BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00000727
         (1408 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEL29573.1| geranyl-diphosphate synthase [Medicago sativa]         238   4e-60
ref|XP_003617556.1| Geranylgeranyl pyrophosphate synthase [Medic...   227   7e-57
dbj|BAF98300.1| geranyl-diphosphate synthase [Hevea brasiliensis]     226   9e-57
gb|AAS82859.1| geranyl diphosphate synthase small subunit [Antir...   226   1e-56
gb|AFK47692.1| unknown [Medicago truncatula]                          224   6e-56

>gb|AEL29573.1| geranyl-diphosphate synthase [Medicago sativa]
          Length = 301

 Score =  238 bits (606), Expect = 4e-60
 Identities = 133/290 (45%), Positives = 187/290 (64%), Gaps = 4/290 (1%)
 Frame = +1

Query: 241  FSSISNAKIHHPSPSFRPIMVSMSQNQTS-WATINSEVEAHIQHALSGKQPASVFDPMNH 417
            FS ISN    H +   +P  V MS  QT  WA+++++VEAH++  ++ K+P  VF+PM+H
Sbjct: 17   FSCISNQHRSHLTTKLKPTTVRMSMTQTPYWASLHADVEAHLKQTITIKEPLLVFEPMHH 76

Query: 418  LIFEAPRSMAPALCIAACEVVGGKREEAIPAACALHLMHAATYTHEYLQLSDQSVPK--S 591
            LIF AP++  PALC+AACE+VGG+R+EAI AA AL LM AATYTHE+L LSD+  PK   
Sbjct: 77   LIFTAPKTTVPALCLAACELVGGQRQEAISAASALLLMEAATYTHEHLPLSDRPGPKPGP 136

Query: 592  VSNHAFGPNIELLTADSMVPFGYELLASMDDTSGISSERLLRVMTEIGHTMGS-EGMVNG 768
            + +H +GPN+ELLT D +VPFG+ELLA  D   G +SER+L+VM EI   +GS  G+++ 
Sbjct: 137  MIDHVYGPNVELLTGDGIVPFGFELLARSD--GGENSERILKVMVEISRAVGSGGGVIDA 194

Query: 769  QYMKVQSTKLDGDEPCKKEMIDQVFEKKGGALYSXXXXXXXXXXXXSDEEIEKLRRYGLY 948
            QYMK      DGDE C  E I +V EK  G L+S             +EEIE+LR++G Y
Sbjct: 195  QYMKTLGGGSDGDEICHVEEIRRVVEKYEGRLHSCGAVCGGVLGGGCEEEIERLRKFGFY 254

Query: 949  VGMIHGIMVHSSYGTEKRLMKMADELGYLALRELEGMKYKNVEPIRSLMD 1098
            VG+I G++        K ++    E   LA++EL+  K K V+ I++ ++
Sbjct: 255  VGIIQGMIKWGFKEDHKEVV----EARNLAIQELKFFKDKEVDAIKTFLN 300


>ref|XP_003617556.1| Geranylgeranyl pyrophosphate synthase [Medicago truncatula]
            gi|355518891|gb|AET00515.1| Geranylgeranyl pyrophosphate
            synthase [Medicago truncatula]
          Length = 297

 Score =  227 bits (578), Expect = 7e-57
 Identities = 125/288 (43%), Positives = 184/288 (63%), Gaps = 2/288 (0%)
 Frame = +1

Query: 241  FSSISNAKIHHPSPSFRPIMVSMSQNQTS-WATINSEVEAHIQHALSGKQPASVFDPMNH 417
            FS ISN    H +   +   + MS  QT  WA++++++EAH++  ++ K+P  VF+PM+H
Sbjct: 17   FSCISNQHRSHLNTKLKSTTLRMSMTQTPYWASLHADIEAHLKQTITIKEPLVVFEPMHH 76

Query: 418  LIFEAPRSMAPALCIAACEVVGGKREEAIPAACALHLMHAATYTHEYLQLSDQSVPKSVS 597
            LIF AP++  PALC+A CE+VGG+R +AI AA AL LM AATYTHE+L L+D+  P+ + 
Sbjct: 77   LIFTAPKTTVPALCLATCELVGGQRHQAISAASALLLMEAATYTHEHLPLTDR--PRPMI 134

Query: 598  NHAFGPNIELLTADSMVPFGYELLASMDDTSGISSERLLRVMTEIGHTMGS-EGMVNGQY 774
            NH +GPN+ELLT D +VPFG+ELLA  D   G +SER+L+VM EI   +GS  G+++ QY
Sbjct: 135  NHVYGPNMELLTGDGIVPFGFELLARSD--GGENSERILKVMVEISRAVGSGGGVIDAQY 192

Query: 775  MKVQSTKLDGDEPCKKEMIDQVFEKKGGALYSXXXXXXXXXXXXSDEEIEKLRRYGLYVG 954
             K+  +  DG+E C  E I  V EK  G L+S             +EEIE+LR++G YVG
Sbjct: 193  GKILYSGSDGEEKCHVEEIRHVVEKYEGRLHSCGAVCGGVLGGGCEEEIERLRKFGYYVG 252

Query: 955  MIHGIMVHSSYGTEKRLMKMADELGYLALRELEGMKYKNVEPIRSLMD 1098
            +I G++        K ++    E   LA++EL+  K K V+ I++ ++
Sbjct: 253  IIQGMIKWGFKEDHKEVV----EARNLAIQELKFFKDKEVDAIKTFLN 296


>dbj|BAF98300.1| geranyl-diphosphate synthase [Hevea brasiliensis]
          Length = 306

 Score =  226 bits (577), Expect = 9e-57
 Identities = 121/286 (42%), Positives = 184/286 (64%), Gaps = 2/286 (0%)
 Frame = +1

Query: 247  SISNAKIHHPSPSFRPIMVSMSQNQTSWATINSEVEAHIQHALSGKQPASVFDPMNHLIF 426
            ++S++   HP  S RP++V+MS +Q+ W+++N++++ H++ A+  +QP +VF+PM HLI 
Sbjct: 17   AVSSSNPKHPLFSHRPMVVAMSTDQSYWSSVNADLDTHLKQAIPIRQPLAVFEPMRHLIL 76

Query: 427  EAPRSMAPALCIAACEVVGGKREEAIPAACALHLMHAATYTHEYLQLSDQSVPKSVSNHA 606
             AP++ APALCIAACE+VGG R +A+ AA AL L+HA+  THE L L+D+  P   +   
Sbjct: 77   SAPQTSAPALCIAACELVGGHRNQAMAAASALRLVHASASTHENLPLTDRPRPMPRTRPT 136

Query: 607  -FGPNIELLTADSMVPFGYELLASMDDTSGISSERLLRVMTEIGHTMGSEGMVNGQYMKV 783
             +GPNIELL AD ++P+G+ELLA  DD +  +S R+LR + EI   MGS+G++ GQY + 
Sbjct: 137  LYGPNIELLIADGIIPYGFELLARDDDAAENNSNRVLRAIIEISRAMGSQGVIEGQYNES 196

Query: 784  QSTKLDGDEPCKKEMIDQVFEKKGGALYSXXXXXXXXXXXXSDEEIEKLRRYGLYVGMIH 963
            Q  + +G+E      +  V  KK G L++            S++EIEKLRRYGLYVGM+ 
Sbjct: 197  QYEESEGEEIFHVGWLQNVCRKKEGTLHACAGACGAILGGGSEDEIEKLRRYGLYVGMVQ 256

Query: 964  GIMVHSSYGTEKRL-MKMADELGYLALRELEGMKYKNVEPIRSLMD 1098
            GI+  S     K   +K  ++L  LAL+EL+      V+ I  L++
Sbjct: 257  GIL--SKVDERKEWPVKEVNKLRDLALKELKDFNQAKVKTISILVE 300


>gb|AAS82859.1| geranyl diphosphate synthase small subunit [Antirrhinum majus]
          Length = 297

 Score =  226 bits (575), Expect = 1e-56
 Identities = 125/294 (42%), Positives = 186/294 (63%), Gaps = 1/294 (0%)
 Frame = +1

Query: 220  HCSTAS-TFSSISNAKIHHPSPSFRPIMVSMSQNQTSWATINSEVEAHIQHALSGKQPAS 396
            H +T S  F SI+ +K   PS   RP++++M++ QT  ATI S++E++++ A+  + P S
Sbjct: 7    HFNTKSGLFPSITKSKTTRPST--RPVILAMTRTQTYRATIESDIESYLKKAIPIRAPES 64

Query: 397  VFDPMNHLIFEAPRSMAPALCIAACEVVGGKREEAIPAACALHLMHAATYTHEYLQLSDQ 576
            VF+PM+HL F APR+ A ALC+AACE+VGG R +A+ AA A+HLMH A YTHE L L+D 
Sbjct: 65   VFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAAAAAVHLMHVAAYTHENLPLTDG 124

Query: 577  SVPKSVSNHAFGPNIELLTADSMVPFGYELLASMDDTSGISSERLLRVMTEIGHTMGSEG 756
             + KS   H F PNIELLT D ++PFG EL+A   D +  + +R+LR + E+   MGSEG
Sbjct: 125  PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEG 184

Query: 757  MVNGQYMKVQSTKLDGDEPCKKEMIDQVFEKKGGALYSXXXXXXXXXXXXSDEEIEKLRR 936
            +V GQY ++   +L+       E+I+ V +KK G L++             +++IEKLRR
Sbjct: 185  IVEGQYHELGLNQLN-----DLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRR 239

Query: 937  YGLYVGMIHGIMVHSSYGTEKRLMKMADELGYLALRELEGMKYKNVEPIRSLMD 1098
            +GLYVG + G++  +  G E R+     EL  LA++ELE    + +E IR + +
Sbjct: 240  FGLYVGTVQGLLGKNRSGFEGRI----KELKELAVKELESFGGEKIELIRGVFE 289


>gb|AFK47692.1| unknown [Medicago truncatula]
          Length = 297

 Score =  224 bits (570), Expect = 6e-56
 Identities = 124/288 (43%), Positives = 182/288 (63%), Gaps = 2/288 (0%)
 Frame = +1

Query: 241  FSSISNAKIHHPSPSFRPIMVSMSQNQTS-WATINSEVEAHIQHALSGKQPASVFDPMNH 417
            FS ISN    H +   +   +  S  QT  WA++++++EAH++  ++ K+P  VF+PM+H
Sbjct: 17   FSCISNQHRSHLNTKLKSTTLRTSMTQTPYWASLHADIEAHLKQTITIKEPLVVFEPMHH 76

Query: 418  LIFEAPRSMAPALCIAACEVVGGKREEAIPAACALHLMHAATYTHEYLQLSDQSVPKSVS 597
            LIF AP++  PALC+A CE VGG+R +AI AA AL LM AATYTHE+L L+D+  P+ + 
Sbjct: 77   LIFTAPKTTVPALCLATCEFVGGQRHQAISAASALLLMEAATYTHEHLPLTDR--PRPMI 134

Query: 598  NHAFGPNIELLTADSMVPFGYELLASMDDTSGISSERLLRVMTEIGHTMGS-EGMVNGQY 774
            NH +GPN+ELLT D +VPFG+ELLA  D   G +SER+L+VM EI   +GS  G+++ QY
Sbjct: 135  NHVYGPNMELLTGDGIVPFGFELLARSD--GGENSERILKVMVEISRAVGSGGGVIDAQY 192

Query: 775  MKVQSTKLDGDEPCKKEMIDQVFEKKGGALYSXXXXXXXXXXXXSDEEIEKLRRYGLYVG 954
             K+  +  DG+E C  E I  V EK  G L+S             +EEIE+LR++G YVG
Sbjct: 193  GKILYSGSDGEEKCHVEEIRHVVEKYEGRLHSCGAVCGGVLGGGCEEEIERLRKFGYYVG 252

Query: 955  MIHGIMVHSSYGTEKRLMKMADELGYLALRELEGMKYKNVEPIRSLMD 1098
            +I G++        K ++    E   LA++EL+  K K V+ I++ ++
Sbjct: 253  IIQGMIKWGFKEDHKEVV----EARNLAIQELKFFKDKEVDAIKTFLN 296