BLASTX nr result
ID: Cimicifuga21_contig00001352
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00001352
(3999 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264290.1| PREDICTED: transcription initiation factor T... 420 e-114
ref|XP_003518649.1| PREDICTED: transcription initiation factor T... 417 e-114
emb|CBI26708.3| unnamed protein product [Vitis vinifera] 411 e-112
ref|XP_002276969.1| PREDICTED: transcription initiation factor T... 411 e-112
ref|NP_001043168.1| Os01g0510800 [Oryza sativa Japonica Group] g... 410 e-111
>ref|XP_002264290.1| PREDICTED: transcription initiation factor TFIID subunit 6 [Vitis
vinifera] gi|297739126|emb|CBI28777.3| unnamed protein
product [Vitis vinifera]
Length = 543
Score = 420 bits (1080), Expect = e-114
Identities = 210/247 (85%), Positives = 227/247 (91%)
Frame = +2
Query: 2321 MSIVPKETIEVIAQSIGINNLSSDVALALAPDVEYRVREIMQEAIKCMRHSKRTILTADD 2500
MSIV KETIEVIAQSIGI NLS+DVALALAPDVEYR+RE+MQEAIKCMRHSKRT+LT DD
Sbjct: 1 MSIVSKETIEVIAQSIGIANLSADVALALAPDVEYRMREVMQEAIKCMRHSKRTVLTTDD 60
Query: 2501 VDSALNLRNVEPIYGFASGDPLRFKRAVGHKDLFYIDDKEVEFKDVIEAPIPKAPLDTAV 2680
VD ALNLRNVEPIYGF SG PLRFKRAVGHK+LFYIDDK+++FKDVIEAP+PKAPLD AV
Sbjct: 61 VDIALNLRNVEPIYGFTSGGPLRFKRAVGHKNLFYIDDKDLDFKDVIEAPLPKAPLDAAV 120
Query: 2681 VAHWLAIEGVQPAIPENAPVEALVAPSDTRKSEHKEDGLPVEIKLPIKHVLSRELQLYFD 2860
V HWLAIEGVQPAIPENAPVE + APSD +K E K+DGLPV+IKLPIKHVLSRELQLYFD
Sbjct: 121 VCHWLAIEGVQPAIPENAPVEVIAAPSDGKKFEQKDDGLPVDIKLPIKHVLSRELQLYFD 180
Query: 2861 KITELTVTRSDSVLFKEALSSLATDSGLHPLVPYFTYFISDEITRSLNDFPLLFALMRLV 3040
KI +LTV RSDS LFKEAL SLATDSGLHPLVPYFTYFISDE++R LNDF LLFALMR+V
Sbjct: 181 KIIDLTVNRSDSALFKEALVSLATDSGLHPLVPYFTYFISDEVSRGLNDFNLLFALMRVV 240
Query: 3041 RSLLQNP 3061
SLLQNP
Sbjct: 241 WSLLQNP 247
Score = 300 bits (768), Expect = 2e-78
Identities = 159/270 (58%), Positives = 189/270 (70%), Gaps = 8/270 (2%)
Frame = +1
Query: 3178 ICKRFGHVYHNLQPRVTRTLLHAFLDPTKAMTQHYGAIQGLATLGPSVIRLLILPNLEPY 3357
ICKRFGHVY+NLQ R+T+TLLHAFLDP ++MTQHYGAIQGLA LGP+++RLLI+PNLEPY
Sbjct: 293 ICKRFGHVYNNLQTRLTKTLLHAFLDPKRSMTQHYGAIQGLAALGPNMVRLLIVPNLEPY 352
Query: 3358 LQLLEPEMLLEKQKNEMKRHEAWRVYGALLCAAGQCMYDRLKLFPGLLSPPARTVWRTNG 3537
L+LLEPEMLLEKQKNE+KRHEAW VYGALL A GQ +YDRLK+FP L SPPAR V+RTNG
Sbjct: 353 LRLLEPEMLLEKQKNELKRHEAWCVYGALLRATGQSIYDRLKMFPALPSPPAR-VFRTNG 411
Query: 3538 RVVTTMPNKRKMSLDHSAQQPPLKKVATEGLVGAVPAAADG--------FPSTSVDSIMA 3693
RVVT+ PNKRK + +H QQP LKK+AT+G + VP P S D M
Sbjct: 412 RVVTSPPNKRKANNEHLEQQPSLKKIATDGPMDVVPTNLSSNMQPPETKGPVPSTDPDMG 471
Query: 3694 SSSSFRQAKNESSSGGXXXXXXXXXXXXXXXXXSSSRREKGEGRPPKMSIALAQAWKEDM 3873
SSS RQ + + S S R+ KG+ R KMS L Q W++D+
Sbjct: 472 PSSSSRQIPHGNIS------------------DSRDRKGKGDSRALKMSAVLTQTWRDDL 513
Query: 3874 DAGHLMASLFEFFGESILPFTPTAELSFFL 3963
+GHL+ SLFE FGESILPF P E+S FL
Sbjct: 514 KSGHLLVSLFELFGESILPFIPAPEMSLFL 543
>ref|XP_003518649.1| PREDICTED: transcription initiation factor TFIID subunit 6-like
[Glycine max]
Length = 544
Score = 417 bits (1073), Expect = e-114
Identities = 206/247 (83%), Positives = 228/247 (92%)
Frame = +2
Query: 2321 MSIVPKETIEVIAQSIGINNLSSDVALALAPDVEYRVREIMQEAIKCMRHSKRTILTADD 2500
MSIVPKETIEVIAQSIGINNLS DVALA+APDVEYR+R+IMQEAIKCMRHSKRT LTADD
Sbjct: 1 MSIVPKETIEVIAQSIGINNLSHDVALAVAPDVEYRMRQIMQEAIKCMRHSKRTTLTADD 60
Query: 2501 VDSALNLRNVEPIYGFASGDPLRFKRAVGHKDLFYIDDKEVEFKDVIEAPIPKAPLDTAV 2680
VD+ALNL+NVEPIYGFASG PLRFKRAVGH+DLFYIDDK+V+ KDVIEA +PKAPLDTAV
Sbjct: 61 VDAALNLKNVEPIYGFASGGPLRFKRAVGHRDLFYIDDKDVDLKDVIEASLPKAPLDTAV 120
Query: 2681 VAHWLAIEGVQPAIPENAPVEALVAPSDTRKSEHKEDGLPVEIKLPIKHVLSRELQLYFD 2860
HWLAIEGVQPAIPENAPVE + APSD +K E K+D LPV+IKLP+KHVLSRELQLYFD
Sbjct: 121 TCHWLAIEGVQPAIPENAPVEVISAPSDVKKHEQKDDNLPVDIKLPVKHVLSRELQLYFD 180
Query: 2861 KITELTVTRSDSVLFKEALSSLATDSGLHPLVPYFTYFISDEITRSLNDFPLLFALMRLV 3040
K+ ELT++ SDSVLFKEAL SLATDSGLHPLVPYFT FI+DE++R LN+FPLLFALMR+V
Sbjct: 181 KVAELTLSESDSVLFKEALVSLATDSGLHPLVPYFTCFIADEVSRGLNNFPLLFALMRVV 240
Query: 3041 RSLLQNP 3061
SLLQNP
Sbjct: 241 SSLLQNP 247
Score = 283 bits (725), Expect = 2e-73
Identities = 149/270 (55%), Positives = 182/270 (67%), Gaps = 8/270 (2%)
Frame = +1
Query: 3178 ICKRFGHVYHNLQPRVTRTLLHAFLDPTKAMTQHYGAIQGLATLGPSVIRLLILPNLEPY 3357
ICKRFGHVY NLQ R+T+TLL+AFLDP KA+TQHYGAIQGL LGP+V+RLL+LPNLE Y
Sbjct: 293 ICKRFGHVYSNLQSRLTKTLLNAFLDPKKALTQHYGAIQGLGALGPNVVRLLLLPNLETY 352
Query: 3358 LQLLEPEMLLEKQKNEMKRHEAWRVYGALLCAAGQCMYDRLKLFPGLLSPPARTVWRTNG 3537
+QLLEPEMLLEKQKNE+KRHEAWRVYGALL AAGQC+YDRLK+FP SPP VW+TN
Sbjct: 353 MQLLEPEMLLEKQKNELKRHEAWRVYGALLRAAGQCIYDRLKIFPTFPSPPLHAVWKTNS 412
Query: 3538 RVVTTMPNKRKMSLDHSAQQPPLKKVATEGLVG--------AVPAAADGFPSTSVDSIMA 3693
+V+T+ KRK S D QQPPLKK AT+G VG G ++S DSI+
Sbjct: 413 KVLTSSTYKRKASPDQLEQQPPLKKAATDGEVGVDLMNFSPVHKQEEAGTQASSADSIIG 472
Query: 3694 SSSSFRQAKNESSSGGXXXXXXXXXXXXXXXXXSSSRREKGEGRPPKMSIALAQAWKEDM 3873
+SSS Q KNE++ G R ++G+ + K S AL Q WK+++
Sbjct: 473 TSSSSAQMKNETTLDG------------------ELRGKRGDTQALKTSAALTQVWKDEL 514
Query: 3874 DAGHLMASLFEFFGESILPFTPTAELSFFL 3963
++G + SLFE FGE IL F E+ FL
Sbjct: 515 NSGRTLVSLFELFGEGILSFIKAPEMYMFL 544
>emb|CBI26708.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 411 bits (1057), Expect = e-112
Identities = 201/246 (81%), Positives = 224/246 (91%)
Frame = +2
Query: 2321 MSIVPKETIEVIAQSIGINNLSSDVALALAPDVEYRVREIMQEAIKCMRHSKRTILTADD 2500
MSIVPKETIEVIAQSIGI+N S DVA ALA DVEYRVREIMQEAIKCMRHSKRTILT +D
Sbjct: 1 MSIVPKETIEVIAQSIGISNFSPDVAPALATDVEYRVREIMQEAIKCMRHSKRTILTVND 60
Query: 2501 VDSALNLRNVEPIYGFASGDPLRFKRAVGHKDLFYIDDKEVEFKDVIEAPIPKAPLDTAV 2680
VDSAL LRNVEP+YGF SG P +FKRA GHKDLFY+DDK+VEFKD+IEAP+PK PLDT V
Sbjct: 61 VDSALKLRNVEPLYGFTSGGPRQFKRAAGHKDLFYVDDKDVEFKDLIEAPLPKTPLDTGV 120
Query: 2681 VAHWLAIEGVQPAIPENAPVEALVAPSDTRKSEHKEDGLPVEIKLPIKHVLSRELQLYFD 2860
+ HWLAIEGVQPAI ENAP+EAL PSD +KSE+KEDGLPV+ KLP+KHVLSRELQLYFD
Sbjct: 121 ITHWLAIEGVQPAISENAPIEALAVPSDNKKSEYKEDGLPVDTKLPVKHVLSRELQLYFD 180
Query: 2861 KITELTVTRSDSVLFKEALSSLATDSGLHPLVPYFTYFISDEITRSLNDFPLLFALMRLV 3040
KI ELT++RSDS+LFKEAL SLATDSG+HPLVPYFTYFI+DE+TR+LNDF +LFALMR+
Sbjct: 181 KIKELTLSRSDSILFKEALVSLATDSGIHPLVPYFTYFIADEVTRNLNDFSILFALMRVA 240
Query: 3041 RSLLQN 3058
RSLLQN
Sbjct: 241 RSLLQN 246
Score = 296 bits (759), Expect = 2e-77
Identities = 163/277 (58%), Positives = 191/277 (68%), Gaps = 15/277 (5%)
Frame = +1
Query: 3178 ICKRFGHVYHNLQPRVTRTLLHAFLDPTKAMTQHYGAIQGLATLGPSVIRLLILPNLEPY 3357
+CKR+GHVYHNLQPRVTRTLLHAFLDPTKA+ QHYGAIQGLA GPSV+RLLILPNLEPY
Sbjct: 293 VCKRYGHVYHNLQPRVTRTLLHAFLDPTKALPQHYGAIQGLAAFGPSVVRLLILPNLEPY 352
Query: 3358 LQLLEPEMLLEKQKNEMKRHEAWRVYGALLCAAGQCMYDRLKLFPGLLSPPARTVWRTNG 3537
L+LLEPEM LEKQKN MKRHEAWRVYGALLCAAG CMYDRLK FP LLSPP R + ++N
Sbjct: 353 LRLLEPEMQLEKQKNGMKRHEAWRVYGALLCAAGTCMYDRLKTFPNLLSPPTRAILKSNK 412
Query: 3538 RVVTTM----PNKRKMSLDHSAQQPPLKKVATEGLVGAVP---------AAADGFPSTSV 3678
+++ T P KRK S D+ QQPPLKK+AT+G +G +P GF +++
Sbjct: 413 KILPTKPKINPGKRKASTDNLMQQPPLKKLATDGSMGVMPINSLAVDKQGLTGGFSTSTA 472
Query: 3679 --DSIMASSSSFRQAKNESSSGGXXXXXXXXXXXXXXXXXSSSRREKGEGRPPKMSIALA 3852
S + SS +Q +E+ SGG RRE G R K S LA
Sbjct: 473 VGSSDVGLSSMSQQLASENISGG--------------------RREVGT-RALKASAVLA 511
Query: 3853 QAWKEDMDAGHLMASLFEFFGESILPFTPTAELSFFL 3963
QAWK D++AG L ASLFE+FGES+ FTP+ ELS FL
Sbjct: 512 QAWK-DVNAGQLSASLFEYFGESMFCFTPSPELSLFL 547
>ref|XP_002276969.1| PREDICTED: transcription initiation factor TFIID subunit 6-like
[Vitis vinifera]
Length = 543
Score = 411 bits (1057), Expect = e-112
Identities = 201/246 (81%), Positives = 224/246 (91%)
Frame = +2
Query: 2321 MSIVPKETIEVIAQSIGINNLSSDVALALAPDVEYRVREIMQEAIKCMRHSKRTILTADD 2500
MSIVPKETIEVIAQSIGI+N S DVA ALA DVEYRVREIMQEAIKCMRHSKRTILT +D
Sbjct: 1 MSIVPKETIEVIAQSIGISNFSPDVAPALATDVEYRVREIMQEAIKCMRHSKRTILTVND 60
Query: 2501 VDSALNLRNVEPIYGFASGDPLRFKRAVGHKDLFYIDDKEVEFKDVIEAPIPKAPLDTAV 2680
VDSAL LRNVEP+YGF SG P +FKRA GHKDLFY+DDK+VEFKD+IEAP+PK PLDT V
Sbjct: 61 VDSALKLRNVEPLYGFTSGGPRQFKRAAGHKDLFYVDDKDVEFKDLIEAPLPKTPLDTGV 120
Query: 2681 VAHWLAIEGVQPAIPENAPVEALVAPSDTRKSEHKEDGLPVEIKLPIKHVLSRELQLYFD 2860
+ HWLAIEGVQPAI ENAP+EAL PSD +KSE+KEDGLPV+ KLP+KHVLSRELQLYFD
Sbjct: 121 ITHWLAIEGVQPAISENAPIEALAVPSDNKKSEYKEDGLPVDTKLPVKHVLSRELQLYFD 180
Query: 2861 KITELTVTRSDSVLFKEALSSLATDSGLHPLVPYFTYFISDEITRSLNDFPLLFALMRLV 3040
KI ELT++RSDS+LFKEAL SLATDSG+HPLVPYFTYFI+DE+TR+LNDF +LFALMR+
Sbjct: 181 KIKELTLSRSDSILFKEALVSLATDSGIHPLVPYFTYFIADEVTRNLNDFSILFALMRVA 240
Query: 3041 RSLLQN 3058
RSLLQN
Sbjct: 241 RSLLQN 246
Score = 303 bits (775), Expect = 3e-79
Identities = 163/273 (59%), Positives = 192/273 (70%), Gaps = 11/273 (4%)
Frame = +1
Query: 3178 ICKRFGHVYHNLQPRVTRTLLHAFLDPTKAMTQHYGAIQGLATLGPSVIRLLILPNLEPY 3357
+CKR+GHVYHNLQPRVTRTLLHAFLDPTKA+ QHYGAIQGLA GPSV+RLLILPNLEPY
Sbjct: 293 VCKRYGHVYHNLQPRVTRTLLHAFLDPTKALPQHYGAIQGLAAFGPSVVRLLILPNLEPY 352
Query: 3358 LQLLEPEMLLEKQKNEMKRHEAWRVYGALLCAAGQCMYDRLKLFPGLLSPPARTVWRTNG 3537
L+LLEPEM LEKQKN MKRHEAWRVYGALLCAAG CMYDRLK FP LLSPP R + ++N
Sbjct: 353 LRLLEPEMQLEKQKNGMKRHEAWRVYGALLCAAGTCMYDRLKTFPNLLSPPTRAILKSNK 412
Query: 3538 RVVTTMPNKRKMSLDHSAQQPPLKKVATEGLVGAVP---------AAADGFPSTSV--DS 3684
+++ T P+KRK S D+ QQPPLKK+AT+G +G +P GF +++ S
Sbjct: 413 KILPTKPSKRKASTDNLMQQPPLKKLATDGSMGVMPINSLAVDKQGLTGGFSTSTAVGSS 472
Query: 3685 IMASSSSFRQAKNESSSGGXXXXXXXXXXXXXXXXXSSSRREKGEGRPPKMSIALAQAWK 3864
+ SS +Q +E+ SGG RRE G R K S LAQAWK
Sbjct: 473 DVGLSSMSQQLASENISGG--------------------RREVGT-RALKASAVLAQAWK 511
Query: 3865 EDMDAGHLMASLFEFFGESILPFTPTAELSFFL 3963
D++AG L ASLFE+FGES+ FTP+ ELS FL
Sbjct: 512 -DVNAGQLSASLFEYFGESMFCFTPSPELSLFL 543
>ref|NP_001043168.1| Os01g0510800 [Oryza sativa Japonica Group]
gi|20804496|dbj|BAB92191.1| putative TAF6 [Oryza sativa
Japonica Group] gi|113532699|dbj|BAF05082.1| Os01g0510800
[Oryza sativa Japonica Group]
gi|215768003|dbj|BAH00232.1| unnamed protein product
[Oryza sativa Japonica Group] gi|222618539|gb|EEE54671.1|
hypothetical protein OsJ_01969 [Oryza sativa Japonica
Group]
Length = 541
Score = 410 bits (1055), Expect = e-111
Identities = 197/248 (79%), Positives = 234/248 (94%), Gaps = 1/248 (0%)
Frame = +2
Query: 2321 MSIVPKETIEVIAQSIGINNLSSDVALALAPDVEYRVREIMQEAIKCMRHSKRTILTADD 2500
MSIVPKETIEVI QS+GI NL +DV+ ALAPDVEYR+REIMQEAIKCMRH+KRT+LTADD
Sbjct: 1 MSIVPKETIEVIGQSVGIANLPADVSAALAPDVEYRLREIMQEAIKCMRHAKRTVLTADD 60
Query: 2501 VDSALNLRNVEPIYGFASGDPLRFKRAVGHKDLFYIDDKEVEFKDVIEAPIPKAPLDTAV 2680
VDSAL+LRNVEP+YGFASGDPLRFKRAVGHKDLFYIDD+EV+FK++IEAP+PKAPLDTAV
Sbjct: 61 VDSALSLRNVEPVYGFASGDPLRFKRAVGHKDLFYIDDREVDFKEIIEAPLPKAPLDTAV 120
Query: 2681 VAHWLAIEGVQPAIPENAPVEALVAPSDTRKSEH-KEDGLPVEIKLPIKHVLSRELQLYF 2857
VAHWLAIEGVQPAIPEN PV+A+VAP++ +++EH K+DGLPV+IKLP+KHVLSRELQ+YF
Sbjct: 121 VAHWLAIEGVQPAIPENPPVDAIVAPTENKRTEHGKDDGLPVDIKLPVKHVLSRELQMYF 180
Query: 2858 DKITELTVTRSDSVLFKEALSSLATDSGLHPLVPYFTYFISDEITRSLNDFPLLFALMRL 3037
DKI ELT++RS++ +F+EAL SL+ DSGLHPLVPYF+YFI+DE+TRSL D P+LFALMR+
Sbjct: 181 DKIAELTMSRSETSVFREALVSLSRDSGLHPLVPYFSYFIADEVTRSLGDLPVLFALMRV 240
Query: 3038 VRSLLQNP 3061
V+SLL NP
Sbjct: 241 VQSLLHNP 248
Score = 286 bits (732), Expect = 3e-74
Identities = 145/267 (54%), Positives = 181/267 (67%), Gaps = 5/267 (1%)
Frame = +1
Query: 3178 ICKRFGHVYHNLQPRVTRTLLHAFLDPTKAMTQHYGAIQGLATLGPSVIRLLILPNLEPY 3357
+C+RFGH YHN+Q RVTRTL+ FLDP K++TQHYGAIQG++ LGPS IRLL+LPNLE Y
Sbjct: 294 VCRRFGHAYHNIQTRVTRTLVQGFLDPQKSLTQHYGAIQGISALGPSAIRLLLLPNLETY 353
Query: 3358 LQLLEPEMLLEKQKNEMKRHEAWRVYGALLCAAGQCMYDRLKLFPGLLSPPARTVWRTNG 3537
+QLLEPE+ L+KQKNEMKR EAWRVYGALLCAAG+C+YDRLKLFP LLSP R + R+N
Sbjct: 354 MQLLEPELQLDKQKNEMKRKEAWRVYGALLCAAGKCLYDRLKLFPNLLSPSTRPLLRSNK 413
Query: 3538 RVVTTMPNKRKMSLDHSAQQPPLKKVATEGLVGA-----VPAAADGFPSTSVDSIMASSS 3702
RVVT PNKRK S D S QPPLKK+ T+G + + +P DGF + + M +S
Sbjct: 414 RVVTNNPNKRKSSTDLSTSQPPLKKMTTDGAMNSMTSAPMPGTMDGFSTQLPNPSMTQTS 473
Query: 3703 SFRQAKNESSSGGXXXXXXXXXXXXXXXXXSSSRREKGEGRPPKMSIALAQAWKEDMDAG 3882
S Q ++SG RR++G ++S L AWKED +AG
Sbjct: 474 SSGQLVESTASG-------------------VIRRDQGSNHTQRVSTVLRLAWKEDQNAG 514
Query: 3883 HLMASLFEFFGESILPFTPTAELSFFL 3963
HL++SL+E FGE+I F E+SFFL
Sbjct: 515 HLLSSLYEVFGEAIFSFVQPPEISFFL 541