQ---VTVDAGEGCIDSDASQITRGAS**ANEKERG*R*RKDQRFGQGEREG 662
P + A + DQ V DA E +DS + + R +++E+ KD +G+
Sbjct: 424 PTDLAPEADQSQSVNQDAAEISVDSCSPREGRSNEKGKDKEEKEKEKSKDPDKEKGKE-- 481
Query: 661 KDAERKGEHEKEKVKGFEGMNLDALLQRFSGCVSCDFIDQLTV 533
+DA+RKGE+EKEK+KG EG NLD LLQR GCVS D IDQLTV
Sbjct: 482 RDADRKGENEKEKLKGLEGTNLDGLLQRLPGCVSRDLIDQLTV 524
>emb|CBI31526.3| unnamed protein product [Vitis vinifera]
Length = 1193
Score = 118 bits (296), Expect(2) = 4e-40
Identities = 58/71 (81%), Positives = 66/71 (92%)
Frame = -3
Query: 449 MQVEFSYLNSKSNRKRLVCALFNVPRTSLELLPYYSRMVATLSTCMKDISSMLLKNLEEE 270
+ V+F YLNSKSNRKRLV ALFNVPRTSLELLPYYSRMVATLSTCMKD+SSMLL+ LEEE
Sbjct: 493 LTVDFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLLQLLEEE 552
Query: 269 FNYLMNKKSKL 237
FN+L+NKK ++
Sbjct: 553 FNFLINKKDQM 563
Score = 73.9 bits (180), Expect(2) = 4e-40
Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Frame = -1
Query: 832 PKESASKPDQ---VTVDAGEGCIDSDASQITRGAS**ANEKERG*R*RKDQRFGQGEREG 662
P + A + DQ V DA E +DS + + R +++E+ KD +G+
Sbjct: 395 PTDLAPEADQSQSVNQDAAEISVDSCSPREGRSNEKGKDKEEKEKEKSKDPDKEKGKE-- 452
Query: 661 KDAERKGEHEKEKVKGFEGMNLDALLQRFSGCVSCDFIDQLTV 533
+DA+RKGE+EKEK+KG EG NLD LLQR GCVS D IDQLTV
Sbjct: 453 RDADRKGENEKEKLKGLEGTNLDGLLQRLPGCVSRDLIDQLTV 495
>ref|XP_003595517.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484565|gb|AES65768.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 1705
Score = 112 bits (281), Expect(2) = 2e-39
Identities = 55/71 (77%), Positives = 65/71 (91%)
Frame = -3
Query: 449 MQVEFSYLNSKSNRKRLVCALFNVPRTSLELLPYYSRMVATLSTCMKDISSMLLKNLEEE 270
+ VEF YLNSKSNRK+LV ALF+VPRTSLELL YYSRMVATLSTCMKD+SS+LL+ LEEE
Sbjct: 494 LTVEFCYLNSKSNRKKLVRALFSVPRTSLELLAYYSRMVATLSTCMKDVSSLLLQMLEEE 553
Query: 269 FNYLMNKKSKL 237
FN+L+NKK ++
Sbjct: 554 FNFLINKKDQM 564
Score = 77.8 bits (190), Expect(2) = 2e-39
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Frame = -1
Query: 820 ASKPDQVTVDAGEGCIDSDASQITRG-AS**ANEKERG*R*RKDQRFGQGEREGKDAERK 644
+ K VT+D+GE + +++S + G +S N+KE + ++ R + E+E K+ E+K
Sbjct: 403 SDKSQLVTLDSGE--VSTESSVLPEGESSEIVNDKEEKEKSKELDRDKEKEKE-KEGEKK 459
Query: 643 GEHEKEKVKGFEGMNLDALLQRFSGCVSCDFIDQLTV 533
GEHEKEK++ EG NLDALLQR GCVS D IDQLTV
Sbjct: 460 GEHEKEKLRSLEGTNLDALLQRLPGCVSRDLIDQLTV 496
>gb|ABD32424.2| Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2
[Medicago truncatula]
Length = 1212
Score = 112 bits (281), Expect(2) = 2e-39
Identities = 55/71 (77%), Positives = 65/71 (91%)
Frame = -3
Query: 449 MQVEFSYLNSKSNRKRLVCALFNVPRTSLELLPYYSRMVATLSTCMKDISSMLLKNLEEE 270
+ VEF YLNSKSNRK+LV ALF+VPRTSLELL YYSRMVATLSTCMKD+SS+LL+ LEEE
Sbjct: 494 LTVEFCYLNSKSNRKKLVRALFSVPRTSLELLAYYSRMVATLSTCMKDVSSLLLQMLEEE 553
Query: 269 FNYLMNKKSKL 237
FN+L+NKK ++
Sbjct: 554 FNFLINKKDQM 564
Score = 77.8 bits (190), Expect(2) = 2e-39
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Frame = -1
Query: 820 ASKPDQVTVDAGEGCIDSDASQITRG-AS**ANEKERG*R*RKDQRFGQGEREGKDAERK 644
+ K VT+D+GE + +++S + G +S N+KE + ++ R + E+E K+ E+K
Sbjct: 403 SDKSQLVTLDSGE--VSTESSVLPEGESSEIVNDKEEKEKSKELDRDKEKEKE-KEGEKK 459
Query: 643 GEHEKEKVKGFEGMNLDALLQRFSGCVSCDFIDQLTV 533
GEHEKEK++ EG NLDALLQR GCVS D IDQLTV
Sbjct: 460 GEHEKEKLRSLEGTNLDALLQRLPGCVSRDLIDQLTV 496