BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00000739
         (1446 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   366   7e-99
emb|CBI34828.3| unnamed protein product [Vitis vinifera]              362   1e-97
emb|CAD18921.1| RNA-binding protein precursor [Persea americana]      353   5e-95
ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ri...   343   5e-92
emb|CBI14910.3| unnamed protein product [Vitis vinifera]              343   6e-92

>ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
            vinifera]
          Length = 312

 Score =  366 bits (940), Expect = 7e-99
 Identities = 195/318 (61%), Positives = 226/318 (71%), Gaps = 11/318 (3%)
 Frame = -2

Query: 1286 SATTSLFKPLAMADGCVTSLPT-LFTPKTSYPFCSLPSKPIXXXXXXXXXXXXXXXXXXX 1110
            +++ +L KP +MA+ C+TS+PT LFT KT +P  SLP KP+                   
Sbjct: 2    ASSNALLKPFSMAESCLTSVPTTLFTTKTPHPLLSLPPKPVRLFHLSCSCSSSWVSLKTK 61

Query: 1109 KTSSSNLITLVASTSGWAQQEEDSKV----------EETQADVSEWXXXXXXXXXXXXXX 960
             TS + L+  VA TS WAQQEE+ +           EE +A  SE               
Sbjct: 62   -TSPTTLVPFVAQTSDWAQQEEEEEKGGLTWDSEGGEEIEASGSE-------EAWEGEVG 113

Query: 959  XXXXXXXXXXXDYVDPPEEAKLFVGNLPYDVTSESLAELFDKAGEVQVSEVIYNRETDQS 780
                        Y +PPEEAKLFVGNLPYD+ SE LA+LFD+AG V+++EVIYNRETDQS
Sbjct: 114  EDGEESEGSEDTYSEPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQS 173

Query: 779  RGFGFVWFKTVEEAEKAVEMFNRYDLNGRYLTVNKAAPKGSRPERTPRTFEPSFRIYVGN 600
            RGFGF+   TVEEAEKAVEMFNRYDLNGR+LTVNKAAP+GSRPER P+ FEPSFRIYVGN
Sbjct: 174  RGFGFITMSTVEEAEKAVEMFNRYDLNGRFLTVNKAAPRGSRPERPPQAFEPSFRIYVGN 233

Query: 599  LPWQVDDARLEQVFSEHGKVVQARVVYDRDTGRSRGFGFVTMSTQSELNDAIEALDGQNL 420
            LPWQVDDARLEQVFSEHGKVV ARVVYDRDT RSRGFGFVTMS+++ELNDAI ALDGQ+L
Sbjct: 234  LPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSL 293

Query: 419  DGRAVRVNAAEERPRRSS 366
            DGRA+RVN AEERPRR S
Sbjct: 294  DGRAIRVNVAEERPRRGS 311


>emb|CBI34828.3| unnamed protein product [Vitis vinifera]
          Length = 272

 Score =  362 bits (929), Expect = 1e-97
 Identities = 189/297 (63%), Positives = 218/297 (73%), Gaps = 1/297 (0%)
 Frame = -2

Query: 1253 MADGCVTSLPT-LFTPKTSYPFCSLPSKPIXXXXXXXXXXXXXXXXXXXKTSSSNLITLV 1077
            MA+ C+TS+PT LFT KT +P  SLP KP+                    TS + L+  V
Sbjct: 1    MAESCLTSVPTTLFTTKTPHPLLSLPPKPVRLFHLSCSCSSSWVSLKTK-TSPTTLVPFV 59

Query: 1076 ASTSGWAQQEEDSKVEETQADVSEWXXXXXXXXXXXXXXXXXXXXXXXXXDYVDPPEEAK 897
            A TS WAQQEE+ + +  +++ SE                           Y +PPEEAK
Sbjct: 60   AQTSDWAQQEEEEEKDGEESEGSE-------------------------DTYSEPPEEAK 94

Query: 896  LFVGNLPYDVTSESLAELFDKAGEVQVSEVIYNRETDQSRGFGFVWFKTVEEAEKAVEMF 717
            LFVGNLPYD+ SE LA+LFD+AG V+++EVIYNRETDQSRGFGF+   TVEEAEKAVEMF
Sbjct: 95   LFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVEMF 154

Query: 716  NRYDLNGRYLTVNKAAPKGSRPERTPRTFEPSFRIYVGNLPWQVDDARLEQVFSEHGKVV 537
            NRYDLNGR+LTVNKAAP+GSRPER P+ FEPSFRIYVGNLPWQVDDARLEQVFSEHGKVV
Sbjct: 155  NRYDLNGRFLTVNKAAPRGSRPERPPQAFEPSFRIYVGNLPWQVDDARLEQVFSEHGKVV 214

Query: 536  QARVVYDRDTGRSRGFGFVTMSTQSELNDAIEALDGQNLDGRAVRVNAAEERPRRSS 366
             ARVVYDRDT RSRGFGFVTMS+++ELNDAI ALDGQ+LDGRA+RVN AEERPRR S
Sbjct: 215  DARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEERPRRGS 271


>emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
          Length = 300

 Score =  353 bits (907), Expect = 5e-95
 Identities = 188/300 (62%), Positives = 214/300 (71%), Gaps = 9/300 (3%)
 Frame = -2

Query: 1238 VTSLPTLFTPKTSYPFCSLPSKPIXXXXXXXXXXXXXXXXXXXKTSSSNLITLVASTSGW 1059
            V S P LF+ K   PF  +PSKPI                     SS +L TLVA TS W
Sbjct: 2    VPSSPILFSSKPPCPFLPIPSKPIKLIHLSTSSSSWVSFKKSPSPSSRSLTTLVAQTSDW 61

Query: 1058 AQQEEDSKVEETQADVSEWXXXXXXXXXXXXXXXXXXXXXXXXXDYVD---------PPE 906
            AQQEEDS V E  A +S+W                          +V+         PPE
Sbjct: 62   AQQEEDSNVAE--ATLSDWEGEGEGEGEEQTESGAEDGEESGGDGFVEGGEEDSYPLPPE 119

Query: 905  EAKLFVGNLPYDVTSESLAELFDKAGEVQVSEVIYNRETDQSRGFGFVWFKTVEEAEKAV 726
            EAKLFVGNLPYDV  ++LAELFD+AG V+V+EVIYNRETDQSRGFGFV   TVEEAEKAV
Sbjct: 120  EAKLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAV 179

Query: 725  EMFNRYDLNGRYLTVNKAAPKGSRPERTPRTFEPSFRIYVGNLPWQVDDARLEQVFSEHG 546
            EMFNRYD+NGR LTVNKAAP+G+R +R PR FEP+FR+YVGNLPWQVDDARLEQVFSEHG
Sbjct: 180  EMFNRYDINGRLLTVNKAAPRGARVDRPPRAFEPAFRMYVGNLPWQVDDARLEQVFSEHG 239

Query: 545  KVVQARVVYDRDTGRSRGFGFVTMSTQSELNDAIEALDGQNLDGRAVRVNAAEERPRRSS 366
            KVV+ARVVYDR+TGRSRGFGFVTMSTQ+EL+DAI ALDGQ+LDGRA+RVN AE+RPRR+S
Sbjct: 240  KVVEARVVYDRETGRSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRVNVAEDRPRRAS 299


>ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
            gi|223550401|gb|EEF51888.1| ribonucleoprotein,
            chloroplast, putative [Ricinus communis]
          Length = 319

 Score =  343 bits (881), Expect = 5e-92
 Identities = 184/320 (57%), Positives = 220/320 (68%), Gaps = 20/320 (6%)
 Frame = -2

Query: 1268 FKPLAMADGCVTSLPTLFTPKTSYPFCSLPSKPIXXXXXXXXXXXXXXXXXXXKTSSSNL 1089
            FKPL+MAD C+ SLP++FT K  Y   S+PS+P                    KT  S+L
Sbjct: 4    FKPLSMADSCLLSLPSIFTSKPPYLSLSVPSRP-----PIKLHITQSYSSLKSKTHFSSL 58

Query: 1088 ITLVASTSGWAQQEEDSKV------------------EETQADVSEWXXXXXXXXXXXXX 963
            + LVA TS WAQQEE+                      ET+A VS+W             
Sbjct: 59   VPLVAQTSDWAQQEENDATVTLAESEQEQEWEGQESETETEARVSDWDSEGESAAVDGQG 118

Query: 962  XXXXXXXXXXXXD--YVDPPEEAKLFVGNLPYDVTSESLAELFDKAGEVQVSEVIYNRET 789
                        +  + +PPE+AK+FVGNLPYDV S+ LA LF++AG V+++EVIYNRET
Sbjct: 119  EEEEEVFEGSEPEEAFEEPPEDAKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRET 178

Query: 788  DQSRGFGFVWFKTVEEAEKAVEMFNRYDLNGRYLTVNKAAPKGSRPERTPRTFEPSFRIY 609
            D SRGFGFV   TVEEAEKAVEMF+R+DL+GR LTVNKAAP+GSRPER PR FEP +RIY
Sbjct: 179  DTSRGFGFVSMSTVEEAEKAVEMFHRHDLDGRLLTVNKAAPRGSRPERPPRVFEPGYRIY 238

Query: 608  VGNLPWQVDDARLEQVFSEHGKVVQARVVYDRDTGRSRGFGFVTMSTQSELNDAIEALDG 429
            VGNLPW VD+ARLEQ+FSEHGKVV ARVVYDRDTGRSRGFGFVTMST++ELNDAI ALDG
Sbjct: 239  VGNLPWDVDNARLEQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAALDG 298

Query: 428  QNLDGRAVRVNAAEERPRRS 369
            ++LDGRA+RVN AE+RPRR+
Sbjct: 299  RSLDGRAIRVNVAEQRPRRN 318


>emb|CBI14910.3| unnamed protein product [Vitis vinifera]
          Length = 306

 Score =  343 bits (880), Expect = 6e-92
 Identities = 184/313 (58%), Positives = 220/313 (70%), Gaps = 4/313 (1%)
 Frame = -2

Query: 1292 MSSATTSLFKPLAMADGCVTSLPTLFTPKTSYPFCSLPS-KPIXXXXXXXXXXXXXXXXX 1116
            MSSAT  L KP ++ +G   SLPT+F+ KT + +  +P  KPI                 
Sbjct: 1    MSSATHHLLKPFSIPNGSPISLPTIFSTKTPHSYLPIPPHKPIKLLLSCSQSSLFSPSLF 60

Query: 1115 XXK-TSSSNLITLVASTSGWAQQEEDSKV--EETQADVSEWXXXXXXXXXXXXXXXXXXX 945
                T SS+++T VA TS WAQQEED+ V  EE Q +   W                   
Sbjct: 61   LKSKTLSSSVVTFVAQTSDWAQQEEDNTVIIEEEQEEKVTWENEEAISDDGVVDDGEDS- 119

Query: 944  XXXXXXDYVDPPEEAKLFVGNLPYDVTSESLAELFDKAGEVQVSEVIYNRETDQSRGFGF 765
                   Y +PPEEAK+FVGNLPYDV SE LA LF++AG V+++EVIYNRETD+SRGFGF
Sbjct: 120  -------YSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGF 172

Query: 764  VWFKTVEEAEKAVEMFNRYDLNGRYLTVNKAAPKGSRPERTPRTFEPSFRIYVGNLPWQV 585
            V   TVEEAEKAV+MF+RY+L+GR LTVNKAAP+GS+PER PR FEP+FR+YVGNLPW V
Sbjct: 173  VSMSTVEEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPERPPRVFEPAFRMYVGNLPWDV 232

Query: 584  DDARLEQVFSEHGKVVQARVVYDRDTGRSRGFGFVTMSTQSELNDAIEALDGQNLDGRAV 405
            D ARLEQVFSEHGKVV+ARVV+DR+TGRSRGFGFVTMS+Q+EL DAI A DGQ LDGR +
Sbjct: 233  DSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTI 292

Query: 404  RVNAAEERPRRSS 366
            RVN AEERPRRS+
Sbjct: 293  RVNVAEERPRRSA 305