BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00000680
         (1438 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16200.3| unnamed protein product [Vitis vinifera]              329   1e-87
emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]   322   2e-85
ref|XP_002281461.2| PREDICTED: DNA repair protein RAD51 homolog ...   312   1e-82
ref|XP_002531104.1| DNA repair and recombination protein radB, p...   306   1e-80
ref|XP_004148219.1| PREDICTED: DNA repair protein RAD51 homolog ...   295   2e-77

>emb|CBI16200.3| unnamed protein product [Vitis vinifera]
          Length = 1093

 Score =  329 bits (843), Expect = 1e-87
 Identities = 170/317 (53%), Positives = 217/317 (68%)
 Frame = -2

Query: 1347 LQPYKIDKMPSLKSLEVEYSMIDSSFQQFCASHGIFTVEDFLVNDICVLVAFAERQSASK 1168
            L   ++ +M SLKSLE EY +IDS FQ FCASHGIF+VED L++D+ +LVAFAE+QS S+
Sbjct: 45   LSAVELREMGSLKSLECEYPIIDSDFQNFCASHGIFSVEDILIHDLYMLVAFAEQQSTSE 104

Query: 1167 ELKQGITQVLSIIDTMHQPWMNGVDLLRGVHQNKRVLSTXXXXXXXXXXXXXXXXXXXXX 988
             LKQGITQ+LSIID  HQPW+NG++LL    QNK+VLST                     
Sbjct: 105  RLKQGITQILSIIDGQHQPWLNGMELLEDAQQNKQVLSTGCEGIDMLLHGGLCVGHLTEL 164

Query: 987  XGPSSSGKTQVCLQAATTIAYKYMASVMFLDTCNSFSSRRIALFIDQLLSPSLKQAKHKI 808
             GPSS+GKTQ+CL+ A+ +A +YM  V+F+DT NSFS  RIA FI+Q+     K+ K  I
Sbjct: 165  VGPSSAGKTQICLKVASGVATRYMGGVVFIDTGNSFSPLRIAHFINQIPDTIFKEVKQNI 224

Query: 807  LERTMSNIFCHSVFDIFGLLDALHNLELKLRTQVKTEEGKXXXXXXXXXXXXXXXXLGGG 628
            LE+ MS I CHSVFDIF +LD +H LE  LR+QV+T   +                LGG 
Sbjct: 225  LEKVMSQILCHSVFDIFAMLDVVHQLEYSLRSQVQTGADQVRLLIVDSISSLITPILGGS 284

Query: 627  GAQGHSLMVSAGFFLKKLVHEYDLSVLVTNHMVGGGEGSSKPALGESWKNVSHVQLLLSR 448
            G+ G +LM+SAGF LKKL HE++L+V+VTNHMVGG  G  KPALGESWK++ HV+LLLSR
Sbjct: 285  GSHGRALMISAGFLLKKLAHEHNLAVVVTNHMVGGEGGILKPALGESWKSIPHVRLLLSR 344

Query: 447  DHRSNLCSISILRHPCM 397
            D  S++C +SIL+H  M
Sbjct: 345  DPGSSICHMSILKHSYM 361


>emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
          Length = 1051

 Score =  322 bits (824), Expect = 2e-85
 Identities = 172/335 (51%), Positives = 218/335 (65%), Gaps = 19/335 (5%)
 Frame = -2

Query: 1323 MPSLKSLEVEYSMIDSSFQQFCASHGIFTVEDFLVNDICVLVAFAERQSASKELKQGITQ 1144
            M SLKSLE EY +IDS FQ FCASHGIF+VED L++D+ +LVAFAE+QS S+ LKQGITQ
Sbjct: 1    MGSLKSLECEYPIIDSDFQNFCASHGIFSVEDILIHDLYMLVAFAEQQSTSERLKQGITQ 60

Query: 1143 VLSIIDTMHQPWMNGVDLLRGVHQNKRVLSTXXXXXXXXXXXXXXXXXXXXXXGPSSSGK 964
            +LSIID  HQPW+NG++LL    QNK+VLST                      GPSSSGK
Sbjct: 61   ILSIIDGQHQPWLNGMELLEDAQQNKQVLSTGCEGIDMLLQGGLCVGHLTELVGPSSSGK 120

Query: 963  TQVCLQAATTIAYKYMASVMFLDTCNSFSSRRIALFIDQLLSPSLKQAKHKILERTMSNI 784
            TQ+CL+ A+ +A +YM  V+F+DT NSFS  RIA FI+Q+     K+ K  ILE+ MS I
Sbjct: 121  TQICLKVASGVATRYMGGVVFIDTGNSFSPLRIAHFINQIPDTIFKEVKQNILEKVMSQI 180

Query: 783  FCHSVFDIFGLLDALHNLELKLRTQVKTEEGKXXXXXXXXXXXXXXXXLGGGGAQGHSLM 604
             CHSVFDIF +LD +H LE  LR+QV+T   +                LGG G+ G +LM
Sbjct: 181  LCHSVFDIFAMLDVVHQLEYSLRSQVQTGADQVRLLIVDSISSLITPILGGSGSHGRALM 240

Query: 603  VSAGFFLKKLVHEYDLSVL-------------------VTNHMVGGGEGSSKPALGESWK 481
            +SAGF LKKL HE++L+V+                   VTNHMVGG  G  KPALGESWK
Sbjct: 241  ISAGFLLKKLAHEHNLAVVPIIKVSILTIITIMIHWLKVTNHMVGGEGGILKPALGESWK 300

Query: 480  NVSHVQLLLSRDHRSNLCSISILRHPCMASGQAVN 376
            ++ HV+LLLSRD  S++C +SIL+H  M+  +A+N
Sbjct: 301  SIPHVRLLLSRDPGSSICHMSILKHSYMSRTKAIN 335


>ref|XP_002281461.2| PREDICTED: DNA repair protein RAD51 homolog 4-like [Vitis vinifera]
          Length = 326

 Score =  312 bits (800), Expect = 1e-82
 Identities = 166/309 (53%), Positives = 208/309 (67%)
 Frame = -2

Query: 1323 MPSLKSLEVEYSMIDSSFQQFCASHGIFTVEDFLVNDICVLVAFAERQSASKELKQGITQ 1144
            M SLKSLE EY +IDS FQ FCASHGIF+VED L++D+ +LVAFAE+QS S+ LKQGITQ
Sbjct: 1    MGSLKSLECEYPIIDSDFQNFCASHGIFSVEDILIHDLYMLVAFAEQQSTSERLKQGITQ 60

Query: 1143 VLSIIDTMHQPWMNGVDLLRGVHQNKRVLSTXXXXXXXXXXXXXXXXXXXXXXGPSSSGK 964
            +LSIID  HQPW+NG++LL    QNK+VLST                      GPSS+GK
Sbjct: 61   ILSIIDGQHQPWLNGMELLEDAQQNKQVLSTGCEGIDMLLHGGLCVGHLTELVGPSSAGK 120

Query: 963  TQVCLQAATTIAYKYMASVMFLDTCNSFSSRRIALFIDQLLSPSLKQAKHKILERTMSNI 784
            TQ+CL+ A+ +A +YM  V+F+DT NSFS  RIA FI+Q+     K       E  MS I
Sbjct: 121  TQICLKVASGVATRYMGGVVFIDTGNSFSPLRIAHFINQIPDTIFK-------EVIMSQI 173

Query: 783  FCHSVFDIFGLLDALHNLELKLRTQVKTEEGKXXXXXXXXXXXXXXXXLGGGGAQGHSLM 604
             CHSVFDIF +LD +H LE  LR+QV+T   +                LGG G+ G +LM
Sbjct: 174  LCHSVFDIFAMLDVVHQLEYSLRSQVQTGADQVRLLIVDSISSLITPILGGSGSHGRALM 233

Query: 603  VSAGFFLKKLVHEYDLSVLVTNHMVGGGEGSSKPALGESWKNVSHVQLLLSRDHRSNLCS 424
            +SAGF LKKL HE++L+V+VTNHMVGG  G  KPALGESWK++ HV+LLLSRD  S++C 
Sbjct: 234  ISAGFLLKKLAHEHNLAVVVTNHMVGGEGGILKPALGESWKSIPHVRLLLSRDPGSSICH 293

Query: 423  ISILRHPCM 397
            +SIL+H  M
Sbjct: 294  MSILKHSYM 302


>ref|XP_002531104.1| DNA repair and recombination protein radB, putative [Ricinus
            communis] gi|223529300|gb|EEF31269.1| DNA repair and
            recombination protein radB, putative [Ricinus communis]
          Length = 315

 Score =  306 bits (783), Expect = 1e-80
 Identities = 162/322 (50%), Positives = 205/322 (63%), Gaps = 1/322 (0%)
 Frame = -2

Query: 1323 MPSLKSLEVEYSMIDSSFQQFCASHGIFTVEDFLVNDICVLVAFAERQSASKELKQGITQ 1144
            M  LKSLE  YS++DS+FQ FCASH IFTVEDFL+ D+  L   AE++  S+ LK+GI Q
Sbjct: 1    MAPLKSLEKSYSILDSNFQSFCASHAIFTVEDFLIQDLDALATLAEQEPTSQRLKEGINQ 60

Query: 1143 VLSIIDTM-HQPWMNGVDLLRGVHQNKRVLSTXXXXXXXXXXXXXXXXXXXXXXGPSSSG 967
            +LSIID   HQPW+NG  LL+   QNK VLST                      G SSSG
Sbjct: 61   ILSIIDKQQHQPWLNGFQLLKDALQNKHVLSTGFDGIDSLLGGGVREGQLTELVGSSSSG 120

Query: 966  KTQVCLQAATTIAYKYMASVMFLDTCNSFSSRRIALFIDQLLSPSLKQAKHKILERTMSN 787
            KTQVCLQ A  +A ++M  V+F+DT NSFS RRI  F+ ++   +L Q         MSN
Sbjct: 121  KTQVCLQVAANVAKQHMGRVIFVDTGNSFSPRRIEQFVGRISGSALNQT-------VMSN 173

Query: 786  IFCHSVFDIFGLLDALHNLELKLRTQVKTEEGKXXXXXXXXXXXXXXXXLGGGGAQGHSL 607
            I CHSVFDIF + D LH LE+ LR+Q  + + K                LGGGG+QGH+L
Sbjct: 174  ILCHSVFDIFSMFDVLHQLEISLRSQGHSGDFKVQSLIVDSISSLITPILGGGGSQGHAL 233

Query: 606  MVSAGFFLKKLVHEYDLSVLVTNHMVGGGEGSSKPALGESWKNVSHVQLLLSRDHRSNLC 427
            M SAG  LKKL HE++++VLVTNHMV G  G+ KPALGESWK++ HV+LLLSRD   N+C
Sbjct: 234  MTSAGILLKKLAHEHNIAVLVTNHMVAGEGGNFKPALGESWKSIPHVRLLLSRDQGKNVC 293

Query: 426  SISILRHPCMASGQAVNIAILD 361
            +++IL+HP  ASG+A    + D
Sbjct: 294  NVTILKHPSQASGKAARFTVDD 315


>ref|XP_004148219.1| PREDICTED: DNA repair protein RAD51 homolog 4-like [Cucumis sativus]
            gi|449518921|ref|XP_004166484.1| PREDICTED: DNA repair
            protein RAD51 homolog 4-like [Cucumis sativus]
          Length = 314

 Score =  295 bits (756), Expect = 2e-77
 Identities = 161/322 (50%), Positives = 205/322 (63%), Gaps = 1/322 (0%)
 Frame = -2

Query: 1323 MPSLKSLEVEYSMIDSSFQQFCASHGIFTVEDFLVNDICVLVAFAERQSASKELKQGITQ 1144
            M  LKSLE     IDS+F  FCASHGIFTVEDFL+ D+ VL AFAE+Q AS++LKQGITQ
Sbjct: 1    MAPLKSLEELCPFIDSNFLTFCASHGIFTVEDFLIRDLYVLAAFAEQQPASEKLKQGITQ 60

Query: 1143 VLSIID-TMHQPWMNGVDLLRGVHQNKRVLSTXXXXXXXXXXXXXXXXXXXXXXGPSSSG 967
            +LSIID T  QPW+NG++LL    +NK +LS                       GPSSSG
Sbjct: 61   ILSIIDATERQPWVNGLELLEDARENKNILSIGFEGVDVLLGGGLREGQLTEIVGPSSSG 120

Query: 966  KTQVCLQAATTIAYKYMASVMFLDTCNSFSSRRIALFIDQLLSPSLKQAKHKILERTMSN 787
            KTQVCL+AA+ +A  Y A V ++DT NSFS +RI+ F+          ++  +L+R M++
Sbjct: 121  KTQVCLRAASNVAKNYKAEVFYMDTGNSFSPQRISGFVCT--------SEQSMLQRVMTS 172

Query: 786  IFCHSVFDIFGLLDALHNLELKLRTQVKTEEGKXXXXXXXXXXXXXXXXLGGGGAQGHSL 607
            I CHSVF+IF L D LH LE  LR+Q    + +                LGG  +QGH+L
Sbjct: 173  ISCHSVFNIFALFDVLHQLEFNLRSQTCKGDRRVQLLIIDSISSLITPILGGSSSQGHAL 232

Query: 606  MVSAGFFLKKLVHEYDLSVLVTNHMVGGGEGSSKPALGESWKNVSHVQLLLSRDHRSNLC 427
            M+SAG  LKK+ HE++++VLVTNH VGG  G+SKPALGESWK+V HV+L LSRD  SN+C
Sbjct: 233  MISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVC 292

Query: 426  SISILRHPCMASGQAVNIAILD 361
              SIL+H  MASG      I +
Sbjct: 293  QASILKHSSMASGMTARFVIYE 314