BLASTX nr result
ID: Cimicifuga21_contig00000984
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00000984
(2179 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003588337.1| Ribosomal protein S10 [Medicago truncatula] ... 246 2e-62
ref|XP_003588326.1| ATP synthase subunit alpha [Medicago truncat... 210 6e-59
ref|YP_588403.1| hypothetical protein ZeamMp158 [Zea mays subsp.... 155 2e-38
ref|ZP_06097399.1| conserved hypothetical protein [Brucella sp. ... 127 2e-28
ref|ZP_05934035.1| conserved hypothetical protein [Brucella ceti... 127 2e-28
>ref|XP_003588337.1| Ribosomal protein S10 [Medicago truncatula]
gi|355477385|gb|AES58588.1| Ribosomal protein S10
[Medicago truncatula]
Length = 1152
Score = 246 bits (628), Expect = 2e-62
Identities = 114/118 (96%), Positives = 116/118 (98%)
Frame = +1
Query: 1726 PAKTAPKQTKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERI 1905
P +TAPKQTKRC+PHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERI
Sbjct: 391 PKQTAPKQTKRCMPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERI 450
Query: 1906 RKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSIGPMITH 2079
RKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSI PMITH
Sbjct: 451 RKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSIRPMITH 508
Score = 211 bits (538), Expect = 5e-52
Identities = 117/163 (71%), Positives = 118/163 (72%)
Frame = +1
Query: 115 GELGRRKRGS*LKVACLAQEVGTV*NKVANGCVTRGNLPNSSGQILKKAKKRCXXXXXXX 294
G K +KVACLAQEVGTV NKVANGCV RGNLPNSSGQILKKAKK
Sbjct: 106 GSWAEGKEAPSVKVACLAQEVGTVENKVANGCVMRGNLPNSSGQILKKAKK--------- 156
Query: 295 XXXXXXXXTKPMMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*VKFEGQ 474
TKPMMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNI
Sbjct: 157 -------LTKPMMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNI-------- 201
Query: 475 CRL*SSFVECAIMTGLEEEAPANSVPAAAVRRGGQVFFGMTGR 603
CAIMTGLEEEAPANSVPAAAVRRGGQVFFGMTGR
Sbjct: 202 ---------CAIMTGLEEEAPANSVPAAAVRRGGQVFFGMTGR 235
Score = 204 bits (520), Expect(2) = 4e-50
Identities = 109/146 (74%), Positives = 110/146 (75%)
Frame = +2
Query: 743 GTPKAKAALWVPTDAGVRKHGERTGLDTLVVHAVNDECSPLVYADQGPS*RVKHSAWGVR 922
GTPKAKAALWVPTDAGVRKH ERTGLDTLVVHAVNDECSPLVY DQGP
Sbjct: 240 GTPKAKAALWVPTDAGVRKHRERTGLDTLVVHAVNDECSPLVYVDQGP------------ 287
Query: 923 SQDRNSKELTGACTSGGACGLIRYNAQNLTSP*HMNNKTCP*RDGTYFHTGAAWLSSARV 1102
+RNSKELTGACTSGGACGLIRYNAQNLTS AAWLSSARV
Sbjct: 288 --NRNSKELTGACTSGGACGLIRYNAQNLTS--------------------AAWLSSARV 325
Query: 1103 VRCLVKSYNERNPRFVLLRHAPKEKV 1180
VRCLVKSYNERNPRFVLLRHAPKEKV
Sbjct: 326 VRCLVKSYNERNPRFVLLRHAPKEKV 351
Score = 22.3 bits (46), Expect(2) = 4e-50
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 1173 RKSVFATEVSRG 1208
++ VFATEVSRG
Sbjct: 348 KEKVFATEVSRG 359
Score = 95.5 bits (236), Expect = 5e-17
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = +2
Query: 2 FTRFYHYKAQSYSKEEFDPGSERTLAICLTHASRTLF*GSWAEGKEAPS 148
FTRFYH +AQSYSKEEFDPGSE TLAICLTHASRTLF GSWAEGKEAPS
Sbjct: 68 FTRFYHCRAQSYSKEEFDPGSEGTLAICLTHASRTLFSGSWAEGKEAPS 116
>ref|XP_003588326.1| ATP synthase subunit alpha [Medicago truncatula]
gi|355477374|gb|AES58577.1| ATP synthase subunit alpha
[Medicago truncatula]
Length = 1116
Score = 164 bits (414), Expect(3) = 6e-59
Identities = 81/97 (83%), Positives = 82/97 (84%)
Frame = -2
Query: 1041 QVLLFICQGLVRFCALYRIKPHAPPLVQAPVNSFEFRSCDRTPQAECFTR*LGP*SA*TK 862
QV LFICQGLVRFCALYRIKPHAPPLVQAPVNSFEFRSCDRTP+ TK
Sbjct: 845 QVFLFICQGLVRFCALYRIKPHAPPLVQAPVNSFEFRSCDRTPE--------------TK 890
Query: 861 GEHSSFTAWTTRVSNPVRSPCFRTPASVGTQRAAFAF 751
GEHSSFTAWTTRVSNPVRSPCFRTPASVGTQRAAFAF
Sbjct: 891 GEHSSFTAWTTRVSNPVRSPCFRTPASVGTQRAAFAF 927
Score = 58.9 bits (141), Expect(3) = 6e-59
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -1
Query: 1180 DFLLRRMSQQHKTRVSLVIGLDQTSHDT 1097
DFLLRRMSQQHKTRVSLVIGLDQTSHDT
Sbjct: 816 DFLLRRMSQQHKTRVSLVIGLDQTSHDT 843
Score = 54.7 bits (130), Expect(3) = 6e-59
Identities = 29/43 (67%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Frame = -3
Query: 1304 TLESAS--KGAGSLLTDSTATCWHXXXXXXXXXXXXAHFGCKD 1182
TLESAS KGAGSLLTDSTATCWH AHFGCKD
Sbjct: 774 TLESASNSKGAGSLLTDSTATCWHSISSAGASLGSSAHFGCKD 816
Score = 210 bits (534), Expect = 1e-51
Identities = 101/103 (98%), Positives = 102/103 (99%)
Frame = -3
Query: 461 FTHAILLDRAFAHCPRFPTAAPRGSPGRVSVPVWLIIRKDQLSIIGLVSLYLTNYLILRR 282
FTHAILLDRAFAHCPRFPTAAPRGSPGRVSVPVWLIIRKDQLSIIGLVSLYLTNYLILRR
Sbjct: 968 FTHAILLDRAFAHCPRFPTAAPRGSPGRVSVPVWLIIRKDQLSIIGLVSLYLTNYLILRR 1027
Query: 281 LIKQRFLAFFRIWPELFGRFPRVTHPFATLF*TVPTSWARQAT 153
LIKQRFLAFFRIWPELFGRFPR+THPFATLF TVPTSWARQAT
Sbjct: 1028 LIKQRFLAFFRIWPELFGRFPRITHPFATLFSTVPTSWARQAT 1070
Score = 137 bits (344), Expect = 2e-29
Identities = 85/183 (46%), Positives = 94/183 (51%)
Frame = -2
Query: 564 YRGCWHGVSRGFFLESCHDRALDERALQAALPFKLHSRDIAGSGFRPLSKIPHCCPPWES 385
YRGCWHGVSRGFFLESCHDRALDERALQAALPF H+ + F + P P
Sbjct: 935 YRGCWHGVSRGFFLESCHDRALDERALQAALPFFTHAI-LLDRAFAHCPRFPTAAPRGSP 993
Query: 384 GPCLSPSVADHPKRPAKHHWLGQPLPDQLPNTTQAHQTALFSFLQDLARTVRQIPTRYAP 205
G P K L + + +F + + P P
Sbjct: 994 GRVSVPVWLIIRKDQLSIIGLVSLYLTNYLILRRLIKQRFLAFFRIWPELFGRFPRITHP 1053
Query: 204 VRHFVLNCSHLLGETSYL*LGASFPSAQLP*NNVRLACVKHIASVRSEPGSNSSFEYDWA 25
+ LGASFPSAQLP NNVRLACVKHIASV SEPGSNSSFEYDWA
Sbjct: 1054 FATLFSTVPTSWARQATFTLGASFPSAQLPENNVRLACVKHIASVPSEPGSNSSFEYDWA 1113
Query: 24 L*W 16
L W
Sbjct: 1114 LQW 1116
Score = 77.8 bits (190), Expect(3) = 9e-18
Identities = 36/41 (87%), Positives = 37/41 (90%)
Frame = -1
Query: 1753 LFVSEPFWRGVLLPLRTTPPGGSPECRVFLRRQLDVVVTCK 1631
LF S FWRGVL PLRTTPPGGSPECRVFLRRQLDVV+TCK
Sbjct: 705 LFRSRLFWRGVLNPLRTTPPGGSPECRVFLRRQLDVVLTCK 745
Score = 31.2 bits (69), Expect(3) = 9e-18
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 1955 FMFPSCREQSELRQSFRIRSALQP 1884
F F + +RQSFRIRSALQP
Sbjct: 674 FAFSKSKVSKSMRQSFRIRSALQP 697
Score = 29.3 bits (64), Expect(3) = 9e-18
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -2
Query: 1770 VRHAPFCLFRSR 1735
+RHAPFCLFRSR
Sbjct: 698 LRHAPFCLFRSR 709
>ref|YP_588403.1| hypothetical protein ZeamMp158 [Zea mays subsp. mays]
gi|40795104|gb|AAR91148.1| hypothetical protein
(mitochondrion) [Zea mays]
Length = 111
Score = 155 bits (393), Expect(2) = 2e-38
Identities = 70/75 (93%), Positives = 72/75 (96%)
Frame = +1
Query: 1732 KTAPKQTKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRK 1911
+ APKQ KRCVPHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCYNGN NGKQGCKAERIRK
Sbjct: 37 RPAPKQRKRCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRK 96
Query: 1912 DCLSSDCSLQLGNMK 1956
DCLSSDCSLQLGNMK
Sbjct: 97 DCLSSDCSLQLGNMK 111
Score = 32.3 bits (72), Expect(2) = 2e-38
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 1683 GEPPGGVVRSGNST 1724
G+PPGGVVRSGNST
Sbjct: 23 GQPPGGVVRSGNST 36
>ref|ZP_06097399.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|264663256|gb|EEZ33517.1| conserved hypothetical
protein [Brucella sp. 83/13]
Length = 122
Score = 127 bits (318), Expect(2) = 2e-28
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = +1
Query: 1798 EEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIA 1977
EEGGDDVKS+WPL AG HTCYNG +G++ + E I K LSSDC+LQL MKLESLVIA
Sbjct: 13 EEGGDDVKSSWPLRAGLHTCYNGGDSGQRARECELISKSHLSSDCTLQLECMKLESLVIA 72
Query: 1978 DQHAAVNMYPGPVHTARHTLGIGFAR 2055
DQHAAVN +PG VHTARHT+G+GF R
Sbjct: 73 DQHAAVNTFPGLVHTARHTMGVGFTR 98
Score = 27.7 bits (60), Expect(2) = 2e-28
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3
Query: 2136 HGGVFDWGEVVTR 2174
HG V DWGEVVTR
Sbjct: 110 HGRVSDWGEVVTR 122
>ref|ZP_05934035.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261316118|ref|ZP_05955315.1| conserved hypothetical
protein [Brucella pinnipedialis M163/99/10]
gi|261322643|ref|ZP_05961840.1| conserved hypothetical
protein [Brucella ceti M644/93/1]
gi|261757300|ref|ZP_06001009.1| conserved hypothetical
protein [Brucella sp. F5/99] gi|260924843|gb|EEX91411.1|
conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261295333|gb|EEX98829.1| conserved hypothetical
protein [Brucella ceti M644/93/1]
gi|261305144|gb|EEY08641.1| conserved hypothetical
protein [Brucella pinnipedialis M163/99/10]
gi|261737284|gb|EEY25280.1| conserved hypothetical
protein [Brucella sp. F5/99]
Length = 116
Score = 127 bits (318), Expect(2) = 2e-28
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = +1
Query: 1798 EEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIA 1977
EEGGDDVKS+WPL AG HTCYNG +G++ + E I K LSSDC+LQL MKLESLVIA
Sbjct: 7 EEGGDDVKSSWPLRAGLHTCYNGGDSGQRARECELISKSHLSSDCTLQLECMKLESLVIA 66
Query: 1978 DQHAAVNMYPGPVHTARHTLGIGFAR 2055
DQHAAVN +PG VHTARHT+G+GF R
Sbjct: 67 DQHAAVNTFPGLVHTARHTMGVGFTR 92
Score = 27.7 bits (60), Expect(2) = 2e-28
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3
Query: 2136 HGGVFDWGEVVTR 2174
HG V DWGEVVTR
Sbjct: 104 HGRVSDWGEVVTR 116