BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00001114
         (1392 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268721.2| PREDICTED: replication protein A 32 kDa subu...   363   7e-98
emb|CBI17841.3| unnamed protein product [Vitis vinifera]              363   7e-98
emb|CAJ13715.1| putative replication factor A [Capsicum chinense]     313   9e-83
ref|XP_004146319.1| PREDICTED: replication protein A 32 kDa subu...   302   2e-79
ref|XP_002282796.1| PREDICTED: replication factor A protein 2 [V...   295   2e-77

>ref|XP_002268721.2| PREDICTED: replication protein A 32 kDa subunit [Vitis vinifera]
          Length = 275

 Score =  363 bits (931), Expect = 7e-98
 Identities = 180/276 (65%), Positives = 219/276 (79%), Gaps = 1/276 (0%)
 Frame = +3

Query: 306  YSQFDGNAAFSGGGFMPSQATQTTDSGFPSSKNRDSQGLLPLTVKQISEAYDSSDDKSNF 485
            +SQFDGNAAFSGGGFMPSQATQ  + GF  ++NRD+Q LLPLTVKQISEA+ SSDDKSNF
Sbjct: 4    HSQFDGNAAFSGGGFMPSQATQAAEPGFSPARNRDTQALLPLTVKQISEAFLSSDDKSNF 63

Query: 486  VIDGVEANNITLVGMVFNKTERVTEVIFTIDDGTGRIECHRWFQENVESKEMEEIQDGMY 665
            +IDGVE NN+TLVGMVFNK ERVT+V F +DDGTGRI+C+RW  E V++KEME I DGMY
Sbjct: 64   LIDGVEVNNVTLVGMVFNKAERVTDVGFMLDDGTGRIDCNRWVNEAVDTKEMEGILDGMY 123

Query: 666  VRIHGHLKGFQGKKQLVIFSVRPVTNFNEIAYHFIECVYVHLSNINLQKMKGGAQTQNYM 845
            VR+HGHLKGFQGK+ L +FS+RPVT+FNEIA HFIEC+YVH+ N    K + G  TQ+++
Sbjct: 124  VRVHGHLKGFQGKRHLNVFSIRPVTDFNEIASHFIECIYVHIYN---TKSRAGGPTQSHV 180

Query: 846  TNSAVGMNGSVGQQTSFSNQVSAQFD-GIKGLDQKVLDYLNQPSCINRESGVSRDEIADR 1022
            TN A+G     G Q S  NQ S Q+  G+KG+DQ V+DYL QP  + R+ GV RDE+A +
Sbjct: 181  TNPAIG-TPLKGYQASQPNQFSGQYGAGLKGVDQLVIDYLQQPQSLARDQGVGRDELAQQ 239

Query: 1023 LKVPVGRIMDSIRTLEAEGAVYSTIDECHFKSILNG 1130
            L VPV +IM+SIR+LE EG +YSTIDE H+KS  NG
Sbjct: 240  LNVPVDKIMESIRSLEEEGLIYSTIDEWHYKSTGNG 275


>emb|CBI17841.3| unnamed protein product [Vitis vinifera]
          Length = 277

 Score =  363 bits (931), Expect = 7e-98
 Identities = 179/276 (64%), Positives = 220/276 (79%), Gaps = 1/276 (0%)
 Frame = +3

Query: 306  YSQFDGNAAFSGGGFMPSQATQTTDSGFPSSKNRDSQGLLPLTVKQISEAYDSSDDKSNF 485
            +SQFDGNAAFSGGGFMPSQATQ  + GF  ++NRD+Q LLPLTVKQISEA+ SSDDKSNF
Sbjct: 4    HSQFDGNAAFSGGGFMPSQATQAAEPGFSPARNRDTQALLPLTVKQISEAFLSSDDKSNF 63

Query: 486  VIDGVEANNITLVGMVFNKTERVTEVIFTIDDGTGRIECHRWFQENVESKEMEEIQDGMY 665
            +IDGVE NN+TLVGMVFNK ERVT+V F +DDGTGRI+C+RW  E V++KEME I DGMY
Sbjct: 64   LIDGVEVNNVTLVGMVFNKAERVTDVGFMLDDGTGRIDCNRWVNEAVDTKEMEGILDGMY 123

Query: 666  VRIHGHLKGFQGKKQLVIFSVRPVTNFNEIAYHFIECVYVHLSNINLQKMKGGAQTQNYM 845
            VR+HGHLKGFQGK+ L +FS+RPVT+FNEIA HFIEC+YVH+ N    +++ G  TQ+++
Sbjct: 124  VRVHGHLKGFQGKRHLNVFSIRPVTDFNEIASHFIECIYVHIYNTK-SRVQAGGPTQSHV 182

Query: 846  TNSAVGMNGSVGQQTSFSNQVSAQFD-GIKGLDQKVLDYLNQPSCINRESGVSRDEIADR 1022
            TN A+G     G Q S  NQ S Q+  G+KG+DQ V+DYL QP  + R+ GV RDE+A +
Sbjct: 183  TNPAIG-TPLKGYQASQPNQFSGQYGAGLKGVDQLVIDYLQQPQSLARDQGVGRDELAQQ 241

Query: 1023 LKVPVGRIMDSIRTLEAEGAVYSTIDECHFKSILNG 1130
            L VPV +IM+SIR+LE EG +YSTIDE H+KS  NG
Sbjct: 242  LNVPVDKIMESIRSLEEEGLIYSTIDEWHYKSTGNG 277


>emb|CAJ13715.1| putative replication factor A [Capsicum chinense]
          Length = 299

 Score =  313 bits (801), Expect = 9e-83
 Identities = 158/275 (57%), Positives = 203/275 (73%), Gaps = 2/275 (0%)
 Frame = +3

Query: 309  SQFDGNAAFSGGGFMPSQATQT-TDSGFPSSKNRDSQGLLPLTVKQISEAYDSSDDKSNF 485
            +QFDGNAAFSGGGFMPSQATQT +D  F  +KNRDSQ L+PLTVKQISEA+ SSDDK+NF
Sbjct: 25   NQFDGNAAFSGGGFMPSQATQTASDHSFSPTKNRDSQTLIPLTVKQISEAFQSSDDKTNF 84

Query: 486  VIDGVEANNITLVGMVFNKTERVTEVIFTIDDGTGRIECHRWFQENVESKEMEEIQDGMY 665
            +IDGV+ NN+ LVG++FNK E +T V F +DDGTGR++C RW  E V++KEME + +G+Y
Sbjct: 85   LIDGVDVNNVKLVGILFNKAEMLTAVSFVVDDGTGRLDCFRWVNEAVDTKEMEALTNGIY 144

Query: 666  VRIHGHLKGFQGKKQLVIFSVRPVTNFNEIAYHFIECVYVHLSNINLQKMKGGAQTQNYM 845
            VR+HGHLKGFQGKKQL+ +SVRPV ++NEIA HF E +YVH  N  L+K +  +     +
Sbjct: 145  VRVHGHLKGFQGKKQLMAYSVRPVDDYNEIASHFAEVIYVHSYNSRLRKQQDSSFMSAQV 204

Query: 846  TNSAVGMNGSVGQQTSFSNQVSA-QFDGIKGLDQKVLDYLNQPSCINRESGVSRDEIADR 1022
             +S+       G Q S SNQ      DGI G+ + VLDYL QPSC+  E GV R+E+A +
Sbjct: 205  PSSSFN-TPLKGYQASASNQFPGFNMDGIGGVHKMVLDYLQQPSCLALEKGVHRNELAQQ 263

Query: 1023 LKVPVGRIMDSIRTLEAEGAVYSTIDECHFKSILN 1127
            L+VP  +IM ++  LE+EG VYSTID+ H+KS  N
Sbjct: 264  LRVPSEKIMGAMEALESEGLVYSTIDDFHYKSTGN 298


>ref|XP_004146319.1| PREDICTED: replication protein A 32 kDa subunit B-like [Cucumis
            sativus] gi|449500253|ref|XP_004161048.1| PREDICTED:
            replication protein A 32 kDa subunit B-like [Cucumis
            sativus]
          Length = 277

 Score =  302 bits (773), Expect = 2e-79
 Identities = 155/277 (55%), Positives = 195/277 (70%), Gaps = 3/277 (1%)
 Frame = +3

Query: 309  SQFDGNAAFSGGGFMPSQATQTTDSGFPSSKNRDSQGLLPLTVKQISEAYDSSDDKSNFV 488
            SQFDGNAAFSGGGFMPSQ TQ  D  F  +KNRD Q LLPLTVKQI++A+ SSDDKSNFV
Sbjct: 4    SQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFV 63

Query: 489  IDGVEANNITLVGMVFNKTERVTEVIFTIDDGTGRIECHRWFQENVESKEMEEIQDGMYV 668
            IDGV+ NN+ LVGMV N+  R+T+V F +DDGTGRI+C +W  E  +S E+E I DGMYV
Sbjct: 64   IDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDGMYV 123

Query: 669  RIHGHLKGFQGKKQLVIFSVRPVTNFNEIAYHFIECVYVHLSNINLQKMKGGAQ-TQNYM 845
            R+HGHLK FQGK+ L +FS+RPVT++NEI  HFIE +YVH  N  L+K +  +  TQ  M
Sbjct: 124  RVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQPQM 183

Query: 846  TNSAVGMNGSVGQQTSFSNQVSAQF--DGIKGLDQKVLDYLNQPSCINRESGVSRDEIAD 1019
            TN  +        Q   +NQ + Q   D  K L+Q VLD+L  PSC + E G  RD IA 
Sbjct: 184  TN--LSNTPMKVYQAPIANQYTGQAGGDSWKSLEQMVLDFLQLPSC-DSERGAHRDVIAQ 240

Query: 1020 RLKVPVGRIMDSIRTLEAEGAVYSTIDECHFKSILNG 1130
            +LKVP+ +++ +++ LE EG +YST D+ HFKS  NG
Sbjct: 241  QLKVPLEKLIPAMKNLEEEGLIYSTTDDFHFKSTANG 277


>ref|XP_002282796.1| PREDICTED: replication factor A protein 2 [Vitis vinifera]
            gi|296081770|emb|CBI20775.3| unnamed protein product
            [Vitis vinifera]
          Length = 268

 Score =  295 bits (755), Expect = 2e-77
 Identities = 159/275 (57%), Positives = 203/275 (73%), Gaps = 1/275 (0%)
 Frame = +3

Query: 309  SQFDGNAAFSGGGFMPSQATQTTDSGFPSSKNRDSQGLLPLTVKQISEAYDSSDDKSNFV 488
            SQFD    FSGG      ++Q+TDSG  S+K+R++QGL+P+TVKQISEA  S DDKSNF 
Sbjct: 6    SQFD---PFSGG----FSSSQSTDSGVSSAKSRETQGLIPVTVKQISEASHSGDDKSNFQ 58

Query: 489  IDGVEANNITLVGMVFNKTERVTEVIFTIDDGTGRIECHRWFQENVESKEMEEIQDGMYV 668
            IDGV+  NITLVGMVF+K+ERVT+V F +DDGTGRIEC RW  E  +++EME I DG+YV
Sbjct: 59   IDGVDVTNITLVGMVFDKSERVTDVSFALDDGTGRIECKRWVNEAFDTREMENISDGIYV 118

Query: 669  RIHGHLKGFQGKKQLVIFSVRPVTNFNEIAYHFIECVYVHLSNINLQKMKGGAQTQNYMT 848
            R++GHL+   G +QLV FSVRPVTNF+EIA+HFIE +++HL N +  ++   A TQ    
Sbjct: 119  RLNGHLRSSGGNRQLVAFSVRPVTNFDEIAFHFIEVIHLHLKN-SKTRLPSDALTQPL-- 175

Query: 849  NSAVGMNGSVGQQTSFSNQVSAQ-FDGIKGLDQKVLDYLNQPSCINRESGVSRDEIADRL 1025
             SA     S G QT  S+Q+SAQ  DG+KGLDQ VLDYL QPS  +RE G+ RDE++ +L
Sbjct: 176  -SASVKTESTGYQTP-SSQLSAQSVDGVKGLDQMVLDYLQQPSNYDREKGIHRDELSQQL 233

Query: 1026 KVPVGRIMDSIRTLEAEGAVYSTIDECHFKSILNG 1130
            K+   +IM+SIRTLE EG +YSTIDE H+KS  +G
Sbjct: 234  KISTEKIMESIRTLEEEGLIYSTIDEFHYKSTTSG 268