BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00001609
         (1312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283959.1| PREDICTED: replication protein A 70 kDa DNA-...   587   e-165
emb|CAN71402.1| hypothetical protein VITISV_006284 [Vitis vinifera]   578   e-162
emb|CBI15109.3| unnamed protein product [Vitis vinifera]              574   e-161
ref|XP_002514651.1| replication factor A 1, rfa1, putative [Rici...   573   e-161
ref|XP_003524615.1| PREDICTED: replication protein A 70 kDa DNA-...   563   e-158

>ref|XP_002283959.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform 1
            [Vitis vinifera]
          Length = 625

 Score =  587 bits (1512), Expect = e-165
 Identities = 292/427 (68%), Positives = 354/427 (82%), Gaps = 13/427 (3%)
 Frame = -2

Query: 1242 MTQSVTQNAISTIIANPSPTSPSELPDLVVQVVDIKRVGNRYRFDASDGDMKLKAMLASE 1063
            M +S+T N ISTI++NPSP S +ELP+++VQV+D+  +GNRY+F A+DG MKLKAM  S 
Sbjct: 1    MAKSITPNGISTILSNPSPDSSTELPEIIVQVIDLTPIGNRYKFTANDGKMKLKAMFPSS 60

Query: 1062 LAAEVELGNLQNLGLIRVLDYTVNVV--KDQKVLIINKCKVVTPVLEMEIKNEGSKEGTG 889
             ++E+  GN+QNLGLI+V+DYT+N +  K +K LI+ KC+ V+P LE+E K E   E TG
Sbjct: 61   FSSEINSGNIQNLGLIQVIDYTLNDIPSKQEKYLIVTKCEAVSPALEVEFKTEVKSEETG 120

Query: 888  FVSKPKQDIGIQ-----------LKPKQEMVTKSAAEILHEQHGNMAPSARMGISRRVYP 742
             + +PKQ + IQ           LKPKQE+V KSAA+I++EQHGNMAP+ARM ++RRV+P
Sbjct: 121  ILLRPKQVVEIQREVKTEGTGIFLKPKQEIVAKSAAQIVNEQHGNMAPAARMAMTRRVHP 180

Query: 741  LVALNPYNGNWTIKVRVTSKGNLRSYRNARGEGQVFNVELTDQDGTQIQATMFNEAAQKF 562
            LV+LNPY GNWTIKVR+T+KG +R+Y+NARGEG VFNVELTD+DGTQIQATMFNEAA+KF
Sbjct: 181  LVSLNPYQGNWTIKVRLTNKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKF 240

Query: 561  YNKFELGKVYYISKGILKLANKQFKTVQNDYEMTLNENSIVEEVTEEGTFIPQPVFNFVP 382
            Y KF+LGKVYYISKG LK+ANKQFKTVQNDYEMTLNENS VEE + E TFIP+  F FV 
Sbjct: 241  YEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETFIPEAKFKFVE 300

Query: 381  IDQLGSYVNGRELVDVIGVVQSVSPTLSIRRKLDNETIPKRDITIADDSKKTVVVSLWND 202
            I++LG YVNG+ELVDVIGVVQSVSPT+SIRRK +N+ +PKRDITIAD +KKTVVVSLWND
Sbjct: 301  IEELGPYVNGKELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADKTKKTVVVSLWND 360

Query: 201  FATHIGQELLDAVDSAPIVAIKSLKVGDFQGVSLSTLGKSNVLMNPDVPETKKLRSWYNS 22
             AT++GQELLD  D  PIVAIKSLKVGDFQGVSLSTL KS VL+NPD PE+KKLRSWY+S
Sbjct: 361  HATNVGQELLDNADKFPIVAIKSLKVGDFQGVSLSTLSKSIVLVNPDTPESKKLRSWYDS 420

Query: 21   EGKETSM 1
            EGK  SM
Sbjct: 421  EGKGASM 427


>emb|CAN71402.1| hypothetical protein VITISV_006284 [Vitis vinifera]
          Length = 634

 Score =  578 bits (1489), Expect = e-162
 Identities = 292/436 (66%), Positives = 353/436 (80%), Gaps = 22/436 (5%)
 Frame = -2

Query: 1242 MTQSVTQNAISTIIANPSPTSPSELPDLVVQVVDIKRVGNRYRFDASDGDMKLKAMLASE 1063
            M +S+T N ISTI++NPSP S +ELP+++VQV+D+  +GNRY+F A+DG MKLKAM  S 
Sbjct: 1    MAKSITPNGISTILSNPSPDSSTELPEIIVQVIDLTPIGNRYKFTANDGKMKLKAMFPSS 60

Query: 1062 LAAEVELGNLQNLGLIRVLDYTVNVV--KDQKVLIINKCKVVTPVLEMEIKNEGSKEGTG 889
             ++E+  GN+QNLGLI+V+DYT+N +  K +K LI+ KC+ V+P LE+E K E   E TG
Sbjct: 61   FSSEINSGNIQNLGLIQVIDYTLNDIPSKQEKYLIVTKCEAVSPALEVEFKTEVKSEETG 120

Query: 888  FVSKPKQDIGIQ-----------LKPKQEMVTKSAAEILHEQHGNMAPSARMGISRRVYP 742
             +  PKQ + IQ           LKPKQE+V KSAA+I++EQHGNMAP+ARM ++RRV+P
Sbjct: 121  ILLXPKQVVEIQXEVKXEGTGIFLKPKQEIVAKSAAQIVNEQHGNMAPAARMAMTRRVHP 180

Query: 741  LVALNPYNGNWTIKVRVTSKGNLRSYRNARGEGQVFNVELTDQDGTQIQATMFNEAAQKF 562
            LV+LNPY GNWTIKVR+T+KG +R+Y+NARGEG VFNVELTD+DGTQIQATMFNEAA+KF
Sbjct: 181  LVSLNPYQGNWTIKVRLTNKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKF 240

Query: 561  YNKFELGKVYYISKGILKLANKQFKTVQNDYEMTLNENSIVEEVTEEGTFIPQPVFNFVP 382
            Y KF+LGKVYYISKG LK+ANKQFKTVQNDYEMTLNENS VEE + E TFIP+  F FV 
Sbjct: 241  YEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETFIPEAKFKFVE 300

Query: 381  IDQLGSYVNGRELV---------DVIGVVQSVSPTLSIRRKLDNETIPKRDITIADDSKK 229
            I++LG YVNG+ELV         DVIGVVQSVSPT+SIRRK +N+ +PKRDITIAD +KK
Sbjct: 301  IEELGPYVNGKELVGPLTSLLIPDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADKTKK 360

Query: 228  TVVVSLWNDFATHIGQELLDAVDSAPIVAIKSLKVGDFQGVSLSTLGKSNVLMNPDVPET 49
            TVVVSLWND AT++GQELLD  D  PIVAIKSLKVGDFQGVSLSTL KS VL+NPD PE+
Sbjct: 361  TVVVSLWNDHATNVGQELLDNADKFPIVAIKSLKVGDFQGVSLSTLSKSIVLVNPDTPES 420

Query: 48   KKLRSWYNSEGKETSM 1
            KKLRSWY+SEGK  SM
Sbjct: 421  KKLRSWYDSEGKGASM 436


>emb|CBI15109.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  574 bits (1480), Expect = e-161
 Identities = 286/416 (68%), Positives = 346/416 (83%), Gaps = 2/416 (0%)
 Frame = -2

Query: 1242 MTQSVTQNAISTIIANPSPTSPSELPDLVVQVVDIKRVGNRYRFDASDGDMKLKAMLASE 1063
            M +S+T N ISTI++NPSP S +ELP+++VQV+D+  +GNRY+F A+DG MKLKAM  S 
Sbjct: 1    MAKSITPNGISTILSNPSPDSSTELPEIIVQVIDLTPIGNRYKFTANDGKMKLKAMFPSS 60

Query: 1062 LAAEVELGNLQNLGLIRVLDYTVNVV--KDQKVLIINKCKVVTPVLEMEIKNEGSKEGTG 889
             ++E+  GN+QNLGLI+V+DYT+N +  K +K LI+ KC+ V+P LE+E K E  + G  
Sbjct: 61   FSSEINSGNIQNLGLIQVIDYTLNDIPSKQEKYLIVTKCEAVSPALEVEFKTEVKRTG-- 118

Query: 888  FVSKPKQDIGIQLKPKQEMVTKSAAEILHEQHGNMAPSARMGISRRVYPLVALNPYNGNW 709
                      I LKPKQE+V KSAA+I++EQHGNMAP+ARM ++RRV+PLV+LNPY GNW
Sbjct: 119  ----------IFLKPKQEIVAKSAAQIVNEQHGNMAPAARMAMTRRVHPLVSLNPYQGNW 168

Query: 708  TIKVRVTSKGNLRSYRNARGEGQVFNVELTDQDGTQIQATMFNEAAQKFYNKFELGKVYY 529
            TIKVR+T+KG +R+Y+NARGEG VFNVELTD+DGTQIQATMFNEAA+KFY KF+LGKVYY
Sbjct: 169  TIKVRLTNKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFQLGKVYY 228

Query: 528  ISKGILKLANKQFKTVQNDYEMTLNENSIVEEVTEEGTFIPQPVFNFVPIDQLGSYVNGR 349
            ISKG LK+ANKQFKTVQNDYEMTLNENS VEE + E TFIP+  F FV I++LG YVNG+
Sbjct: 229  ISKGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETFIPEAKFKFVEIEELGPYVNGK 288

Query: 348  ELVDVIGVVQSVSPTLSIRRKLDNETIPKRDITIADDSKKTVVVSLWNDFATHIGQELLD 169
            ELVDVIGVVQSVSPT+SIRRK +N+ +PKRDITIAD +KKTVVVSLWND AT++GQELLD
Sbjct: 289  ELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADKTKKTVVVSLWNDHATNVGQELLD 348

Query: 168  AVDSAPIVAIKSLKVGDFQGVSLSTLGKSNVLMNPDVPETKKLRSWYNSEGKETSM 1
              D  PIVAIKSLKVGDFQGVSLSTL KS VL+NPD PE+KKLRSWY+SEGK  SM
Sbjct: 349  NADKFPIVAIKSLKVGDFQGVSLSTLSKSIVLVNPDTPESKKLRSWYDSEGKGASM 404


>ref|XP_002514651.1| replication factor A 1, rfa1, putative [Ricinus communis]
            gi|223546255|gb|EEF47757.1| replication factor A 1, rfa1,
            putative [Ricinus communis]
          Length = 622

 Score =  573 bits (1476), Expect = e-161
 Identities = 283/425 (66%), Positives = 350/425 (82%), Gaps = 11/425 (2%)
 Frame = -2

Query: 1242 MTQSVTQNAISTIIANPSPTSPSELPDLVVQVVDIKRVGNRYRFDASDGDMKLKAMLASE 1063
            M + V+ +AI+ +++NP P S S++P+++VQ+ +++  G  Y FDA+DG  K+KA+  S 
Sbjct: 1    MGKRVSPDAIAALLSNPKPDSISDIPEIIVQITNLEPKGKSYGFDANDGKRKIKAIFNSR 60

Query: 1062 LAAEVELGNLQNLGLIRVLDYTVNVV--KDQKVLIINKCKVVTPVLEMEIKNEGSKEGTG 889
            L+ E+  GN+QNLGLIR+LDYTVN +  K +  LII KC+VV+P LEMEIK+E   E   
Sbjct: 61   LSTEIISGNIQNLGLIRILDYTVNEIPSKSENYLIITKCEVVSPALEMEIKDEAKTEEAA 120

Query: 888  FVSKPKQDI---------GIQLKPKQEMVTKSAAEILHEQHGNMAPSARMGISRRVYPLV 736
               KPKQ+          GI LKPKQEMV KSAA+I+HEQH NMAP+ARM ++RRV+PLV
Sbjct: 121  ITLKPKQETQVIKQEVSGGILLKPKQEMVAKSAAQIVHEQHKNMAPTARMAMTRRVHPLV 180

Query: 735  ALNPYNGNWTIKVRVTSKGNLRSYRNARGEGQVFNVELTDQDGTQIQATMFNEAAQKFYN 556
            +LNPY GNWTIKVRVTSKGN+R+Y+NARGEG VFNVELTD+DGTQIQATMFNEAA+KFY+
Sbjct: 181  SLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYD 240

Query: 555  KFELGKVYYISKGILKLANKQFKTVQNDYEMTLNENSIVEEVTEEGTFIPQPVFNFVPID 376
            KF+LGKVYYISKG LK+ANKQF+TVQNDYEM LNENS VEE ++E  FIP+  FNFVPID
Sbjct: 241  KFQLGKVYYISKGSLKVANKQFRTVQNDYEMNLNENSQVEEASDEAAFIPETKFNFVPID 300

Query: 375  QLGSYVNGRELVDVIGVVQSVSPTLSIRRKLDNETIPKRDITIADDSKKTVVVSLWNDFA 196
            QLG YV+  ELVDVIGVVQSVSPT+SIRRK +N+ +PKRDITIAD++KKTVVVSLWND A
Sbjct: 301  QLGPYVSTNELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADETKKTVVVSLWNDLA 360

Query: 195  THIGQELLDAVDSAPIVAIKSLKVGDFQGVSLSTLGKSNVLMNPDVPETKKLRSWYNSEG 16
            T +GQELLD  D +P+VAIK+LKVGDFQGVSLSTLG+S + +NPD PE+KKL+SW++SEG
Sbjct: 361  TDVGQELLDMADKSPVVAIKALKVGDFQGVSLSTLGRSIIQVNPDTPESKKLKSWFDSEG 420

Query: 15   KETSM 1
            KETS+
Sbjct: 421  KETSL 425


>ref|XP_003524615.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
            [Glycine max]
          Length = 620

 Score =  563 bits (1452), Expect = e-158
 Identities = 287/423 (67%), Positives = 349/423 (82%), Gaps = 11/423 (2%)
 Frame = -2

Query: 1236 QSVTQNAISTIIANPSPTSPSELPDLVVQVVDIKRVGNRYRFDASDGDMKLKAMLASELA 1057
            ++VT +A+ST++ANPSP S S+LPD+VVQV+D+K  GN+Y F A+DG  KLKAM+ S++ 
Sbjct: 4    KTVTPDAVSTLLANPSPDSTSDLPDIVVQVLDLKATGNKYMFTANDGKTKLKAMIPSDMR 63

Query: 1056 AEVELGNLQNLGLIRVLDYTVNVV--KDQKVLIINKCKVVTPVLEMEIKNEGSKEGTGFV 883
            ++V  G +QNLGLIRVLDYTVN +  K  K L+  KC+ V+P LEMEIK+E S  G+G +
Sbjct: 64   SQVLSGAIQNLGLIRVLDYTVNDIPNKSDKYLLAIKCEAVSPALEMEIKSEES--GSGIL 121

Query: 882  SKPKQD---------IGIQLKPKQEMVTKSAAEILHEQHGNMAPSARMGISRRVYPLVAL 730
             KPK +          GI LKPKQE+VTKSA +IL EQHGN AP+ARM ++RRV PLV+L
Sbjct: 122  LKPKVEGGVKTEGAAAGILLKPKQEVVTKSANQILREQHGNSAPAARMAMTRRVRPLVSL 181

Query: 729  NPYNGNWTIKVRVTSKGNLRSYRNARGEGQVFNVELTDQDGTQIQATMFNEAAQKFYNKF 550
            NPY GNWTIKV VTSKGN+R+Y+NARG+G VFNVELTD+DGTQIQATMFN AA+KF++KF
Sbjct: 182  NPYQGNWTIKVSVTSKGNMRTYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKFFDKF 241

Query: 549  ELGKVYYISKGILKLANKQFKTVQNDYEMTLNENSIVEEVTEEGTFIPQPVFNFVPIDQL 370
             LGKVYYIS+G LK+ANKQFKTVQNDYEMTLNENS VEEV  E +F+P+  FNFV IDQL
Sbjct: 242  VLGKVYYISRGTLKVANKQFKTVQNDYEMTLNENSEVEEVVGEASFVPETKFNFVQIDQL 301

Query: 369  GSYVNGRELVDVIGVVQSVSPTLSIRRKLDNETIPKRDITIADDSKKTVVVSLWNDFATH 190
            G +VN  ELVDVIGVV++VS T+SIRRK DNE+IPKRDITIADD+KKTVVVSLWN+ AT 
Sbjct: 302  GPHVNKSELVDVIGVVKNVSSTMSIRRKSDNESIPKRDITIADDTKKTVVVSLWNELATT 361

Query: 189  IGQELLDAVDSAPIVAIKSLKVGDFQGVSLSTLGKSNVLMNPDVPETKKLRSWYNSEGKE 10
             G+ELLD VD +P+VAIKSLKVGDFQGVSLST+G+S VL+NPD+PE K LRSWY+ EGK+
Sbjct: 362  TGEELLDIVDKSPVVAIKSLKVGDFQGVSLSTIGRSVVLVNPDIPEAKNLRSWYDFEGKD 421

Query: 9    TSM 1
             +M
Sbjct: 422  AAM 424