BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00000858
         (1036 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263201.1| PREDICTED: chlorophyll a-b binding protein C...   439   e-121
ref|XP_002298178.1| light-harvesting complex II protein Lhcb6 [P...   436   e-120
gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 pr...   436   e-120
ref|XP_002303160.1| light-harvesting complex II protein Lhcb6 [P...   436   e-120
gb|AFK41475.1| unknown [Lotus japonicus]                              434   e-119

>ref|XP_002263201.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
           [Vitis vinifera] gi|147804704|emb|CAN71620.1|
           hypothetical protein VITISV_015544 [Vitis vinifera]
          Length = 257

 Score =  439 bits (1130), Expect = e-121
 Identities = 213/257 (82%), Positives = 232/257 (90%), Gaps = 3/257 (1%)
 Frame = -1

Query: 955 MAATSAAGLKAYGSPFLCGNKGTKSLLSSSIGGSRVGAV-APRGLVIVAQ--KKSWLPGV 785
           MAATSAA L   GSPFL G K ++SLLS+ +      AV APR L++VA   KKSWLPGV
Sbjct: 1   MAATSAAVLNGLGSPFLTGGKRSQSLLSAGVAAKAGAAVPAPRRLIVVAAAPKKSWLPGV 60

Query: 784 KAGGSLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQA 605
           KAGG+LVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQA
Sbjct: 61  KAGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 120

Query: 604 YSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPESQSVEWATPWSKT 425
           +SGIPWFEAGA PGA+APFSFG+LLGTQL+LMGWVESKRWVDFFNPESQSVEWATPWS+T
Sbjct: 121 WSGIPWFEAGAAPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 180

Query: 424 ADNFANSTGEQGYPGGKFFDPLSFAGTIENGAYIPDEEKLERLKLAEIKHARLAMVAMLI 245
           A+NFAN+TGEQGYPGGKFFDPLS AGTI++G YIPD EKLERLKLAEIKHAR+AM+AMLI
Sbjct: 181 AENFANATGEQGYPGGKFFDPLSLAGTIKDGVYIPDVEKLERLKLAEIKHARIAMLAMLI 240

Query: 244 FYFEAGQGKTPLGVFGL 194
           FYFEAGQGKTPLG  GL
Sbjct: 241 FYFEAGQGKTPLGALGL 257


>ref|XP_002298178.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
           gi|118486723|gb|ABK95197.1| unknown [Populus
           trichocarpa] gi|222845436|gb|EEE82983.1|
           light-harvesting complex II protein Lhcb6 [Populus
           trichocarpa]
          Length = 257

 Score =  436 bits (1121), Expect = e-120
 Identities = 214/259 (82%), Positives = 229/259 (88%), Gaps = 5/259 (1%)
 Frame = -1

Query: 955 MAATSAAGLKAYGSPFLCGNKGTKSLLSSSIGGSRVGA--VAPRGLVIVAQ---KKSWLP 791
           MAAT+ A L   GS FLCG K  ++LL   IG SR G+  V  R LV+VA    KKSW+P
Sbjct: 1   MAATAGAVLNGLGSSFLCGGKRNQALLG--IGASRTGSFPVGTRKLVVVAAAQPKKSWIP 58

Query: 790 GVKAGGSLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVG 611
            VK GGSLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVG
Sbjct: 59  AVKGGGSLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVG 118

Query: 610 QAYSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPESQSVEWATPWS 431
           QA+SGIPWFEAGADPGAIAPFSFGSLLGTQL+LMGWVESKRWVDFFNPESQSVEWATPWS
Sbjct: 119 QAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 178

Query: 430 KTADNFANSTGEQGYPGGKFFDPLSFAGTIENGAYIPDEEKLERLKLAEIKHARLAMVAM 251
           KTA+NFAN+TG+QGYPGGKFFDPL FAGT+++G YIPD EKLERLK+AEIKHARLAMVAM
Sbjct: 179 KTAENFANATGDQGYPGGKFFDPLGFAGTLKDGVYIPDVEKLERLKVAEIKHARLAMVAM 238

Query: 250 LIFYFEAGQGKTPLGVFGL 194
           LIFYFEAGQGKTPLG  GL
Sbjct: 239 LIFYFEAGQGKTPLGALGL 257


>gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
          Length = 258

 Score =  436 bits (1120), Expect = e-120
 Identities = 208/256 (81%), Positives = 230/256 (89%), Gaps = 3/256 (1%)
 Frame = -1

Query: 952 AATSAAGLKAYGSPFLCGNKGTKSLLSSSIGGSRVGAVAPRGLVIVAQ---KKSWLPGVK 782
           AATS A L   GS FL G   +++LL++SIGG    AV+PR L++VA    KKSW+PGV+
Sbjct: 3   AATSGAVLNGLGSSFLSGGSRSQTLLATSIGGKVGVAVSPRRLIVVAAAAPKKSWIPGVR 62

Query: 781 AGGSLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAY 602
            GG+LVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQA+
Sbjct: 63  GGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW 122

Query: 601 SGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPESQSVEWATPWSKTA 422
           SG+PWFEAGADP AIAPFSFGSLLGTQLILMGWVESKRWVDFFNP+SQSVEWATPWSKTA
Sbjct: 123 SGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTA 182

Query: 421 DNFANSTGEQGYPGGKFFDPLSFAGTIENGAYIPDEEKLERLKLAEIKHARLAMVAMLIF 242
           +NFAN+TGEQGYPGGKFFDPL FAGT+++G YIPD EKLERLKLAEIKHAR+AM+AMLIF
Sbjct: 183 ENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 242

Query: 241 YFEAGQGKTPLGVFGL 194
           YFEAGQGKTPLG  GL
Sbjct: 243 YFEAGQGKTPLGALGL 258


>ref|XP_002303160.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
           gi|118487218|gb|ABK95437.1| unknown [Populus
           trichocarpa] gi|118489807|gb|ABK96703.1| unknown
           [Populus trichocarpa x Populus deltoides]
           gi|222840592|gb|EEE78139.1| light-harvesting complex II
           protein Lhcb6 [Populus trichocarpa]
          Length = 257

 Score =  436 bits (1120), Expect = e-120
 Identities = 213/259 (82%), Positives = 228/259 (88%), Gaps = 5/259 (1%)
 Frame = -1

Query: 955 MAATSAAGLKAYGSPFLCGNKGTKSLLSSSIGGSRVGA--VAPRGLVIVAQ---KKSWLP 791
           MAA S A L   GS FLCG K +++L  S IG + +G+  V  R L IVA    KKSW+P
Sbjct: 1   MAAASGAVLNGLGSSFLCGGKRSRAL--SGIGATGIGSCSVGARKLTIVAAAQPKKSWIP 58

Query: 790 GVKAGGSLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVG 611
            VK GGS VDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVG
Sbjct: 59  AVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVG 118

Query: 610 QAYSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPESQSVEWATPWS 431
           QA+SGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPESQSVEWATPWS
Sbjct: 119 QAWSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPESQSVEWATPWS 178

Query: 430 KTADNFANSTGEQGYPGGKFFDPLSFAGTIENGAYIPDEEKLERLKLAEIKHARLAMVAM 251
           KTA+NFAN+TG+QGYPGGKFFDPL FAGT++NG YIPDEEKLERLKLAEIKHARLAM+AM
Sbjct: 179 KTAENFANATGDQGYPGGKFFDPLGFAGTLKNGVYIPDEEKLERLKLAEIKHARLAMIAM 238

Query: 250 LIFYFEAGQGKTPLGVFGL 194
           LIFYFEAGQGKTPLG  GL
Sbjct: 239 LIFYFEAGQGKTPLGALGL 257


>gb|AFK41475.1| unknown [Lotus japonicus]
          Length = 260

 Score =  434 bits (1115), Expect = e-119
 Identities = 206/260 (79%), Positives = 229/260 (88%), Gaps = 4/260 (1%)
 Frame = -1

Query: 961 MAMAATSAAGLKAYGSPFLCGNKGTKSLLSSSIGGSRVGAVAPRGLVIVAQ----KKSWL 794
           MA AATS A L   GS FLCG   +++LL+S+ G     AV+P+ L++ A     KKSW+
Sbjct: 1   MAAAATSGAVLNGLGSSFLCGGNRSQTLLASAAGAKAGAAVSPKRLIVAAAAAAPKKSWI 60

Query: 793 PGVKAGGSLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 614
           P VK GG+LVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV
Sbjct: 61  PAVKGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 120

Query: 613 GQAYSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPESQSVEWATPW 434
           GQA+SG+PWFEAGADP AIAPFSFGSLLGTQLILMGWVESKRWVDFFNP+SQSVEWATPW
Sbjct: 121 GQAWSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPW 180

Query: 433 SKTADNFANSTGEQGYPGGKFFDPLSFAGTIENGAYIPDEEKLERLKLAEIKHARLAMVA 254
           SKTA+NFAN TG+QGYPGGKFFDPL+ AGT+++G YIPD+EKLERLKLAEIKHARLAM+A
Sbjct: 181 SKTAENFANYTGDQGYPGGKFFDPLALAGTLQDGVYIPDKEKLERLKLAEIKHARLAMLA 240

Query: 253 MLIFYFEAGQGKTPLGVFGL 194
           MLIFYFEAGQGKTPLG  GL
Sbjct: 241 MLIFYFEAGQGKTPLGALGL 260